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Volumn 14, Issue 1, 2013, Pages

MRNA-Seq and microarray development for the Grooved carpet shell clam, Ruditapes decussatus: A functional approach to unravel host -parasite interaction

Author keywords

[No Author keywords available]

Indexed keywords

HYDROLASE; LECTIN; MESSENGER RNA; PROTEINASE; TRANSCRIPTOME; MICROSATELLITE DNA;

EID: 84886388970     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-741     Document Type: Article
Times cited : (39)

References (96)
  • 3
    • 0024711717 scopus 로고
    • Fine structure of Perkinsus atlanticus n. sp. (Apicomplexa, Perkinsea) parasite of the clam Ruditapes decussatus from Portugal
    • Azevedo C. Fine structure of Perkinsus atlanticus n. sp. (Apicomplexa, Perkinsea) parasite of the clam Ruditapes decussatus from Portugal. J Parasitol 1989, 75(4):627-635.
    • (1989) J Parasitol , vol.75 , Issue.4 , pp. 627-635
    • Azevedo, C.1
  • 4
    • 4744368358 scopus 로고    scopus 로고
    • Perkinsus sp. infestation in carpet-shell clams, Ruditapes decussatus (L), along the Portuguese coast. Results from a 2-year survey
    • Leite RB, Afonso R, Cancela ML. Perkinsus sp. infestation in carpet-shell clams, Ruditapes decussatus (L), along the Portuguese coast. Results from a 2-year survey. Aquaculture 2004, 240(1-4):39-53.
    • (2004) Aquaculture , vol.240 , Issue.1-4 , pp. 39-53
    • Leite, R.B.1    Afonso, R.2    Cancela, M.L.3
  • 5
    • 0000385483 scopus 로고
    • Seguimiento del protozoo Perkinsus sp., en las poblaciones de Tapes decussatus y Tapes semidecussatus del Delta del Ebro
    • Spain: Universidad de Barcelona, Castelló F, Calderer AS, de la Rapita C
    • Santmarti MM, Garcia VJ JM, Pech A, Durfort M. Seguimiento del protozoo Perkinsus sp., en las poblaciones de Tapes decussatus y Tapes semidecussatus del Delta del Ebro. V Congreso Nacional de Acuicultura 1995, 260-265. Spain: Universidad de Barcelona, Castelló F, Calderer AS, de la Rapita C.
    • (1995) V Congreso Nacional de Acuicultura , pp. 260-265
    • Santmarti, M.M.1    Garcia, V.J.J.M.2    Pech, A.3    Durfort, M.4
  • 6
    • 0035956235 scopus 로고    scopus 로고
    • Spatial distribution of the protozoan parasite, Perkinsus sp., found in the manila clam, Ruditapes philippinarum in Korea
    • Park KI, Choi KS. Spatial distribution of the protozoan parasite, Perkinsus sp., found in the manila clam, Ruditapes philippinarum in Korea. Aquaculture 2001, 203:9-22.
    • (2001) Aquaculture , vol.203 , pp. 9-22
    • Park, K.I.1    Choi, K.S.2
  • 7
    • 0005897467 scopus 로고    scopus 로고
    • Prevalence of Perkinsus sp. in the Manila clam Ruditapes philippinarum along northern coast of Yellow Sea in China
    • Liang YB, Zhang XC, Wang LJ, Yang B, Zhang Y, Cai CL. Prevalence of Perkinsus sp. in the Manila clam Ruditapes philippinarum along northern coast of Yellow Sea in China. Oceanologia et Limnologia Sinica 2001, 32:502-511.
    • (2001) Oceanologia et Limnologia Sinica , vol.32 , pp. 502-511
    • Liang, Y.B.1    Zhang, X.C.2    Wang, L.J.3    Yang, B.4    Zhang, Y.5    Cai, C.L.6
  • 8
    • 0036071345 scopus 로고    scopus 로고
    • Infection intensity, prevalence, and histopathology of Perkinsus sp. in the Manila clam, Ruditapes philippinarum, in Isahaya Bay, Japan
    • Choi K, Park K, Lee K, Matsuoka K. Infection intensity, prevalence, and histopathology of Perkinsus sp. in the Manila clam, Ruditapes philippinarum, in Isahaya Bay, Japan. J Shellfish Res 2002, 21(1):119-125.
    • (2002) J Shellfish Res , vol.21 , Issue.1 , pp. 119-125
    • Choi, K.1    Park, K.2    Lee, K.3    Matsuoka, K.4
  • 9
    • 0002835068 scopus 로고    scopus 로고
    • The structure of Perkinsus marinus (Mackin, Owen and Collier, 1950) Levine, 1978 with comments on taxonomy and phylogeny of Perkinsus spp
    • Perkins FO. The structure of Perkinsus marinus (Mackin, Owen and Collier, 1950) Levine, 1978 with comments on taxonomy and phylogeny of Perkinsus spp. J Shellfish Res 1996, 15:67-87.
    • (1996) J Shellfish Res , vol.15 , pp. 67-87
    • Perkins, F.O.1
  • 10
    • 33746283951 scopus 로고    scopus 로고
    • Analysis of EST and lectin expressions in hemocytes of Manila clams (Ruditapes philippinarum) (Bivalvia: Mollusca) infected with Perkinsus olseni
    • Kang YS, Kim YM, Park KI, Kim Cho S, Choi KS, Cho M. Analysis of EST and lectin expressions in hemocytes of Manila clams (Ruditapes philippinarum) (Bivalvia: Mollusca) infected with Perkinsus olseni. Dev Comp Immunol 2006, 30(12):1119-1131.
    • (2006) Dev Comp Immunol , vol.30 , Issue.12 , pp. 1119-1131
    • Kang, Y.S.1    Kim, Y.M.2    Park, K.I.3    Kim Cho, S.4    Choi, K.S.5    Cho, M.6
  • 11
    • 1842844345 scopus 로고    scopus 로고
    • Purification and characterisation of a lectin isolated from the Manila clam Ruditapes philippinarum in Korea
    • Bulgakov AA, Park KI, Choi KS, Lim HK, Cho M. Purification and characterisation of a lectin isolated from the Manila clam Ruditapes philippinarum in Korea. Fish Shellfish Immunol 2004, 16(4):487-499.
    • (2004) Fish Shellfish Immunol , vol.16 , Issue.4 , pp. 487-499
    • Bulgakov, A.A.1    Park, K.I.2    Choi, K.S.3    Lim, H.K.4    Cho, M.5
  • 12
    • 46549085873 scopus 로고    scopus 로고
    • Noble tandem-repeat galectin of Manila clam Ruditapes philippinarum is induced upon infection with the protozoan parasite Perkinsus olseni
    • Kim JY, Kim YM, Cho SK, Choi KS, Cho M. Noble tandem-repeat galectin of Manila clam Ruditapes philippinarum is induced upon infection with the protozoan parasite Perkinsus olseni. Developmental & Comparative Immunology 2008, 32(10):1131-1141.
    • (2008) Developmental & Comparative Immunology , vol.32 , Issue.10 , pp. 1131-1141
    • Kim, J.Y.1    Kim, Y.M.2    Cho, S.K.3    Choi, K.S.4    Cho, M.5
  • 13
    • 33748750586 scopus 로고    scopus 로고
    • Lectin from the Manila clam Ruditapes philippinarum is induced upon infection with the protozoan parasite Perkinsus olseni
    • Kim YM, Park KI, Choi KS, Alvarez RA, Cummings RD, Cho M. Lectin from the Manila clam Ruditapes philippinarum is induced upon infection with the protozoan parasite Perkinsus olseni. J Biol Chem 2006, 281(37):26854-26864.
    • (2006) J Biol Chem , vol.281 , Issue.37 , pp. 26854-26864
    • Kim, Y.M.1    Park, K.I.2    Choi, K.S.3    Alvarez, R.A.4    Cummings, R.D.5    Cho, M.6
  • 14
    • 33747760723 scopus 로고    scopus 로고
    • A novel slow-tight binding serine protease inhibitor from eastern oyster (Crassostrea virginica) plasma inhibits perkinsin, the major extracellular protease of the oyster protozoan parasite Perkinsus marinus
    • Xue QG, Waldrop GL, Schey KL, Itoh N, Ogawa M, Cooper RK, Losso JN, La Peyre JF. A novel slow-tight binding serine protease inhibitor from eastern oyster (Crassostrea virginica) plasma inhibits perkinsin, the major extracellular protease of the oyster protozoan parasite Perkinsus marinus. Comp Biochem Physiol B Biochem Mol Biol 2006, 145(1):16-26.
    • (2006) Comp Biochem Physiol B Biochem Mol Biol , vol.145 , Issue.1 , pp. 16-26
    • Xue, Q.G.1    Waldrop, G.L.2    Schey, K.L.3    Itoh, N.4    Ogawa, M.5    Cooper, R.K.6    Losso, J.N.7    La Peyre, J.F.8
  • 15
    • 0027084811 scopus 로고
    • Principal parasites observed in clams, Ruditapes decussatus (L.), Ruditapes philippinarum (Adams et Reeve), Venerupis pullastra (Montagu) and Venerupis aureus (Gmelin), from the Huelva coast (S.W. Spain)
    • Navas JI, Castillo MC, Vera P, Ruiz-Rico M. Principal parasites observed in clams, Ruditapes decussatus (L.), Ruditapes philippinarum (Adams et Reeve), Venerupis pullastra (Montagu) and Venerupis aureus (Gmelin), from the Huelva coast (S.W. Spain). Aquaculture 1992, 107:193-199.
    • (1992) Aquaculture , vol.107 , pp. 193-199
    • Navas, J.I.1    Castillo, M.C.2    Vera, P.3    Ruiz-Rico, M.4
  • 16
    • 80054058521 scopus 로고    scopus 로고
    • Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control
    • Coyne R, Hannick L, Shanmugam D, Hostetler J, Brami D, Joardar V, Johnson J, Radune D, Singh I, Kumar U, et al. Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control. Genome Biology 2011, 12(10):R100.
    • (2011) Genome Biology , vol.12 , Issue.10
    • Coyne, R.1    Hannick, L.2    Shanmugam, D.3    Hostetler, J.4    Brami, D.5    Joardar, V.6    Johnson, J.7    Radune, D.8    Singh, I.9    Kumar, U.10
  • 17
    • 79952238692 scopus 로고    scopus 로고
    • Wolbachia Infections in Anopheles gambiae Cells: Transcriptomic Characterization of a Novel Host-Symbiont Interaction
    • Hughes GL, Ren X, Ramirez JL, Sakamoto JM, Bailey JA, Jedlicka AE, Rasgon JL. Wolbachia Infections in Anopheles gambiae Cells: Transcriptomic Characterization of a Novel Host-Symbiont Interaction. PLoS Pathog 2011, 7(2):e1001296.
    • (2011) PLoS Pathog , vol.7 , Issue.2
    • Hughes, G.L.1    Ren, X.2    Ramirez, J.L.3    Sakamoto, J.M.4    Bailey, J.A.5    Jedlicka, A.E.6    Rasgon, J.L.7
  • 19
    • 79951811328 scopus 로고    scopus 로고
    • Transcriptional changes in Giardia during host-parasite interactions
    • Ringqvist E, Avesson L, Söderbom F, Svärd SG. Transcriptional changes in Giardia during host-parasite interactions. Int J Parasitol 2011, 41(3-4):277-285.
    • (2011) Int J Parasitol , vol.41 , Issue.3-4 , pp. 277-285
    • Ringqvist, E.1    Avesson, L.2    Söderbom, F.3    Svärd, S.G.4
  • 23
    • 84867088834 scopus 로고    scopus 로고
    • The oyster genome reveals stress adaptation and complexity of shell formation
    • Zhang G, Fang X, Guo X, Li L, Luo R, Xu F, Yang P, Zhang L, Wang X, Qi H, et al. The oyster genome reveals stress adaptation and complexity of shell formation. Nature 2012, 490(7418):49-54.
    • (2012) Nature , vol.490 , Issue.7418 , pp. 49-54
    • Zhang, G.1    Fang, X.2    Guo, X.3    Li, L.4    Luo, R.5    Xu, F.6    Yang, P.7    Zhang, L.8    Wang, X.9    Qi, H.10
  • 25
    • 84857234393 scopus 로고    scopus 로고
    • Gene Expression Profiling of Atlantic Cod Gadus morhua Embryogenesis Using Microarray
    • Drivenes T, Taranger G, Edvardsen R. Gene Expression Profiling of Atlantic Cod Gadus morhua Embryogenesis Using Microarray. Marine Biotechnology 2012, 14:167-176.
    • (2012) Marine Biotechnology , vol.14 , pp. 167-176
    • Drivenes, T.1    Taranger, G.2    Edvardsen, R.3
  • 26
    • 84866502558 scopus 로고    scopus 로고
    • Sequencing and Characterization of Striped Venus Transcriptome Expand Resources for Clam Fishery Genetics
    • Coppe A, Bortoluzzi S, Murari G, Marino IAM, Zane L, Papetti C. Sequencing and Characterization of Striped Venus Transcriptome Expand Resources for Clam Fishery Genetics. PLoS ONE 2012, 7(9):e44185.
    • (2012) PLoS ONE , vol.7 , Issue.9
    • Coppe, A.1    Bortoluzzi, S.2    Murari, G.3    Marino, I.A.M.4    Zane, L.5    Papetti, C.6
  • 28
    • 33646859902 scopus 로고    scopus 로고
    • Bivalve genomics
    • Saavedra C, Bachère E. Bivalve genomics. Aquaculture 2006, 256(1-4):1-14.
    • (2006) Aquaculture , vol.256 , Issue.1-4 , pp. 1-14
    • Saavedra, C.1    Bachère, E.2
  • 29
    • 37449014878 scopus 로고    scopus 로고
    • Development and evaluation of microsatellite markers for identification of individual Greenshell™ mussels (Perna canaliculus) in a selective breeding programme
    • MacAvoy ES, Wood AR, Gardner JPA. Development and evaluation of microsatellite markers for identification of individual Greenshell™ mussels (Perna canaliculus) in a selective breeding programme. Aquaculture 2008, 274(1):41-48.
    • (2008) Aquaculture , vol.274 , Issue.1 , pp. 41-48
    • MacAvoy, E.S.1    Wood, A.R.2    Gardner, J.P.A.3
  • 30
    • 78650309881 scopus 로고    scopus 로고
    • Comparative genomic analysis reveals species-dependent complexities that explain difficulties with microsatellite marker development in molluscs
    • McInerney CE, Allcock AL, Johnson MP, Bailie DA, Prodohl PA. Comparative genomic analysis reveals species-dependent complexities that explain difficulties with microsatellite marker development in molluscs. Heredity 2011, 106(1):78-87.
    • (2011) Heredity , vol.106 , Issue.1 , pp. 78-87
    • McInerney, C.E.1    Allcock, A.L.2    Johnson, M.P.3    Bailie, D.A.4    Prodohl, P.A.5
  • 31
    • 34547168853 scopus 로고    scopus 로고
    • EST-SSRs as a resource for population genetic analyses
    • Ellis JR, Burke JM. EST-SSRs as a resource for population genetic analyses. Heredity 2007, 99(2):125-132.
    • (2007) Heredity , vol.99 , Issue.2 , pp. 125-132
    • Ellis, J.R.1    Burke, J.M.2
  • 32
    • 80053314292 scopus 로고    scopus 로고
    • Mining of EST-SSR markers in clam Meretrix meretrix larvae from 454 shotgun transcriptome
    • Wang H, Huan P, Lu X, Liu B. Mining of EST-SSR markers in clam Meretrix meretrix larvae from 454 shotgun transcriptome. Genes & Genetic Systems 2011, 86(3):197-205.
    • (2011) Genes & Genetic Systems , vol.86 , Issue.3 , pp. 197-205
    • Wang, H.1    Huan, P.2    Lu, X.3    Liu, B.4
  • 33
    • 84888003833 scopus 로고    scopus 로고
    • MISA SSR
    • MISA SSR. [http://pgrc.ipk-gatersleben.de/misa/].
  • 34
    • 36849035794 scopus 로고    scopus 로고
    • Msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design
    • Faircloth BC. msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design. Molecular Ecology Resources 2008, 8(1):92-94.
    • (2008) Molecular Ecology Resources , vol.8 , Issue.1 , pp. 92-94
    • Faircloth, B.C.1
  • 37
    • 84866748375 scopus 로고    scopus 로고
    • A manganese superoxide dismutase (MnSOD) from Ruditapes philippinarum: Comparative structural- and expressional-analysis with copper/zinc superoxide dismutase (Cu/ZnSOD) and biochemical analysis of its antioxidant activities
    • Umasuthan N, Bathige SDNK, Revathy KS, Lee Y, Whang I, Choi CY, Park H-C, Lee J. A manganese superoxide dismutase (MnSOD) from Ruditapes philippinarum: Comparative structural- and expressional-analysis with copper/zinc superoxide dismutase (Cu/ZnSOD) and biochemical analysis of its antioxidant activities. Fish & Shellfish Immunology 2012, 33(4):753-765.
    • (2012) Fish & Shellfish Immunology , vol.33 , Issue.4 , pp. 753-765
    • Umasuthan, N.1    Bathige, S.D.N.K.2    Revathy, K.S.3    Lee, Y.4    Whang, I.5    Choi, C.Y.6    Park, H.-C.7    Lee, J.8
  • 38
    • 84888000943 scopus 로고    scopus 로고
    • NCBI GEO database
    • NCBI GEO database. [http://www.ncbi.nlm.nih.gov/geo/].
  • 39
    • 67649861898 scopus 로고    scopus 로고
    • Identification of the molecules involved in zebra mussel (Dreissena polymorpha) hemocytes host defense
    • Xu W, Faisal M. Identification of the molecules involved in zebra mussel (Dreissena polymorpha) hemocytes host defense. Comp Biochem Physiol B Biochem Mol Biol 2009, 154(1):143-149.
    • (2009) Comp Biochem Physiol B Biochem Mol Biol , vol.154 , Issue.1 , pp. 143-149
    • Xu, W.1    Faisal, M.2
  • 40
    • 12844267504 scopus 로고    scopus 로고
    • Methionine sulfoxide reductases: ubiquitous enzymes involved in antioxidant defense, protein regulation, and prevention of aging-associated diseases
    • Moskovitz J. Methionine sulfoxide reductases: ubiquitous enzymes involved in antioxidant defense, protein regulation, and prevention of aging-associated diseases. Biochim Biophys Acta 2005, 1703(2):213-219.
    • (2005) Biochim Biophys Acta , vol.1703 , Issue.2 , pp. 213-219
    • Moskovitz, J.1
  • 41
    • 34548512488 scopus 로고    scopus 로고
    • Exosomes Released from Infected Macrophages Contain Mycobacterium avium Glycopeptidolipids and Are Proinflammatory
    • Bhatnagar S, Schorey JS. Exosomes Released from Infected Macrophages Contain Mycobacterium avium Glycopeptidolipids and Are Proinflammatory. J Biol Chem 2007, 282(35):25779-25789.
    • (2007) J Biol Chem , vol.282 , Issue.35 , pp. 25779-25789
    • Bhatnagar, S.1    Schorey, J.S.2
  • 42
    • 77958086765 scopus 로고    scopus 로고
    • Exosomal membrane molecules are potent immune response modulators
    • Anand PK. Exosomal membrane molecules are potent immune response modulators. Communicative & Integrative Biology 2010, 3(5):405-408.
    • (2010) Communicative & Integrative Biology , vol.3 , Issue.5 , pp. 405-408
    • Anand, P.K.1
  • 43
    • 22244459929 scopus 로고    scopus 로고
    • Potential novel epitopes in the extracellular products of oyster homogenate-supplemented Perkinsus marinus cells are not detected by subtractive immunization
    • Earnhart CG, Kaattari SL. Potential novel epitopes in the extracellular products of oyster homogenate-supplemented Perkinsus marinus cells are not detected by subtractive immunization. J Parasitol 2005, 91(3):689-691.
    • (2005) J Parasitol , vol.91 , Issue.3 , pp. 689-691
    • Earnhart, C.G.1    Kaattari, S.L.2
  • 45
    • 0032832187 scopus 로고    scopus 로고
    • Isolation and characterization of Perkinsus marinus proteases using bacitracin-sepharose affinity chromatography
    • Faisal M, Schafhauser D, Garreis K, Elsayed E, La Peyre J. Isolation and characterization of Perkinsus marinus proteases using bacitracin-sepharose affinity chromatography. Comp Biochem Physiol B 1999, 123B(4):417-426.
    • (1999) Comp Biochem Physiol B , vol.123 B , Issue.4 , pp. 417-426
    • Faisal, M.1    Schafhauser, D.2    Garreis, K.3    Elsayed, E.4    La Peyre, J.5
  • 46
    • 0028797335 scopus 로고
    • Production of serine proteases by the oyster pathogen Perkinsus marinus (Apicomplexa) in vitro
    • La Peyre J, Schafhauser D, Rizkalla E, Faisal M. Production of serine proteases by the oyster pathogen Perkinsus marinus (Apicomplexa) in vitro. J Eukaryot Microbiol 1995, 42(5):544-551.
    • (1995) J Eukaryot Microbiol , vol.42 , Issue.5 , pp. 544-551
    • La Peyre, J.1    Schafhauser, D.2    Rizkalla, E.3    Faisal, M.4
  • 47
    • 0037396637 scopus 로고    scopus 로고
    • Host oyster tissue extracts modulate in vitro protease expression and cellular differentiation in the protozoan parasite, Perkinsus marinus
    • MacIntyre EA, Earnhart CG, Kaattari SL. Host oyster tissue extracts modulate in vitro protease expression and cellular differentiation in the protozoan parasite, Perkinsus marinus. Parasitology 2003, 126(Pt 4):293-302.
    • (2003) Parasitology , vol.126 , Issue.PART 4 , pp. 293-302
    • MacIntyre, E.A.1    Earnhart, C.G.2    Kaattari, S.L.3
  • 48
    • 0345714969 scopus 로고    scopus 로고
    • Protease activity in the plasma of American oysters, Crassostrea virginica, experimentally infected with the protozoan parasite Perkinsus marinus
    • Munoz P, Vance K, Gomez-Chiarri M. Protease activity in the plasma of American oysters, Crassostrea virginica, experimentally infected with the protozoan parasite Perkinsus marinus. J Parasitol 2003, 89(5):941-951.
    • (2003) J Parasitol , vol.89 , Issue.5 , pp. 941-951
    • Munoz, P.1    Vance, K.2    Gomez-Chiarri, M.3
  • 49
    • 0036792828 scopus 로고    scopus 로고
    • Protease inhibitors and haemagglutinins associated with resistance to the protozoan parasite, Perkinsus marinus, in the Pacific oyster, Crassostrea gigas
    • Romestand B, Corbier F, Roch P. Protease inhibitors and haemagglutinins associated with resistance to the protozoan parasite, Perkinsus marinus, in the Pacific oyster, Crassostrea gigas. Parasitology 2002, 125(Pt 4):323-329.
    • (2002) Parasitology , vol.125 , Issue.PART 4 , pp. 323-329
    • Romestand, B.1    Corbier, F.2    Roch, P.3
  • 51
    • 45549106156 scopus 로고    scopus 로고
    • An oxygen molecular sensor, the HIF prolyl 4-hydroxylase, in the marine protist Perkinsus olseni
    • Leite RB, Brito AB, Cancela ML. An oxygen molecular sensor, the HIF prolyl 4-hydroxylase, in the marine protist Perkinsus olseni. Protist 2008, 159(3):355-368.
    • (2008) Protist , vol.159 , Issue.3 , pp. 355-368
    • Leite, R.B.1    Brito, A.B.2    Cancela, M.L.3
  • 52
    • 80755136720 scopus 로고    scopus 로고
    • Differentially displayed genes with oxygen depletion stress and transcriptional responses in the marine mussel, Mytilus galloprovincialis
    • Woo S, Jeon H-Y, Kim S-R, Yum S. Differentially displayed genes with oxygen depletion stress and transcriptional responses in the marine mussel, Mytilus galloprovincialis. Comp Biochem Physiol Part D Genomics Proteomics 2011, 6(4):348-356.
    • (2011) Comp Biochem Physiol Part D Genomics Proteomics , vol.6 , Issue.4 , pp. 348-356
    • Woo, S.1    Jeon, H.-Y.2    Kim, S.-R.3    Yum, S.4
  • 53
    • 74649084799 scopus 로고    scopus 로고
    • Calcineurin mediates the immune response of hemocytes through NF-κB signaling pathway in pearl oyster (Pinctada fucata)
    • Li C, Liang J, Ma Z, Hu Y, Yan Z, Li Q, Fang Z, Wang H, Zhang G, Xie L, et al. Calcineurin mediates the immune response of hemocytes through NF-κB signaling pathway in pearl oyster (Pinctada fucata). Fish &Shellfish Immunology 2010, 28(2):253-260.
    • (2010) Fish &Shellfish Immunology , vol.28 , Issue.2 , pp. 253-260
    • Li, C.1    Liang, J.2    Ma, Z.3    Hu, Y.4    Yan, Z.5    Li, Q.6    Fang, Z.7    Wang, H.8    Zhang, G.9    Xie, L.10
  • 54
    • 4143143353 scopus 로고    scopus 로고
    • Discovery of genes expressed in response to Perkinsus marinus challenge in Eastern (Crassostrea virginica) and Pacific (C. gigas) oysters
    • Tanguy A, Guo X, Ford SE. Discovery of genes expressed in response to Perkinsus marinus challenge in Eastern (Crassostrea virginica) and Pacific (C. gigas) oysters. Gene 2004, 338(1):121-131.
    • (2004) Gene , vol.338 , Issue.1 , pp. 121-131
    • Tanguy, A.1    Guo, X.2    Ford, S.E.3
  • 55
    • 77957753494 scopus 로고    scopus 로고
    • Microarray analysis of gene expression in eastern oyster (Crassostrea virginica) reveals a novel combination of antimicrobial and oxidative stress host responses after dermo (Perkinsus marinus) challenge
    • Wang S, Peatman E, Liu H, Bushek D, Ford SE, Kucuktas H, Quilang J, Li P, Wallace R, Wang Y, et al. Microarray analysis of gene expression in eastern oyster (Crassostrea virginica) reveals a novel combination of antimicrobial and oxidative stress host responses after dermo (Perkinsus marinus) challenge. Fish & Shellfish Immunology 2010, 29(6):921-929.
    • (2010) Fish & Shellfish Immunology , vol.29 , Issue.6 , pp. 921-929
    • Wang, S.1    Peatman, E.2    Liu, H.3    Bushek, D.4    Ford, S.E.5    Kucuktas, H.6    Quilang, J.7    Li, P.8    Wallace, R.9    Wang, Y.10
  • 57
    • 34047099676 scopus 로고    scopus 로고
    • Identification and expression of gene transcripts generated during an anti-parasitic response in Biomphalaria glabrata
    • Guillou F, Mitta G, Galinier R, Coustau C. Identification and expression of gene transcripts generated during an anti-parasitic response in Biomphalaria glabrata. Dev Comp Immunol 2007, 31(7):657-671.
    • (2007) Dev Comp Immunol , vol.31 , Issue.7 , pp. 657-671
    • Guillou, F.1    Mitta, G.2    Galinier, R.3    Coustau, C.4
  • 58
    • 84862780712 scopus 로고    scopus 로고
    • Identification of differentially expressed genes in Oncomelania hupensis chronically infected with Schistosoma japonicum
    • Wang H, Zhao QP, Nie P, Jiang MS, Song J. Identification of differentially expressed genes in Oncomelania hupensis chronically infected with Schistosoma japonicum. Exp Parasitol 2012, 130(4):374-383.
    • (2012) Exp Parasitol , vol.130 , Issue.4 , pp. 374-383
    • Wang, H.1    Zhao, Q.P.2    Nie, P.3    Jiang, M.S.4    Song, J.5
  • 59
    • 84860389463 scopus 로고    scopus 로고
    • Gene expression analysis of clams Ruditapes philippinarum and Ruditapes decussatus following bacterial infection yields molecular insights into pathogen resistance and immunity
    • Moreira R, Balseiro P, Romero A, Dios S, Posada D, Novoa B, Figueras A. Gene expression analysis of clams Ruditapes philippinarum and Ruditapes decussatus following bacterial infection yields molecular insights into pathogen resistance and immunity. Dev Comp Immunol 2012, 36(1):140-149.
    • (2012) Dev Comp Immunol , vol.36 , Issue.1 , pp. 140-149
    • Moreira, R.1    Balseiro, P.2    Romero, A.3    Dios, S.4    Posada, D.5    Novoa, B.6    Figueras, A.7
  • 60
    • 1642422727 scopus 로고    scopus 로고
    • Insights into the anti-microbial defense of marine invertebrates: the penaeid shrimps and the oyster Crassostrea gigas
    • Bachère E, Gueguen Y, Gonzalez M, de Lorgeril J, Garnier J, Romestand B. Insights into the anti-microbial defense of marine invertebrates: the penaeid shrimps and the oyster Crassostrea gigas. Immunol Rev 2004, 198(1):149-168.
    • (2004) Immunol Rev , vol.198 , Issue.1 , pp. 149-168
    • Bachère, E.1    Gueguen, Y.2    Gonzalez, M.3    de Lorgeril, J.4    Garnier, J.5    Romestand, B.6
  • 61
    • 0022977506 scopus 로고
    • Specificity and the role of lysosomal hydrolases in molluscan inflammation
    • Cheng TC. Specificity and the role of lysosomal hydrolases in molluscan inflammation. Int J Tissue React 1986, 8(6):439-445.
    • (1986) Int J Tissue React , vol.8 , Issue.6 , pp. 439-445
    • Cheng, T.C.1
  • 62
    • 33746283951 scopus 로고    scopus 로고
    • Analysis of EST and lectin expressions in hemocytes of Manila clams (Ruditapes philippinarum) (Bivalvia: Mollusca) infected with Perkinsus olseni
    • Kang Y-S, Kim Y-M, Park K-I, Kim Cho S, Choi K-S, Cho M. Analysis of EST and lectin expressions in hemocytes of Manila clams (Ruditapes philippinarum) (Bivalvia: Mollusca) infected with Perkinsus olseni. Dev Comp Immunol 2006, 30(12):1119-1131.
    • (2006) Dev Comp Immunol , vol.30 , Issue.12 , pp. 1119-1131
    • Kang, Y.-S.1    Kim, Y.-M.2    Park, K.-I.3    Kim Cho, S.4    Choi, K.-S.5    Cho, M.6
  • 63
    • 37549048659 scopus 로고    scopus 로고
    • Increasing genomic information in bivalves through new EST collections in four species: Development of new genetic markers for environmental studies and genome evolution
    • Tanguy A, Bierne N, Saavedra C, Pina B, Bachère E, Kube M, Bazin E, Bonhomme F, Boudry P, Boulo V, et al. Increasing genomic information in bivalves through new EST collections in four species: Development of new genetic markers for environmental studies and genome evolution. Gene 2008, 408(1-2):27-36.
    • (2008) Gene , vol.408 , Issue.1-2 , pp. 27-36
    • Tanguy, A.1    Bierne, N.2    Saavedra, C.3    Pina, B.4    Bachère, E.5    Kube, M.6    Bazin, E.7    Bonhomme, F.8    Boudry, P.9    Boulo, V.10
  • 64
    • 54849419068 scopus 로고    scopus 로고
    • Characterization, tissue expression, and immunohistochemical localization of MCL3, a C-type lectin produced by Perkinsus olseni-infected Manila clams (Ruditapes philippinarum)
    • Kim JY, Adhya M, Cho SK, Choi KS, Cho M. Characterization, tissue expression, and immunohistochemical localization of MCL3, a C-type lectin produced by Perkinsus olseni-infected Manila clams (Ruditapes philippinarum). Fish Shellfish Immunol 2008, 25(5):598-603.
    • (2008) Fish Shellfish Immunol , vol.25 , Issue.5 , pp. 598-603
    • Kim, J.Y.1    Adhya, M.2    Cho, S.K.3    Choi, K.S.4    Cho, M.5
  • 65
    • 4744359093 scopus 로고    scopus 로고
    • Structural and functional diversity of lectin repertoires in invertebrates, protochordates and ectothermic vertebrates
    • Vasta GR, Ahmed H, Odom EW. Structural and functional diversity of lectin repertoires in invertebrates, protochordates and ectothermic vertebrates. Curr Opin Struct Biol 2004, 14(5):617-630.
    • (2004) Curr Opin Struct Biol , vol.14 , Issue.5 , pp. 617-630
    • Vasta, G.R.1    Ahmed, H.2    Odom, E.W.3
  • 66
    • 36749079907 scopus 로고    scopus 로고
    • Identification and tissue expression analysis of C-type lectin and galectin in the Pacific oyster, Crassostrea gigas
    • Yamaura K, Takahashi KG, Suzuki T. Identification and tissue expression analysis of C-type lectin and galectin in the Pacific oyster, Crassostrea gigas. Comp Biochem Physiol B Biochem Mol Biol 2008, 149(1):168-175.
    • (2008) Comp Biochem Physiol B Biochem Mol Biol , vol.149 , Issue.1 , pp. 168-175
    • Yamaura, K.1    Takahashi, K.G.2    Suzuki, T.3
  • 68
    • 0033947551 scopus 로고    scopus 로고
    • C1q: Structure, function, and receptors
    • Kishore U, Reid KBM. C1q: Structure, function, and receptors. Immunopharmacology 2000, 49(1-2):159-170.
    • (2000) Immunopharmacology , vol.49 , Issue.1-2 , pp. 159-170
    • Kishore, U.1    Reid, K.B.M.2
  • 70
    • 1642545529 scopus 로고    scopus 로고
    • Invertebrate immune systems - not homogeneous, not simple, not well understood
    • Loker ES, Adema CM, Zhang S-M, Kepler TB. Invertebrate immune systems - not homogeneous, not simple, not well understood. Immunol Rev 2004, 198(1):10-24.
    • (2004) Immunol Rev , vol.198 , Issue.1 , pp. 10-24
    • Loker, E.S.1    Adema, C.M.2    Zhang, S.-M.3    Kepler, T.B.4
  • 71
    • 35548934271 scopus 로고    scopus 로고
    • A Galectin of Unique Domain Organization from Hemocytes of the Eastern Oyster (Crassostrea virginica) Is a Receptor for the Protistan Parasite Perkinsus marinus
    • Tasumi S, Vasta GR. A Galectin of Unique Domain Organization from Hemocytes of the Eastern Oyster (Crassostrea virginica) Is a Receptor for the Protistan Parasite Perkinsus marinus. J Immunol 2007, 179(5):3086-3098.
    • (2007) J Immunol , vol.179 , Issue.5 , pp. 3086-3098
    • Tasumi, S.1    Vasta, G.R.2
  • 72
    • 1842844345 scopus 로고    scopus 로고
    • Purification and characterisation of a lectin isolated from the Manila clam Ruditapes philippinarum in Korea
    • Bulgakov AA, Park K-I, Choi K-S, Lim H-K, Cho M. Purification and characterisation of a lectin isolated from the Manila clam Ruditapes philippinarum in Korea. Fish & Shellfish Immunology 2004, 16(4):487-499.
    • (2004) Fish & Shellfish Immunology , vol.16 , Issue.4 , pp. 487-499
    • Bulgakov, A.A.1    Park, K.-I.2    Choi, K.-S.3    Lim, H.-K.4    Cho, M.5
  • 73
    • 59349110435 scopus 로고    scopus 로고
    • Differentially expressed genes of the carpet shell clam Ruditapes decussatus against Perkinsus olseni
    • Prado-Alvarez M, Gestal C, Novoa B, Figueras A. Differentially expressed genes of the carpet shell clam Ruditapes decussatus against Perkinsus olseni. Fish Shellfish Immunol 2009, 26(1):72-83.
    • (2009) Fish Shellfish Immunol , vol.26 , Issue.1 , pp. 72-83
    • Prado-Alvarez, M.1    Gestal, C.2    Novoa, B.3    Figueras, A.4
  • 74
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
    • Chomczynski P, Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 1987, 162(1):156-159.
    • (1987) Anal Biochem , vol.162 , Issue.1 , pp. 156-159
    • Chomczynski, P.1    Sacchi, N.2
  • 76
    • 3042615882 scopus 로고    scopus 로고
    • Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs
    • Chevreux B, Pfisterer T, Drescher B, Driesel AJ, Müller WEG, Wetter T, Suhai S. Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs. Genome Res 2004, 14(6):1147-1159.
    • (2004) Genome Res , vol.14 , Issue.6 , pp. 1147-1159
    • Chevreux, B.1    Pfisterer, T.2    Drescher, B.3    Driesel, A.J.4    Müller, W.E.G.5    Wetter, T.6    Suhai, S.7
  • 77
    • 69349085843 scopus 로고    scopus 로고
    • Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase
    • Fleury E, Huvet A, Lelong C, de Lorgeril J, Boulo V, Gueguen Y, Bachere E, Tanguy A, Moraga D, Fabioux C, et al. Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase. BMC Genomics 2009, 10(1):341.
    • (2009) BMC Genomics , vol.10 , Issue.1 , pp. 341
    • Fleury, E.1    Huvet, A.2    Lelong, C.3    de Lorgeril, J.4    Boulo, V.5    Gueguen, Y.6    Bachere, E.7    Tanguy, A.8    Moraga, D.9    Fabioux, C.10
  • 78
    • 77957675520 scopus 로고    scopus 로고
    • High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus
    • Bettencourt R, Pinheiro M, Egas C, Gomes P, Afonso M, Shank T, Santos R. High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus. BMC Genomics 2010, 11(1):559.
    • (2010) BMC Genomics , vol.11 , Issue.1 , pp. 559
    • Bettencourt, R.1    Pinheiro, M.2    Egas, C.3    Gomes, P.4    Afonso, M.5    Shank, T.6    Santos, R.7
  • 79
    • 84859824039 scopus 로고    scopus 로고
    • Transcriptomics of In Vitro Immune-Stimulated Hemocytes from the Manila Clam Ruditapes philippinarum Using High-Throughput Sequencing
    • Moreira R, Balseiro P, Planas JV, Fuste B, Beltran S, Novoa B, Figueras A. Transcriptomics of In Vitro Immune-Stimulated Hemocytes from the Manila Clam Ruditapes philippinarum Using High-Throughput Sequencing. PLoS ONE 2012, 7(4):e35009.
    • (2012) PLoS ONE , vol.7 , Issue.4
    • Moreira, R.1    Balseiro, P.2    Planas, J.V.3    Fuste, B.4    Beltran, S.5    Novoa, B.6    Figueras, A.7
  • 80
    • 84887988411 scopus 로고    scopus 로고
    • Lottia gigantean sequencing project
    • Lottia gigantean sequencing project. [http://genome.jgi-psf.org/Lotgi1/Lotgi1.home.html].
  • 81
    • 84888007406 scopus 로고    scopus 로고
    • Information System of AGENAE program
    • Inra
    • Inra Information System of AGENAE program. 2012, Inra.
    • (2012)
  • 82
    • 84888004388 scopus 로고    scopus 로고
    • Argopecten irradians EST database
    • database S
    • database S Argopecten irradians EST database. 2012, database S.
    • (2012)
  • 83
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21(18):3674-3676.
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    García-Gómez, J.M.3    Terol, J.4    Talón, M.5    Robles, M.6
  • 85
    • 67650721347 scopus 로고    scopus 로고
    • CateGOrizer: A Web-Based Program to Batch Analyze Gene Ontology Classification Categories
    • Hu Z, Jie B, Reecy J. CateGOrizer: A Web-Based Program to Batch Analyze Gene Ontology Classification Categories. Online Journal of Bioinform 2008, 9:108-112.
    • (2008) Online Journal of Bioinform , vol.9 , pp. 108-112
    • Hu, Z.1    Jie, B.2    Reecy, J.3
  • 86
    • 84888009935 scopus 로고    scopus 로고
    • Agilent eArray interface
    • Agilent eArray interface. [http://www.chem.agilent.com/].
  • 88
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang DW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protocols 2008, 4(1):44-57.
    • (2008) Nat Protocols , vol.4 , Issue.1 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 89
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • Huang DW, Sherman BT, Lempicki RA. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 2009, 37(1):1-13.
    • (2009) Nucleic Acids Res , vol.37 , Issue.1 , pp. 1-13
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 90
    • 0034623005 scopus 로고    scopus 로고
    • T-coffee: a novel method for fast and accurate multiple sequence alignment
    • Notredame C, Higgins DG, Heringa J. T-coffee: a novel method for fast and accurate multiple sequence alignment. J Mol Biol 2000, 302(1):205-217.
    • (2000) J Mol Biol , vol.302 , Issue.1 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 91
    • 0029159799 scopus 로고
    • Finding flexible patterns in unaligned protein sequences
    • Jonassen I, Collins JF, Higgins DG. Finding flexible patterns in unaligned protein sequences. Protein Sci 1995, 4(8):1587-1595.
    • (1995) Protein Sci , vol.4 , Issue.8 , pp. 1587-1595
    • Jonassen, I.1    Collins, J.F.2    Higgins, D.G.3
  • 93
    • 0035798406 scopus 로고    scopus 로고
    • Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
    • Gough J, Karplus K, Hughey R, Chothia C. Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. J Mol Biol 2001, 313(4):903-919.
    • (2001) J Mol Biol , vol.313 , Issue.4 , pp. 903-919
    • Gough, J.1    Karplus, K.2    Hughey, R.3    Chothia, C.4
  • 94
    • 80053345905 scopus 로고    scopus 로고
    • SignalP 4.0: discriminating signal peptides from transmembrane regions
    • Petersen TN, Brunak S, von Heijne G, Nielsen H. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Meth 2011, 8(10):785-786.
    • (2011) Nat Meth , vol.8 , Issue.10 , pp. 785-786
    • Petersen, T.N.1    Brunak, S.2    von Heijne, G.3    Nielsen, H.4
  • 95
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl MW. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 2001, 29(9):e45.
    • (2001) Nucleic Acids Res , vol.29 , Issue.9
    • Pfaffl, M.W.1
  • 96
    • 77957969737 scopus 로고    scopus 로고
    • Changes in bioturbation of iron biogeochemistry and in molecular response of the clam Ruditapes decussates upon Perkinsus olseni infection
    • Simao MF, Leite RB, Rocha C, Cancela ML. Changes in bioturbation of iron biogeochemistry and in molecular response of the clam Ruditapes decussates upon Perkinsus olseni infection. Arch Environ Contam Toxicol 2010, 59(3):433-443.
    • (2010) Arch Environ Contam Toxicol , vol.59 , Issue.3 , pp. 433-443
    • Simao, M.F.1    Leite, R.B.2    Rocha, C.3    Cancela, M.L.4


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