-
1
-
-
49649116149
-
FlyBase : A database for the Drosophila research community
-
Drysdale, R. (2008) FlyBase : A database for the Drosophila research community. Methods Mol. Biol., 420, 45-59.
-
(2008)
Methods Mol. Biol.
, vol.420
, pp. 45-59
-
-
Drysdale, R.1
-
2
-
-
75549084124
-
WormBase: A comprehensive resource for nematode research
-
Harris, T. W., Antoshechkin, I., Bieri, T. et al. (2010) WormBase: A comprehensive resource for nematode research. Nucleic Acids Res., 38, D463-D467.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Harris, T.W.1
Antoshechkin, I.2
Bieri, T.3
-
3
-
-
84875075091
-
The Saccharomyces Genome Database provides comprehensive information about the biology of S-cerevisiae and tools for studies in comparative genomics
-
Hirschman, J. E., Engel, S., Hong, E. et al. (2007) The Saccharomyces Genome Database provides comprehensive information about the biology of S-cerevisiae and tools for studies in comparative genomics. FASEB J., 21, A264-A264.
-
(2007)
FASEB J.
, vol.21
-
-
Hirschman, J.E.1
Engel, S.2
Hong, E.3
-
4
-
-
38549093645
-
GDR (Genome Database for Rosaceae): Integrated web-database for Rosaceae genomics and genetics data
-
DOI 10.1093/nar/gkm803
-
Jung, S., Staton, M., Lee, T. et al. (2008) GDR (Genome Database for Rosaceae): Integrated web-database for Rosaceae genomics and genetics data. Nucleic Acids Res., 36, D1034-D1040. (Pubitemid 351149864)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Jung, S.1
Staton, M.2
Lee, T.3
Blenda, A.4
Svancara, R.5
Abbott, A.6
Main, D.7
-
5
-
-
13244295469
-
GDR (Genome Database for Rosaceae): Integrated web resources for Rosaceae genomics and genetics research
-
Jung, S., Jesudurai, C., Staton, M. et al. (2004) GDR (Genome Database for Rosaceae): Integrated web resources for Rosaceae genomics and genetics research. BMC Bioinformatics, 5, 130.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 130
-
-
Jung, S.1
Jesudurai, C.2
Staton, M.3
-
6
-
-
25444486993
-
Marine genomics: A clearing-house for genomic and transcriptomic data of marine organisms
-
McKillen, D. J., Chen, Y. A., Chen, C. et al. (2005) Marine genomics: A clearing-house for genomic and transcriptomic data of marine organisms. BMC Genomics, 6, 34.
-
(2005)
BMC Genomics
, vol.6
, pp. 34
-
-
McKillen, D.J.1
Chen, Y.A.2
Chen, C.3
-
7
-
-
79952201997
-
Gramene database: A hub for comparative plant genomics
-
Jaiswal, P. (2011) Gramene database: A hub for comparative plant genomics. Methods Mol. Biol., 678, 247-275.
-
(2011)
Methods Mol. Biol.
, vol.678
, pp. 247-275
-
-
Jaiswal, P.1
-
8
-
-
0348062817
-
MaizeGDB, the community database for maize genetics and genomics
-
Lawrence, C. J., Dong, Q., Polacco, M. L. et al. (2004) MaizeGDB, the community database for maize genetics and genomics. Nucleic Acids Res., 32, D393-D397. (Pubitemid 38081683)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISS.
-
-
Lawrence, C.J.1
Dong, Q.2
Polacco, M.L.3
Seigfried, T.E.4
Brendel, V.5
-
9
-
-
69249223097
-
MaizeGDB: The maize model organism database for basic, translational, and applied research
-
Lawrence, C. J., Harper, L. C., Schaeffer, M. L. et al. (2008) MaizeGDB: The maize model organism database for basic, translational, and applied research. Int. J. Plant Genomics, 2008, 496957.
-
(2008)
Int. J. Plant Genomics
, vol.2008
, pp. 496957
-
-
Lawrence, C.J.1
Harper, L.C.2
Schaeffer, M.L.3
-
10
-
-
77955048913
-
TreeGenes: A forest tree genome database
-
Wegrzyn, J. L., Lee, J. M., Tearse, B. R. et al. (2008) TreeGenes: A forest tree genome database. Int. J. Plant Genomics, 2008, 412875.
-
(2008)
Int. J. Plant Genomics
, vol.2008
, pp. 412875
-
-
Wegrzyn, J.L.1
Lee, J.M.2
Tearse, B.R.3
-
11
-
-
78651327629
-
The Sol Genomics Network (solgenomics.net): Growing tomatoes using Perl
-
Bombarely, A., Menda, N., Tecle, I. Y. et al. (2011) The Sol Genomics Network (solgenomics.net): Growing tomatoes using Perl. Nucleic Acids Res., 39, D1149-D1155.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Bombarely, A.1
Menda, N.2
Tecle, I.Y.3
-
12
-
-
34547844136
-
A Chado case study: An ontology-based modular schema for representing genome-associated biological information
-
DOI 10.1093/bioinformatics/btm189
-
Mungall, C. J. and Emmert, D. B. (2007) A Chado case study: An ontology-based modular schema for representing genomeassociated biological information. Bioinformatics, 23, i337-i346. (Pubitemid 47244418)
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Mungall, C.J.1
Emmert, D.B.2
Gelbart, W.M.3
De Grey, A.4
Letovsky, S.5
Lewis, S.E.6
Rubin, G.M.7
Shu, S.Q.8
Wiel, C.9
Zhang, P.10
Zhou, P.11
-
13
-
-
43749114275
-
Using Chado to store genome annotation data
-
Chapter 9, Unit 9.6
-
Zhou, P., Emmert, D. and Zhang, P. (2006) Using Chado to store genome annotation data. Curr. Protoc. Bioinformatics, Chapter 9, Unit 9.6.
-
(2006)
Curr. Protoc. Bioinformatics
-
-
Zhou, P.1
Emmert, D.2
Zhang, P.3
-
14
-
-
43349098495
-
Using the generic genome browser (GBrowse)
-
Chapter 9, Unit 9.9
-
Donlin, M. J. (2007) Using the Generic Genome Browser (GBrowse). Curr. Protoc. Bioinformatics, Chapter 9, Unit 9.9.
-
(2007)
Curr. Protoc. Bioinformatics
-
-
Donlin, M.J.1
-
15
-
-
18644378331
-
The generic genome browser: A building block for a model organism system database
-
DOI 10.1101/gr.403602
-
Stein, L. D., Mungall, C., Shu, S. Q. et al. (2002) The Generic Genome Browser: A building block for a model organism system database. Genome Res., 12, 1599-1610. (Pubitemid 35175099)
-
(2002)
Genome Research
, vol.12
, Issue.10
, pp. 1599-1610
-
-
Stein, L.D.1
Mungall, C.2
Shu, S.3
Caudy, M.4
Mangone, M.5
Day, A.6
Nickerson, E.7
Stajich, J.E.8
Harris, T.W.9
Arva, A.10
Lewis, S.11
-
16
-
-
0012306021
-
Apollo: A sequence annotation editor
-
RESEARCH0082
-
Lewis, S. E., Searle, S. M., Harris, N. et al. (2002) Apollo: A sequence annotation editor. Genome Biol., 3, RESEARCH0082.
-
(2002)
Genome Biol.
, vol.3
-
-
Lewis, S.E.1
Searle, S.M.2
Harris, N.3
-
17
-
-
77954199176
-
Ergatis: A web interface and scalable software system for bioinformatics workflows
-
Orvis, J., Crabtree, J., Galens, K. et al. (2010) Ergatis: A web interface and scalable software system for bioinformatics workflows. Bioinformatics, 26, 1488-1492.
-
(2010)
Bioinformatics
, vol.26
, pp. 1488-1492
-
-
Orvis, J.1
Crabtree, J.2
Galens, K.3
-
18
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
DOI 10.1093/nar/gkm882
-
Kanehisa, M., Araki, M., Goto, S. et al. (2008) KEGG for linking genomes to life and the environment. Nucleic Acids Res., 36, D480-D484. (Pubitemid 351149770)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
Yamanishi, Y.11
-
19
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul, S. F., Madden, T. L., Schaffer, A. A. et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
20
-
-
0035166973
-
The InterPro database, an integrated documentation resource for protein families, domains and functional sites
-
Apweiler, R., Attwood, T. K., Bairoch, A. et al. (2001) The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res., 29, 37-40. (Pubitemid 32054401)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.1
, pp. 37-40
-
-
Apweiler, R.1
Attwood, T.K.2
Bairoch, A.3
Bateman, A.4
Birney, E.5
Biswas, M.6
Bucher, P.7
Cerutti, L.8
Corpet, F.9
Croning, M.D.R.10
Durbin, R.11
Falquet, L.12
Fleischmann, W.13
Gouzy, J.14
Hermjakob, H.15
Hulo, N.16
Jonassen, I.17
Kahn, D.18
Kanapin, A.19
Karavidopoulou, Y.20
Lopez, R.21
Marx, B.22
Mulder, N.J.23
Oinn, T.M.24
Pagni, M.25
Servant, F.26
Sigrist, C.J.A.27
Zdobnov, E.M.28
more..
-
21
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
DOI 10.1038/75556
-
Ashburner, M., Ball, C. A., Blake, J. A. et al. (2000) Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29. (Pubitemid 30257031)
-
(2000)
Nature Genetics
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
22
-
-
47349118385
-
GMODWeb: A web framework for the Generic Model Organism Database
-
O'Connor, B. D., Day, A., Cain, S. et al. (2008) GMODWeb: A web framework for the Generic Model Organism Database. Genome Biol., 9, R102.
-
(2008)
Genome Biol.
, vol.9
-
-
O'Connor, B.D.1
Day, A.2
Cain, S.3
-
23
-
-
18644368714
-
The Bioperl toolkit: Perl modules for the life sciences
-
DOI 10.1101/gr.361602
-
Stajich, J. E., Block, D., Boulez, K. et al. (2002) The Bioperl toolkit: Perl modules for the life sciences. Genome Res., 12, 1611-1618. (Pubitemid 35175100)
-
(2002)
Genome Research
, vol.12
, Issue.10
, pp. 1611-1618
-
-
Stajich, J.E.1
Block, D.2
Boulez, K.3
Brenner, S.E.4
Chervitz, S.A.5
Dagdigian, C.6
Fuellen, G.7
Gilbert, J.G.R.8
Korf, I.9
Lapp, H.10
Lehvaslaiho, H.11
Matsalla, C.12
Mungall, C.J.13
Osborne, B.I.14
Pocock, M.R.15
Schattner, P.16
Senger, M.17
Stein, L.D.18
Stupka, E.19
Wilkinson, M.D.20
Birney, E.21
more..
-
24
-
-
40549105825
-
An introduction to BioPerl
-
Plant Bioinformatics - Methods and Protocols
-
Stajich, J. E. (2007) An introduction to BioPerl. Methods Mol. Biol., 406, 535-548. (Pubitemid 351367191)
-
(2007)
Methods in Molecular Biology
, vol.406
, pp. 535-548
-
-
Stajich, J.E.1
-
25
-
-
78651465411
-
The GMOD Drupal bioinformatic server framework
-
Papanicolaou, A. and Heckel, D. G. (2010) The GMOD Drupal bioinformatic server framework. Bioinformatics, 26, 3119-3124.
-
(2010)
Bioinformatics
, vol.26
, pp. 3119-3124
-
-
Papanicolaou, A.1
Heckel, D.G.2
-
26
-
-
14244258507
-
Distributed computing in practice: The Condor experience
-
Thain, D., Tannenbaum, T. and Livny, M. (2005) Distributed computing in practice: The Condor experience. Concurr. Comput. Pract. Exp. Grid Perform., 17, 232-356.
-
(2005)
Concurr. Comput. Pract. Exp. Grid Perform.
, vol.17
, pp. 232-356
-
-
Thain, D.1
Tannenbaum, T.2
Livny, M.3
-
27
-
-
10244255212
-
Taverna: A tool for the composition and enactment of bioinformatics workflows
-
DOI 10.1093/bioinformatics/bth361
-
Oinn, T., Addis, M., Ferris, J. et al. (2004) Taverna: A tool for the composition and enactment of bioinformatics workflows. Bioinformatics, 20, 3045-3054. (Pubitemid 39619196)
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 3045-3054
-
-
Oinn, T.1
Addis, M.2
Ferris, J.3
Marvin, D.4
Senger, M.5
Greenwood, M.6
Carver, T.7
Glover, K.8
Pocock, M.R.9
Wipat, A.10
Li, P.11
-
28
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Goecks, J., Nekrutenko, A. and Taylor, J. (2010) Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol., 11, R86.
-
(2010)
Genome Biol.
, vol.11
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
29
-
-
0034800374
-
InterProScan - An integration platform for the signature-recognition methods in InterPro
-
Zdobnov, E. M. and Apweiler, R. (2001) InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics, 17, 847-848. (Pubitemid 32970486)
-
(2001)
Bioinformatics
, vol.17
, Issue.9
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
30
-
-
34547588704
-
KAAS: An automatic genome annotation and pathway reconstruction server
-
Moriya, Y., Itoh, M., Okuda, S. et al. (2007) KAAS: An automatic genome annotation and pathway reconstruction server. Nucleic Acids Res., 35, W182-W185.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Moriya, Y.1
Itoh, M.2
Okuda, S.3
-
31
-
-
24644503098
-
Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
-
DOI 10.1093/bioinformatics/bti610
-
Conesa, A., Gotz, S., Garcia-Gomez, J. M. et al. (2005) Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics, 21, 3674-3676. (Pubitemid 41264107)
-
(2005)
Bioinformatics
, vol.21
, Issue.18
, pp. 3674-3676
-
-
Conesa, A.1
Gotz, S.2
Garcia-Gomez, J.M.3
Terol, J.4
Talon, M.5
Robles, M.6
-
32
-
-
75949096070
-
Using the generic genome browser (GBrowse)
-
Chapter 9, Unit 9.9
-
Donlin, M. J. (2009) Using the Generic Genome Browser (GBrowse). Curr. Protoc. Bioinformatics, Chapter 9, Unit 9.9.
-
(2009)
Curr. Protoc. Bioinformatics
-
-
Donlin, M.J.1
-
33
-
-
43949138227
-
Blast2GO: A comprehensive suite for functional analysis in plant genomics
-
Conesa, A. and Gotz, S. (2008) Blast2GO: A comprehensive suite for functional analysis in plant genomics. Int. J. Plant Genomics, 2008, 619832.
-
(2008)
Int. J. Plant Genomics
, vol.2008
, pp. 619832
-
-
Conesa, A.1
Gotz, S.2
-
34
-
-
69749083447
-
JBrowse: A nextgeneration genome browser
-
Skinner, M. E., Uzilov, A. V., Stein, L. D. et al. (2009) JBrowse: A nextgeneration genome browser. Genome Res., 19, 1630-1638.
-
(2009)
Genome Res.
, vol.19
, pp. 1630-1638
-
-
Skinner, M.E.1
Uzilov, A.V.2
Stein, L.D.3
|