-
1
-
-
0034922258
-
Resonance assignment and structure determination for RNA
-
Cromsigt, J., van Buuren, B., Schleucher, J. and Wijmenga, S. (2001) Resonance assignment and structure determination for RNA. Methods Enzymol., 338, 371-399.
-
(2001)
Methods Enzymol
, vol.338
, pp. 371-399
-
-
Cromsigt, J.1
Van Buuren, B.2
Schleucher, J.3
Wijmenga, S.4
-
2
-
-
0000353016
-
The use of NMR methods for conformational studies of nucleic acids
-
Wijmenga, S.S. and van Buuren, B.N.M. (1998) The use of NMR methods for conformational studies of nucleic acids. Prog. Nucl. Magn. Reson. Spectrosc., 32, 287-387.
-
(1998)
Prog. Nucl. Magn. Reson. Spectrosc
, vol.32
, pp. 287-387
-
-
Wijmenga, S.S.1
Van Buuren, B.N.M.2
-
3
-
-
0030156432
-
NMR investigation of RNA structure
-
Varani, G., Aboulela, F. and Allain, F.H.T. (1996) NMR investigation of RNA structure. Prog. Nucl. Magn. Reson. Spectrosc., 29, 51-127.
-
(1996)
Prog. Nucl. Magn. Reson. Spectrosc
, vol.29
, pp. 51-127
-
-
Varani, G.1
Aboulela, F.2
Allain, F.H.T.3
-
4
-
-
17144452674
-
NMR spectroscopy of RNA
-
Furtig, B., Richter, C., Wo? hnert, J. and Schwalbe, H. (2003) NMR spectroscopy of RNA. ChemBioChem, 4, 936-962.
-
(2003)
ChemBioChem
, vol.4
, pp. 936-962
-
-
Furtig, B.1
Richter, C.2
Wo Hnert, J.3
Schwalbe, H.4
-
5
-
-
0034786589
-
Prediction of proton chemical shifts in RNA. Their use in structure refinement and validation
-
Cromsigt, J.A.M.T.C., Hilbers, C.W. and Wijmenga, S.S. (2001) Prediction of proton chemical shifts in RNA. Their use in structure refinement and validation. J. Biomol. NMR, 21, 11-29.
-
(2001)
J. Biomol. NMR
, vol.21
, pp. 11-29
-
-
Cromsigt, J.A.M.T.C.1
Hilbers, C.W.2
Wijmenga, S.S.3
-
6
-
-
84873058309
-
Database proton NMR chemical shifts for RNA signal assignment and validation
-
Barton, S., Heng, X., Johnson, B.A. and Summers, M.F. (2012) Database proton NMR chemical shifts for RNA signal assignment and validation. J. Biomol. NMR, 55, 33-46.
-
(2012)
J. Biomol. NMR
, vol.55
, pp. 33-46
-
-
Barton, S.1
Heng, X.2
Johnson, B.A.3
Summers, M.F.4
-
7
-
-
54049099506
-
Conformational signatures of 13C chemical shifts in RNA ribose
-
Ohlenschla? ger, O., Haumann, S., Ramachandran, R. and Go? rlach, M. (2008) Conformational signatures of 13C chemical shifts in RNA ribose. J. Biomol. NMR, 42, 139-142.
-
(2008)
J. Biomol. NMR
, vol.42
, pp. 139-142
-
-
Ohlenschla Ger, O.1
Haumann, S.2
Ramachandran, R.3
Go Rlach, M.4
-
8
-
-
84861559026
-
A procedure to validate and correct the 13C chemical shift calibration of RNA datasets
-
Aeschbacher, T., Schubert, M. and Allain, F.H.T. (2012) A procedure to validate and correct the 13C chemical shift calibration of RNA datasets. J. Biomol. NMR, 52, 179-190.
-
(2012)
J. Biomol. NMR
, vol.52
, pp. 179-190
-
-
Aeschbacher, T.1
Schubert, M.2
Allain, F.H.T.3
-
9
-
-
37549037516
-
13C-detection in RNA bases: Revealing structure-chemical shift relationships
-
Fares, C., Amata, I. and Carlomagno, T. (2007) 13C-detection in RNA bases: revealing structure-chemical shift relationships. Journal of the American Chemical Society, 129, 15814-15823.
-
(2007)
Journal of the American Chemical Society
, vol.129
, pp. 15814-15823
-
-
Fares, C.1
Amata, I.2
Carlomagno, T.3
-
10
-
-
84866434876
-
Chemical shifts in nucleic acids studied by density functional theory calculations and comparison with experiment
-
Fonville, J.M., Swart, M., Voka´ cˇova´, Z., Sychrovsky´, V., Sˇponer, J.E., Sˇ poner, J., Hilbers, C.W., Bickelhaupt, F.M. and Wijmenga, S.S. (2012) Chemical shifts in nucleic acids studied by density functional theory calculations and comparison with experiment. Chemistry, 18, 12372–12387.
-
(2012)
Chemistry
, vol.18
, pp. 12372-12387
-
-
Fonville, J.M.1
Swart, M.2
Vokáčová, Z.3
Sychrovský, V.4
Šponer, J.E.5
Šponer, J.6
Hilbers, C.W.7
Bickelhaupt, F.M.8
Wijmenga, S.S.9
-
11
-
-
79960125660
-
Advances in automated NMR protein structure determination
-
Guerry, P. and Herrmann, T. (2011) Advances in automated NMR protein structure determination. Q. Rev. Biophys., 44, 257-309.
-
(2011)
Q. Rev. Biophys
, vol.44
, pp. 257-309
-
-
Guerry, P.1
Herrmann, T.2
-
12
-
-
58849162221
-
Automated structure determination from NMR spectra
-
Gu? ntert, P. (2009) Automated structure determination from NMR spectra. Eur. Biophys. J., 38, 129-143.
-
(2009)
Eur. Biophys. J
, vol.38
, pp. 129-143
-
-
Gu Ntert, P.1
-
13
-
-
0000441606
-
GARANT - A general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra
-
Bartels, C., Gu? ntert, P., Billeter, M. and Wu? thrich, K. (1997) GARANT - A general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra. J. Comput. Chem., 18, 139-149.
-
(1997)
J. Comput. Chem
, vol.18
, pp. 139-149
-
-
Bartels, C.1
Gu Ntert, P.2
Billeter, M.3
Wu Thrich, K.4
-
14
-
-
0031580198
-
Automated analysis of protein NMR assignments using methods from artificial intelligence
-
Zimmerman, D.E., Kulikowski, C.A., Huang, Y.P., Feng, W.Q., Tashiro, M., Shimotakahara, S., Chien, C.Y., Powers, R. and Montelione, G.T. (1997) Automated analysis of protein NMR assignments using methods from artificial intelligence. J. Mol. Biol., 269, 592-610.
-
(1997)
J. Mol. Biol
, vol.269
, pp. 592-610
-
-
Zimmerman, D.E.1
Kulikowski, C.A.2
Huang, Y.P.3
Feng, W.Q.4
Tashiro, M.5
Shimotakahara, S.6
Chien, C.Y.7
Powers, R.8
Montelione, G.T.9
-
15
-
-
4644234334
-
Mars - Robust automatic backbone assignment of proteins
-
Jung, Y.S. and Zweckstetter, M. (2004) Mars - robust automatic backbone assignment of proteins. J. Biomol. NMR, 30, 11-23.
-
(2004)
J. Biomol. NMR
, vol.30
, pp. 11-23
-
-
Jung, Y.S.1
Zweckstetter, M.2
-
16
-
-
63549111769
-
Probabilistic interaction network of evidence algorithm and its application to complete labeling of peak lists from protein NMR spectroscopy
-
Bahrami, A., Assadi, A.H., Markley, J.L. and Eghbalnia, H.R. (2009) Probabilistic interaction network of evidence algorithm and its application to complete labeling of peak lists from protein NMR spectroscopy. PLoS Comp. Biol., 5, e1000307.
-
(2009)
PLoS Comp. Biol
, vol.5
-
-
Bahrami, A.1
Assadi, A.H.2
Markley, J.L.3
Eghbalnia, H.R.4
-
17
-
-
84864484147
-
A new algorithm for reliable and general NMR resonance assignment
-
Schmidt, E. and Gu? ntert, P. (2012) A new algorithm for reliable and general NMR resonance assignment. J. Am. Chem. Soc., 134, 12817-12829.
-
(2012)
J. Am. Chem. Soc
, vol.134
, pp. 12817-12829
-
-
Schmidt, E.1
Gu Ntert, P.2
-
18
-
-
84863113026
-
RNA-PAIRS: RNA probabilistic assignment of imino resonance shifts
-
Bahrami, A., Clos, L.J., Markley, J.L., Butcher, S.E. and Eghbalnia, H.R. (2012) RNA-PAIRS: RNA probabilistic assignment of imino resonance shifts. J. Biomol. NMR, 52, 289-302.
-
(2012)
J. Biomol. NMR
, vol.52
, pp. 289-302
-
-
Bahrami, A.1
Clos, L.J.2
Markley, J.L.3
Butcher, S.E.4
Eghbalnia, H.R.5
-
20
-
-
0030735061
-
Uncertainty ellipses and their application to interval estimation of emitter position
-
Paradowski, L.R. (1997) Uncertainty ellipses and their application to interval estimation of emitter position. IEEE Transactions on Aerospace and Electronic Systems, 33, 126-133.
-
(1997)
IEEE Transactions on Aerospace and Electronic Systems
, vol.33
, pp. 126-133
-
-
Paradowski, L.R.1
-
21
-
-
0030735061
-
Uncertainty ellipses and their application to interval estimation of emitter position
-
Paradowski, L.R. (1997) Uncertainty ellipses and their application to interval estimation of emitter position. IEEE Transactions on Aerospace and Electronic Systems, 33, 126-133.
-
(1997)
IEEE Transactions on Aerospace and Electronic Systems
, vol.33
, pp. 126-133
-
-
Paradowski, L.R.1
-
22
-
-
0031576336
-
Torsion angle dynamics for NMR structure calculation with the new program DYANA
-
Gu? ntert, P., Mumenthaler, C. and Wu? thrich, K. (1997) Torsion angle dynamics for NMR structure calculation with the new program DYANA. J. Mol. Biol., 273, 283-298.
-
(1997)
J. Mol. Biol
, vol.273
, pp. 283-298
-
-
Gu Ntert, P.1
Mumenthale, C.2
Wu Thrich, K.3
-
23
-
-
0031576336
-
Torsion angle dynamics for NMR structure calculation with the new program DYANA
-
Gu? ntert, P., Mumenthaler, C. and Wu? thrich, K. (1997) Torsion angle dynamics for NMR structure calculation with the new program DYANA. J. Mol. Biol., 273, 283-298.
-
(1997)
J. Mol. Biol
, vol.273
, pp. 283-298
-
-
Gu Ntert, P.1
Mumenthale, C.2
Wu Thrich, K.3
-
24
-
-
0343459675
-
The program XEASY for computer-supported NMR spectral analysis of biological macromolecules
-
Bartels, C., Xia, T.H., Billeter, M., Gu? ntert, P. and Wu? thrich, K. (1995) The program XEASY for computer-supported NMR spectral analysis of biological macromolecules. J. Biomol. NMR, 6, 1-10.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 1-10
-
-
Bartels, C.1
Xia, T.H.2
Billeter, M.3
Gu Ntert, P.4
Wu Thrich, K.5
-
25
-
-
48449095385
-
The Vienna RNA websuite
-
Gruber, A.R., Lorenz, R., Bernhart, S.H., Neubock, R. and Hofacker, I.L. (2008) The Vienna RNA websuite. Nucleic Acids Res., 36, W70-W74.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Gruber, A.R.1
Lorenz, R.2
Bernhart, S.H.3
Neubock, R.4
Hofacker, I.L.5
-
26
-
-
0000714031
-
Automated sequence-specific NMR assignment of homologous proteins using the program GARANT
-
Bartels, C., Billeter, M., Gu? ntert, P. and Wu? thrich, K. (1996) Automated sequence-specific NMR assignment of homologous proteins using the program GARANT. J. Biomol. NMR, 7, 207-213.
-
(1996)
J. Biomol. NMR
, vol.7
, pp. 207-213
-
-
Bartels, C.1
Billeter, M.2
Gu Ntert, P.3
Wu Thrich, K.4
-
27
-
-
0000714031
-
Automated sequence-specific NMR assignment of homologous proteins using the program GARANT
-
Bartels, C., Billeter, M., Gu? ntert, P. and Wu? thrich, K. (1996) Automated sequence-specific NMR assignment of homologous proteins using the program GARANT. J. Biomol. NMR, 7, 207-213.
-
(1996)
J. Biomol. NMR
, vol.7
, pp. 207-213
-
-
Bartels, C.1
Billeter, M.2
Gu Ntert, P.3
Wu Thrich, K.4
-
28
-
-
58149475991
-
Automated assignment of NMR chemical shifts using peak-particle dynamics simulation with the DYNASSIGN algorithm
-
Schmucki, R., Yokoyama, S. and Gu? ntert, P. (2009) Automated assignment of NMR chemical shifts using peak-particle dynamics simulation with the DYNASSIGN algorithm. J. Biomol. NMR, 43, 97-109.
-
(2009)
J. Biomol. NMR
, vol.43
, pp. 97-109
-
-
Schmucki, R.1
Yokoyama, S.2
Gu Ntert, P.3
-
29
-
-
38549138986
-
-
Ulrich, E.L., Akutsu, H., Doreleijers, J.F., Harano, Y., Ioannidis, Y.E., Lin, J., Livny, M., Mading, S., Maziuk, D., Miller, Z. et al. (2008) BioMagResBank. Nucleic Acids Res., 36, D402-D408.
-
(2008)
Bio Mag Res Bank Nucleic Acids Res
, vol.36
-
-
Ulrich, E.L.1
Akutsu, H.2
Doreleijers, J.F.3
Harano, Y.4
Ioannidis, Y.E.5
Lin, J.6
Livny, M.7
Mading, S.8
Maziuk, D.9
Miller, Z.10
-
30
-
-
80054114304
-
NMR detection of structures in the HIV-1 50-leader RNA that regulate genome packaging
-
Lu, K., Heng, X., Garyu, L., Monti, S., Garcia, E.L., Kharytonchyk, S., Dorjsuren, B., Kulandaivel, G., Jones, S., Hiremath, A. et al. (2011) NMR detection of structures in the HIV-1 50-leader RNA that regulate genome packaging. Science, 334, 242-245.
-
(2011)
Science
, vol.334
, pp. 242-245
-
-
Lu, K.1
Heng, X.2
Garyu, L.3
Monti, S.4
Garcia, E.L.5
Kharytonchyk, S.6
Dorjsuren, B.7
Kulandaivel, G.8
Jones, S.9
Hiremath, A.10
-
31
-
-
3242677639
-
SiRNAs: Applications in functional genomics and potential as therapeutics
-
Dorsett, Y. and Tuschl, T. (2004) siRNAs: Applications in functional genomics and potential as therapeutics. Nat. Rev. Drug Discov., 3, 318-329.
-
(2004)
Nat. Rev. Drug Discov
, vol.3
, pp. 318-329
-
-
Dorsett, Y.1
Tuschl, T.2
-
32
-
-
0036308102
-
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA
-
Herrmann, T., Gu? ntert, P. and Wu? thrich, K. (2002) Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J. Mol. Biol., 319, 209-227.
-
(2002)
J. Mol. Biol
, vol.319
, pp. 209-227
-
-
Herrmann, T.1
Gu Ntert, P.2
Wu Thrich, K.3
-
33
-
-
33749524593
-
Automated protein structure determination from NMR spectra
-
Ló pez-Méndez, B. and Gu? ntert, P. (2006) Automated protein structure determination from NMR spectra. J. Am. Chem. Soc., 128, 13112-13122.
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 13112-13122
-
-
López-Méndez, B.1
Gu Ntert, P.2
-
34
-
-
0031114540
-
Assignment methodology for larger RNA oligonucleotides: Application to an ATP-binding RNA aptamer
-
Dieckmann, T. and Feigon, J. (1997) Assignment methodology for larger RNA oligonucleotides: Application to an ATP-binding RNA aptamer. J. Biomol. NMR, 9, 259-272.
-
(1997)
J. Biomol. NMR
, vol.9
, pp. 259-272
-
-
Dieckmann, T.1
Feigon, J.2
-
35
-
-
1242340502
-
New applications of 2D filtered/edited NOESY for assignment and structure elucidation of RNA and RNA-protein complexes
-
Peterson, R.D., Theimer, C.A., Wu, H. and Feigon, J. (2004) New applications of 2D filtered/edited NOESY for assignment and structure elucidation of RNA and RNA-protein complexes. J. Biomol. NMR, 28, 59-67.
-
(2004)
J. Biomol. NMR
, vol.28
, pp. 59-67
-
-
Peterson, R.D.1
Theimer, C.A.2
Wu, H.3
Feigon, J.4
-
36
-
-
79251622683
-
Structure determination and dynamics of protein-RNA complexes by NMR spectroscopy
-
Dominguez, C., Schubert, M., Duss, O., Ravindranathan, S. and Allain, F.H. (2011) Structure determination and dynamics of protein-RNA complexes by NMR spectroscopy. Prog. Nucl. Magn. Reson. Spectrosc., 58, 1-61.
-
(2011)
Prog. Nucl. Magn. Reson. Spectrosc
, vol.58
, pp. 1-61
-
-
Dominguez, C.1
Schubert, M.2
Duss, O.3
Ravindranathan, S.4
Allain, F.H.5
-
37
-
-
1442286437
-
NMR structure of the 101-nucleotide core encapsidation signal of the Moloney murine leukemia virus
-
D'souza, V., Dey, A., Habib, D. and Summers, M.F. (2004) NMR structure of the 101-nucleotide core encapsidation signal of the Moloney murine leukemia virus. J. Mol. Biol., 337, 427-442.
-
(2004)
J. Mol. Biol
, vol.337
, pp. 427-442
-
-
Dsouza, V.1
Dey, A.2
Habib, D.3
Summers, M.F.4
-
38
-
-
0029836175
-
Preparation of specifically deuterated RNA for NMR studies using a combination of chemical and enzymatic synthesis
-
Tolbert, T.J. and Williamson, J.R. (1996) Preparation of specifically deuterated RNA for NMR studies using a combination of chemical and enzymatic synthesis. J. Am. Chem. Soc., 118, 7929-7940.
-
(1996)
J. Am. Chem. Soc
, vol.118
, pp. 7929-7940
-
-
Tolbert, T.J.1
Williamson, J.R.2
-
39
-
-
0031576691
-
Preparation of specifically deuterated and C-13-labeled RNA for NMR studies using enzymatic synthesis
-
Tolbert, T.J. and Williamson, J.R. (1997) Preparation of specifically deuterated and C-13-labeled RNA for NMR studies using enzymatic synthesis. J. Am. Chem. Soc., 119, 12100-12108.
-
(1997)
J. Am. Chem. Soc
, vol.119
, pp. 12100-12108
-
-
Tolbert, T.J.1
Williamson, J.R.2
-
40
-
-
0033625703
-
Preparation of specifically 2H- and 13C-labeled ribonucleotides
-
Scott, L.G., Tolbert, T.J. and Williamson, J.R. (2000) Preparation of specifically 2H- and 13C-labeled ribonucleotides. Methods Enzymol., 317, 18-38.
-
(2000)
Methods Enzymol
, vol.317
, pp. 18-38
-
-
Scott, L.G.1
Tolbert, T.J.2
Williamson, J.R.3
-
41
-
-
84870474718
-
Isotope labeling and segmental labeling of larger RNAs for NMR structural studies
-
Duss, O., Lukavsky, P.J. and Allain, F.H. (2012) Isotope labeling and segmental labeling of larger RNAs for NMR structural studies. Adv. Exp. Med. Biol., 992, 121-144.
-
(2012)
Adv. Exp. Med. Biol
, vol.992
, pp. 121-144
-
-
Duss, O.1
Lukavsky, P.J.2
Allain, F.H.3
-
42
-
-
78651286184
-
A fast, efficient and sequence-independent method for flexible multiple segmental isotope labeling of RNA using ribozyme and RNase H cleavage
-
Duss, O., Maris, C., von Schroetter, C. and Allain, F.H.T. (2010) A fast, efficient and sequence-independent method for flexible multiple segmental isotope labeling of RNA using ribozyme and RNase H cleavage. Nucleic Acids Res., 38, e188
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Duss, O.1
Maris, C.2
Von Schroetter, C.3
Allain, F.H.T.4
|