Identification of the progenitors of Indonesian and Vietnamese avian influenza A (H5N1) viruses from southern China

Journal of Virology

Volumn 82, Issue 7, 2008, Pages 3405-3414

  Wang, J ^a,b   Vijaykrishna, D ^a,b   Duan, L ^a,b   Bahl, J ^a,b   Zhang, J X ^a,b   Webster, R G ^c   Peiris, J S M ^b   Chen, H ^a,b   Smith, Gavin J D ^a,b   Guan, Y ^a,b  

^a SHANTOU UNIVERSITY   (China)

^b THE UNIVERSITY OF HONG KONG   (Hong Kong)

^c ST JUDE CHILDREN S RESEARCH HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HEMAGGLUTININ; SIALIDASE;

ARTICLE; AVIAN INFLUENZA; CHINA; GENE; GENE ISOLATION; GENE SEQUENCE; GENETIC VARIABILITY; GENOTYPE; HEMAGGLUTININ GENE; INDONESIA; INFLUENZA VIRUS A H5N1; MALAYSIA; NEURAMINIDASE GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POULTRY; PRIORITY JOURNAL; THAILAND; TIME SERIES ANALYSIS; VIET NAM; VIRUS ISOLATION; VIRUS TRANSMISSION;

ANIMALS; CHINA; EPIDEMIOLOGY, MOLECULAR; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; INFLUENZA A VIRUS, H5N1 SUBTYPE; INFLUENZA IN BIRDS; MOLECULAR SEQUENCE DATA; NEURAMINIDASE; PHYLOGENY; POULTRY; POULTRY DISEASES; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; VIRAL PROTEINS;

AVES; INFLUENZA A VIRUS;

EID: 41149176903     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.02468-07     Document Type: Article

References (40)

1. Alexander, D. J. 2007. An overview of the epidemiology of avian influenza. Vaccine 25:5637-5644.
2. Bragstad, K., P. H. Jørgensen, K. Handberg, A. S. Hammer, S. Kabell, and A. Fomsgaard. 2007. First introduction of highly pathogenic H5N1 avian influenza A viruses in wild and domestic birds in Denmark, Northern Europe. Virol. J. 4:43.
3. Bray, R. J., and J. T. Curtis. 1957. An ordination of the upland forest communities of southern Wisconsin. Ecol. Monogr. 27:325-349.
4. Chen, H., G. J. D. Smith, S. Y. Zhang, K. Qin, J. Wang, K. S. Li, R. G. Webster, J. S. M. Peiris, and Y. Guan. 2005. H5N1 virus outbreak in migratory waterfowl. Nature 436:191-192.
5. Chen, H., G. J. D. Smith, K. S. Li, J. Wang, X. H. Fan, J. M. Rayner, D. Vijaykrishna, J. X. Zhang, L. J. Zhang, C. T. Guo, C. L. Cheung, K. M. Xu, L. Duan, K. Huang, K. Qin, Y. H. Leung, W. L. Wu, H. R. Lu, Y. Chen, N. S. Xia, T. S. Naipospos, K. Y. Yuen, S. S. Hassan, S. Bahri, T. D. Nguyen, R. G. Webster, J. S. Peiris, and Y. Guan. 2006. Establishment of multiple sublineages of H5N1 influenza virus in Asia: implications for pandemic control. Proc. Natl. Acad. Sci. USA 103:2845-2850.
6. Cheung, C. L., J. M. Rayner, G. J. D. Smith, P. Wang, T. S. P. Naipospos, J. Zhang, K. Y. Yuen, R. G. Webster, J. S. M. Peiris, Y. Guan, and H. Chen. 2006. Distribution of amantadine-resistant H5N1 avian influenza variants in Asia. J. Infect. Dis. 193:1626-1629.
7. Cheung, C. L., D. Vijaykrishna, G. J. D. Smith, X. H. Fan, J. X. Zhang, J. Bahl, L. Duan, K. Huang, H. Tai, J. Wang, L. L. M. Poon, J. S. M. Peiris, H. Chen, and Y. Guan. 2007. Establishment of influenza A virus (H6N1) in minor poultry in southern China. J. Virol. 81:10402-10412.
8. Duan, L., L. Campitelli, X. H. Fan, Y. H. C. Leung, D. Vijaykrishna, J. X. Zhang, I. Donatelli, M. Delogu, K. S. Li, E. Foni, C. Chiapponi, W. L. Wu, H. Kai, R. G. Webster, K. F. Shortridge, J. S. M. Peiris, G. J. D. Smith, H. Chen, and Y. Guan. 2007. Characterization of low pathogenic H5 subtype influenza viruses from Eurasia: implications for the origin of highly pathogenic H5N1 viruses. J. Virol. 81:7529-7539.
9. Ducatez, M. F., C. M. Olinger, A. A. Owoade, S. DeLandtsheer, W. Ammerlaan, H. G. M. Niesters, A. D. M. E. Osterhaus, R. A. M. Fouchier, and C. P. Muller. 2006. Introductions of H5N1 in Nigeria. Nature 442:37.
10. Ellis, T. M., R. B. Bousneld, L. A. Bissett, K. C. Dyrting, G. S. M. Luk, S. T. Tsim, K. Strum-Ramirez, R. G. Webster, Y. Guan, and J. S. M. Peiris. 2004. Investigation of outbreaks of highly pathogenic H5N1 avian influenza in waterfowl and wild birds in Hong Kong in late 2002. Avian Pathol. 33:492-505.
11. Food and Agricultural Organization of the United Nations. 2007. Avian Influenza Disease Emergency Bulletin, issue 46. http://www.fao.org/docs/ eims/upload//228650/AlDENews_may07_no46.pdf.
12. Guan, Y., M. Peiris, K. F. Kong, K. C. Dyrting, T. M. Ellis, T. Sit, L. J. Zhang, and K. F. Shortridge. 2002. H5N1 influenza viruses isolated from geese in southeastern China: evidence for genetic reassortment and interspecies transmission to ducks. Virology 292:16-23.
13. Guan, Y., J. S. M. Peiris, A. S. Lipatov, T. M. Ellis, K. C. Dyrting, S. Krauss, L. J. Zhang, R. G. Webster, and K. F. Shortridge. 2002. Emergence of multiple genotypes of H5N1 avian influenza viruses in Hong Kong SAR. Proc. Natl. Acad. Sci. USA 99:8950-8955.
14. Guan, Y., K. F. Shortridge, S. Krauss, and R. G. Webster. 1999. Molecular characterization of H9N2 influenza viruses: were they the donors of the "internal" genes of H5N1 viruses in Hong Kong? Proc. Natl. Acad. Sci. USA 16:9363-9367.
15. Guan, Y., K. F. Shortridge, S. Krauss, P. S. Chin, K. C. Dyrting, T. M. Ellis, R. G. Webster, and J. S. M. Peiris. 2000. H9N2 influenza viruses possessing H5N1-like internal genomes continue to circulate in poultry in southeastern China. J. Virol. 74:9372-9380.
16. Ha, Y., D. J. Stevens, J. J. Skehel, and D. C. Wiley. 2001. X-ray structures of H5 avian and H9 swine influenza virus hemagglutinins bound to avian and human receptor analogs. Proc. Natl. Acad. Sci. USA 98:11181-11186.
17. Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
18. Huelsenbeck, J. P., and F. R. Ronquist. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
19. Kruskal, J. B. 1964. Nonmetric multidimensional scaling: a numerical method. Psychometrika 29:115-129.
20. Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: an integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5:150-163.
21. Lee, C. W., D. L. Suarez, T. M. Tumpey, H. W. Sung, Y. K. Kwon, Y. J. Lee, J. G. Choi, S. J. Joh, M. C. Kim, E. K. Lee, J. M. Park, X. Lu, J. M. Katz, E. Spackman, D. E. Swayne, and J. H. Kim. 2005. Characterization of highly pathogenic H5N1 avian influenza A viruses isolated from South Korea. J. Virol. 79:3692-3702.
22. Li, K. S., Y. Guan, J. Wang, G. J. D. Smith, K. M. Xu, L. Duan, A. P. Rahardjo, P. Puthavathana, C. Buranathai, T. D. Nguyen, A. T. S. Estoepangestie, A. Chaisingh, P. Auewarakul, H. T. Long, N. T. H. Hanh, R. J. Webby, L. L. M. Poon, H. Chen, K. F. Shortridge, K. Y. Yuen, R. G. Webster, and J. S. M. Pieris. 2004. Genesis of highly pathogenic and potentially pandemic H5N1 influenza virus in eastern Asia. Nature 430:209-213.
23. Mase, M., M. Eto, N. Tanimura, K. Imai, K. Tsukamoto, T. Horimoto, Y. Kawaoka, and S. Yamaguchi. 2005. Isolation of a genotypically unique H5N1 influenza virus from duck meat imported into Japan from China. Virology 339:101-109.
24. Nylander, J. A. A. 2004. MRMODELTEST 2. Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.
25. Scholtissek, C., G. Quack, H. D. Klenk, and R. G. Webster. 1998. How to overcome resistance of influenza A viruses against adamantane derivatives. Antivir. Res. 37:83-95.
26. Smith, G. J. D., X. H. Fan, J. Wang, K. S. Li, K. Qin, J. X. Zhang, D. Vijaykrishna, C. L. Cheung, K. Huang, J. M. Rayner, J. S. M. Peiris, H. Chen, R. G. Webster, and Y. Guan. 2006. Emergence and predominance of an H5N1 influenza variant in China. Proc. Natl. Acad. Sci. USA 103:16936-16941.
27. Smith, G. J. D., T. S. P. Naipospos, T. D. Nguyen, M. D. de Jong, D. Vijaykrishna, T. B. Usman, S. S. Hassan, T. V. Nguyen, T. V. Dao, N. A. Bui, Y. H. C. Leung, C. L. Cheung, J. M. Rayner, J. X. Zhang, L. J. Zhang, L. L. M. Poon, K. S. Li, V. C. Nguyen, T. T. Hien, J. Farrar, R. G. Webster, H. Chen, J. S. M. Peiris, and Y. Guan. 2006. Evolution and adaptation of H5N1 influenza virus in avian and human hosts in Indonesia and Vietnam. Virology 350:258-268.
28. Sokal, R. R., and C. D. Michener. 1958. A statistical method for evaluating systematic relationships. University of Kansas Science Bulletin 38:1409-1438.
29. Stevens, J., O. Blixt, T. M. Tumpey, J. K. Taubenberger, J. C. Paulson, and I. A. Wilson. 2006. Structure and receptor specificity of the hemagglutinin from an H5N1 influenza virus. Science 312:404-410.
30. Subbarao, K., A. Klimov, J. Katz, H. Regnery, W. Lim, H. Hall, M. Perdue, D. Swayne, C. Bender, J. Huang, M. Hemphill, T. Rowe, M. Shaw, X. Xu, K. Fukuda, and N. Cox. 1998. Characterization of an avian influenza A (H5N1) virus isolated from a child with a fatal respiratory illness. Science 279:393-396.
31. Swofford, D. L. 2001. PAUP*: phylogenetic analysis using parsimony (and other methods) 4.0 beta. Sinauer Associates, Sunderland, MA.
32. Taubenberger, J. K., A. H. Reid, R. M. Lourens, R. Wang, G. Jin, and T. G. Fanning. 2005. Characterization of the 1918 influenza virus polymerase genes. Nature 437:889-893.
33. Treanor, J. J., F. G. Hayden, P. S. Vrooman, R. Barbarash, R. Bettis, D. Riff, S. Singh, N. Kinnersley, P. Ward, and R. G. Mills. 2000. Efficacy and safety of the oral neuraminidase inhibitor oseltamivir in treating acute influenza: a randomized controlled trial. JAMA 283:1016-1024.
34. Wallace, R. G., H. HoDac, R. H. Lathrop, and W. M. Fitch. 2007. A statistical phylogeography of influenza A H5N1. Proc. Natl. Acad. Sci. USA 104:4473-4478.
35. Webster, R. G., W. J. Bean, O. T. Gorman, T. M. Chambers, and Y. Kawaoka. 1992. Evolution and ecology of influenza A viruses. Microbiol. Rev. 56:152-179.
36. Webster, R. G., Y. Guan, M. Peiris, D. Walker, S. Krauss, N. N. Zhou, E. A. Govorkova, T. M. Ellis, K. C. Dyrting, T. Sit, D. R. Perez, and K. F. Shortridge. 2002. Characterization of H5N1 influenza viruses that continue to circulate in geese in southeastern China. J. Virol. 76:118-126.
37. World Health Organization. 2007. Antigenic and genetic characteristics of H5N1 viruses and candidate H5N1 vaccine viruses developed for potential use as pre-pandemic vaccines. World Health Organization, Geneva, Switzerland. http://www.who.int/csr/disease/avian_influenza/guidelinestopics/en/ index5.html.
38. Xu, K. M., G. J. D. Smith, J. Bahl, L. Duan, H. Tai, D. Vijaykrishna, J. Wang, J. X. Zhang, K. S. Li, X. H. Fan, R. G. Webster, H. Chen, J. S. M. Peiris, and Y. Guan. 2007. The genesis and evolution of H9N2 influenza viruses in poultry from southern China, 2000 to 2005. J. Virol. 81:10389-10401.
39. Xu, X., K. Subbarao, N. J. Cox, and Y. Guo. 1999. Genetic characterization of the pathogenic influenza A/Goose/Guangdong/1/96 (H5N1) virus: similarity of its hemagglutinin gene to those of H5N1 viruses from the 1997 outbreaks in Hong Kong. Virology 261:15-19.
40. Yamada, S., Y. Suzuki, T. Suzuki, M. Q. Le, C. A. Nidom, Y. S. Tagawa, Y. Muramoto, M. Ito, M. Kiso, T. Horimoto, K. Shinya, T. Sawada, M. Kiso, T. Usui, T. Murata, Y. Lin, A. Hay, L. F. Haire, D. J. Stevens, R. J. Russell, S. J. Gamblin, J. J. Skehel, and Y. Kawaoka. 2006. Hemagglutinin mutations responsible for the binding of H5N1 influenza A viruses to human type receptors. Nature 444:378-382.