Genetic variation of highly pathogenic H5N1 avian influenza viruses in vietnam shows both species-specific and spatiotemporal associations

Avian Diseases

Volumn 55, Issue 4, 2011, Pages 659-666

  Carrel, Margaret ^a   Wan, Xiu Feng ^b   Nguyen, Tung ^c   Emch, Michael ^d  

^a UNIVERSITY OF IOWA   (United States)

^b MISSISSIPPI STATE UNIVERSITY   (United States)

^c National Center for Veterinary Diagnostics   (Viet Nam)

^d The University of North Carolina at Chapel Hill   (United States)

Author keywords

analysis of variance; cluster analysis; ecology; genetic differentiation; H5N1 avian influenza; poultry

Indexed keywords

ANIMAL; ARTICLE; AVIAN INFLUENZA; CHICKEN; DUCK; GENETIC VARIABILITY; GENETICS; INFLUENZA VIRUS A H5N1; SPECIES DIFFERENCE; TIME; VIET NAM; VIROLOGY;

ANIMALS; CHICKENS; DUCKS; GENETIC VARIATION; INFLUENZA A VIRUS, H5N1 SUBTYPE; INFLUENZA IN BIRDS; SPECIES SPECIFICITY; TIME FACTORS; VIETNAM;

EID: 84055212299     PISSN: 00052086     EISSN: None     Source Type: Journal    
DOI: 10.1637/9785-051811-Reg.1     Document Type: Article

References (42)

1. Brown, J. D., D. E. Stallknecht, J. R. Beck, D. L. Suarez, and D. E. Swayne. Susceptibility of North American ducks and gulls to H5N1 highly pathogenic avian influenza viruses. Emerg. Infect. Dis. 12:1663-1670. 2006. (Pubitemid 44674241)
2. Brown, J. D., D. E. Swayne, R. J. Cooper, R. E. Burns, and D. E. Stallknecht. Persistence of H5 and H7 avian influenza viruses in water. Avian Dis. 51:285-289. 2007. (Pubitemid 46671294)
3. Capua, I., and S. Marangon. The challenge of controlling notifiable avian influenza by means of vaccination. Avian Dis. 51:317-322. 2007. (Pubitemid 46671300)
4. Chen, H., G. J. Smith, K. S. Li, J. Wang, X. H. Fan, J. M. Rayner, D. Vijaykrishna, J. X. Zhang, L. J. Zhang, C. T. Guo, C. L. Cheung, K. M. Xu, L. Duan, K. Huang, K. Qin, Y. H. Leung, W. L. Wu, H. R. Lu, Y. Chen, N. S. Xia, T. S. Naipospos, K. Y. Yuen, S. S. Hassan, S. Bahri, T. D. Nguyen, R. G. Webster, J. S. Peiris, and Y. Guan. Establishment of multiple sublineages of H5N1 influenza virus in Asia: Implications for pandemic control. Proc. Natl. Acad. Sci. U. S. A. 103:2845-2850. 2006.
5. Chumpolbanchorn, K., N. Suemanotham, N. Siripara, B. Puyati, and K. Chaichoune. The effect of temperature and UV light on infectivity of avian influenza virus (H5N1, Thai field strain) in chicken fecal manure. Southeast Asian J. Trop. Med. Public Health 37:102. 2006.
6. Cristalli, A., and I. Capua. Practical problems in controlling H5N1 high pathogenicity avian influenza at village level in Vietnam and introduction of biosecurity measures. Avian Dis. 51:461-462. 2007. (Pubitemid 46671331)
7. Domenech, J., G. Dauphin, J. Rushton, J. McGrane, J. Lubroth, A. Tripodi, J. Gilbert, and L. D. Sims. Experiences with vaccination in countries endemically infected with highly pathogenic avian influenza: The Food and Agriculture Organization perspective. Rev. Sci. Tech. 28:293-305. 2009.
8. Dung Nguyen, T., T. Vinh Nguyen, D. Vijaykrishna, R. G. Webster, Y. Guan, J. S. Malik Peiris, and G. J. Smith. Multiple sublineages of influenza A virus (H5N1), Vietnam, 2005-2007. Emerg. Infect. Dis. 14:632-636. 2008. (Pubitemid 351520866)
9. Escorcia, M., L. Vázquez, S. T. Méndez, A. Rodríguez-Ropón, E. Lucio, and G. M. Nava. Avian influenza: genetic evolution under vaccination pressure. Virol. J. 5:15. 2008.
10. Fourment, M., and M. Gibbs. PATRISTIC: A program for calculating patristic distances and graphically comparing the components of genetic change. BMC Evol. Biol. 6:1. 2006.
11. Fraley, C., and A. Raftery. mclust: Model-Based Clustering/Normal Mixture Modeling. R package version 3.4.1. 2010.
12. Gambotto, A., S. M. Barratt-Boyes, M. D. de Jong, G. Neumann, and Y. Kawaoka. Human infection with highly pathogenic H5N1 influenza virus. Lancet 371:1464-1475. 2008. (Pubitemid 351618340)
13. Gilbert, M., P. Chaitaweesub, T. Parakamawongsa, S. Premashthira, T. Tiensin, W. Kalpravidh, H. Wagner, and J. Slingenbergh. Free-grazing ducks and highly pathogenic avian influenza, Thailand. Emerg. Infect. Dis. 12:227-234. 2006.
14. Henning, K. A., J. Henning, J. Morton, N. T. Long, N. T. Ha, and J. Meers. Farm-and flock-level risk factors associated with highly pathogenic avian influenza outbreaks on small holder duck and chicken farms in the Mekong Delta of Viet Nam. Prev. Vet. Med. 91:179-188. 2009.
15. Hulse-Post, D., J. Franks, K. Boyd, R. Salomon, E. Hoffmann, H. L. Yen, R. J. Webby, D. Walker, T. D. Nguyen, and R. G. Webster. Molecular changes in the polymerase genes (PA and PB1) associated with high pathogenicity of H5N1 influenza virus in mallard ducks. J. Virol. 81:8515. 2007.
16. Kim, J. K., N. J. Negovetich, H. L. Forrest, and R. G. Webster. Ducks: The ''Trojan horses'' of H5N1 influenza. Influenza Other Respi. Viruses 3:181-182. 2009.
17. Middleton, D., J. Bingham, P. Selleck, S. Lowther, L. Gleeson, P. Lehrbach, and S. Robinson. Efficacy of inactivated vaccines against H5N1 avian influenza infection in ducks. Virology 359:66-71. 2007. (Pubitemid 46215691)
18. Muramoto, Y., T. Q. Le, L. S. Phuong, T. Nguyen, T. H. Nguyen, Y. Sakai-Tagawa, K. Iwatsuki-Horimoto, T. Horimoto, H. Kida, and Y. Kawaoka. Molecular characterization of the hemagglutinin and neuraminidase genes of H5N1 influenza A viruses isolated from poultry in Vietnam from 2004 to 2005. J. Vet. Med. Sci. 68:527-531. 2006. (Pubitemid 43865176)
19. Nguyen, D. C., T. M. Uyeki, S. Jadhao, T. Maines, M. Shaw, Y. Matsuoka, C. Smith, T. Rowe, X. Lu, H. Hall, X. Xu, A. Balish, A. Klimov, T. M. Tumpey, D. E. Swayne, L. P. Huynh, H. K. Nghiem, H. H. Nguyen, L. T. Hoang, N. J. Cox, and J. M. Katz. Isolation and characterization of avian influenza viruses, including highly pathogenic H5N1, from poultry in live bird markets in Hanoi, Vietnam, in 2001. J. Virol. 79:4201-4212. 2005. (Pubitemid 40388358)
20. Pantin-Jackwood, M. J., and D. E. Swayne. Pathobiology of Asian highly pathogenic avian influenza H5N1 virus infections in ducks. Avian Dis. 51:250-259. 2007. (Pubitemid 46671287)
21. Peiris, J. S., M. D. de Jong, and Y. Guan. Avian influenza virus (H5N1): A threat to human health. Clin. Microbiol. Rev. 20:243-267. 2007. (Pubitemid 46709304)
22. Pfeiffer, D. U., P. Q. Minh, V. Martin, M. Epprecht, and M. J. Otte. An analysis of the spatial and temporal patterns of highly pathogenic avian influenza occurrence in Vietnam using national surveillance data. Vet. J. 174:302-309. 2007. (Pubitemid 47424140)
23. Pfeiffer, J., D. L. Suarez, L. Sarmento, T. L. To, T. Nguyen, and M. J. Pantin-Jackwood. Efficacy of commercial vaccines in protecting chickens and ducks against H5N1 highly pathogenic avian influenza viruses from Vietnam. Avian Dis. 54:262-271. 2010.
24. R Development Core Team. R: A language and environment for statistical computing. Vienna, Austria. 2011.
25. Shortridge, K. F., and C. H. Stuart-Harris. An influenza epicentre? Lancet 2:812-813. 1982. (Pubitemid 12069002)
26. Shortridge, K. F., N. N. Zhou, Y. Guan, P. Gao, T. Ito, Y. Kawaoka, S. Kodihalli, S. Krauss, D. Markwell, and K. G. Murti. Characterization of avian H5N1 influenza viruses from poultry in Hong Kong. Virology 252:331-342. 1998. (Pubitemid 29013415)
27. Sims, L. D., J. Domenech, C. Benigno, S. Kahn, A. Kamata, J. Lubroth, V. Martin, and P. Roeder. Origin and evolution of highly pathogenic H5N1 avian influenza in Asia. Vet. Rec. 157:159. 2005.
28. Smith, G. J., T. S. Naipospos, T. D. Nguyen, M. D. de Jong, D. Vijaykrishna, T. B. Usman, S. S. Hassan, T. V. Nguyen, T. V. Dao, N. A. Bui, Y. H. Leung, C. L. Cheung, J. M. Rayner, J. X. Zhang, L. J. Zhang, L. L. Poon, K. S. Li, V. C. Nguyen, T. T. Hien, J. Farrar, R. G. Webster, H. Chen, J. S. Peiris, and Y. Guan. Evolution and adaptation of H5N1 influenza virus in avian and human hosts in Indonesia and Vietnam. Virology 350:258-268. 2006. (Pubitemid 44218982)
29. Swayne, D. E. Understanding the complex pathobiology of high pathogenicity avian influenza viruses in birds. Avian Dis. 51:242-249. 2007. (Pubitemid 46671286)
30. Swayne, D. E., and J. M. Pantin-Jackwood. Pathogenicity of avian influenza viruses in poultry. Dev. Biol. (Basel) 124:61-67. 2006. (Pubitemid 43258900)
31. Thorson, A., M. Petzold, T. K. Nguyen, and K. Ekdahl. Is exposure to sick or dead poultry associated with flulike illness?: A population-based study from a rural area in Vietnam with outbreaks of highly pathogenic avian influenza. Arch. Intern. Med. 166:119-123. 2006. (Pubitemid 43063851)
32. Tian, G., S. Zhang, Y. Li, Z. Bu, P. Liu, J. Zhou, C. Li, J. Shi, K. Yu, and H. Chen. Protective efficacy in chickens, geese and ducks of an H5N1- inactivated vaccine developed by reverse genetics. Virology 341:153-162. 2005. (Pubitemid 41356582)
33. Tiensin, T., M. Nielen, T. Songserm,W. Kalpravidh, P. Chaitaweesub, A. Amonsin, S. Chotiprasatintara, A. Chaisingh, S. Damrongwatanapokin, S. Wongkasemjit, C. Antarasena, V. Songkitti, K. Chanachai, W. Thanapongtham, and J. A. Stegeman. Geographic and temporal distribution of highly pathogenic avian influenza A virus (H5N1) in Thailand, 2004-2005: An overview. Avian Dis. 51:182-188. 2007. (Pubitemid 46671277)
34. Van der Goot, J. A., G. Koch, M. C. M. De Jong, and M. Van Boven. Quantification of the effect of vaccination on transmission of avian influenza (H7N7) in chickens. Proc. Natl. Acad. Sci. U. S. A. 102:18141. 2005.
35. Veits, J., A. Römer-Oberdörfer, D. Helferich, M. Durban, Y. Suezer, G. Sutter, and T. C. Mettenleiter. Protective efficacy of several vaccines against highly pathogenic H5N1 avian influenza virus under experimental conditions. Vaccine 26:1688-1696. 2008.
36. Wallace, R. G., and W. M. Fitch. Influenza A H5N1 immigration is filtered out at some international borders. PLoS ONE 3:e1697. 2008.
37. Wan, X. F., T. Nguyen, C. T. Davis, C. B. Smith, Z. M. Zhao, M. Carrel, K. Inui, H. T. Do, D. T. Mai, S. Jadhao, A. Balish, B. Shu, F. Luo, M. Emch, Y. Matsuoka, S. E. Lindstrom, N. J. Cox, C. V. Nguyen, A. Klimov, and R. O. Donis. Evolution of highly pathogenic H5N1 avian influenza viruses in Vietnam between 2001 and 2007. PLoS ONE 3:e3462. 2008.
38. Webster, R. G., D. J. Hulse-Post, K. M. Sturm-Ramirez, Y. Guan, M. Peiris, G. Smith, and H. Chen. Changing epidemiology and ecology of highly pathogenic avian H5N1 influenza viruses. Avian Dis. 51:269-272. 2007. (Pubitemid 46671290)
39. Webster, R. G., R. J. Webby, E. Hoffmann, J. Rodenberg, M. Kumar, H. J. Chu, P. Seiler, S. Krauss, and T. Songserm. The immunogenicity and efficacy against H5N1 challenge of reverse genetics-derived H5N3 influenza vaccine in ducks and chickens. Virology 351:303-311. 2006. (Pubitemid 44108059)
40. [WHO] World Health Organization/World Organisation for Animal Health/Food and Agriculture Organization H5N1 Evolution Working Group. Toward a unified nomenclature system for highly pathogenic avian influenza virus (H5N1). Emerg. Infect. Dis. 14:e1. 2008. doi: 10.3201/ eid1407.071681
41. [WHO] World Health Organization. Cumulative number of confirmed human cases of avian influenza A (H5N1) reported to WHO. 2011. Available from: http://www.who.int/cst/disease/avian-influenza/ country/cases-table-2011-08-09/ en/index.html
42. [O.I.E.] World Organisation for Animal Health. Outbreaks of highly pathogenic avian influenza (subtype H5N1) in poultry, from 2003 to 24 October 2011. Available from: http://www.oie.int/fileadmin/Home/eng/ Animal-Health-in-the-World/docs/pdf/graph-avian-influenza/graphs-HPAI-24-10- 2011.pdf