메뉴 건너뛰기




Volumn 7, Issue , 2013, Pages 307-325

On crowd-verification of biological networks

Author keywords

Biological Expression Language; Biological network models; Community curation; Reputation system

Indexed keywords

ARTICLE; BIOLOGICAL NETWORK; CHRONIC OBSTRUCTIVE LUNG DISEASE; COMPUTER INTERFACE; GENE EXPRESSION; GOLD STANDARD; INFORMATION PROCESSING; INTERNET; LUNG DISEASE; PATHOPHYSIOLOGY; PEER REVIEW; PHENOTYPE; SKILL; TRANSCRIPTOMICS; VALIDATION PROCESS;

EID: 84885901309     PISSN: None     EISSN: 11779322     Source Type: Journal    
DOI: 10.4137/BBI.S12932     Document Type: Article
Times cited : (30)

References (41)
  • 3
    • 84855206623 scopus 로고    scopus 로고
    • Games with a scientifc purpose
    • Good BM, Su AI. Games with a scientifc purpose. Genome Biology. 2011; 12(12):135.
    • (2011) Genome Biology , vol.12 , Issue.12 , pp. 135
    • Good, B.M.1    Su, A.I.2
  • 5
    • 80052730617 scopus 로고    scopus 로고
    • Verifcation of systems biology research in the age of collaborative competition
    • Sep
    • Meyer P, Alexopoulos LG, Bonk T, et al. Verifcation of systems biology research in the age of collaborative competition. Nat Biotechnol. Sep 2011;29(9):811-815.
    • (2011) Nat Biotechnol , vol.29 , Issue.9 , pp. 811-815
    • Meyer, P.1    Alexopoulos, L.G.2    Bonk, T.3
  • 6
    • 84860475570 scopus 로고    scopus 로고
    • Industrial methodology for process veri-fcation in research (IMPROVER): Toward systems biology verifcation
    • Meyer P, Hoeng J, Rice JJ, et al. Industrial methodology for process veri-fcation in research (IMPROVER): toward systems biology verifcation. Bioinformatics. 2012;28(9):1193-201.
    • (2012) Bioinformatics , vol.28 , Issue.9 , pp. 1193-1201
    • Meyer, P.1    Hoeng, J.2    Rice, J.J.3
  • 7
    • 84885895107 scopus 로고    scopus 로고
    • Strengths and limitations of microarray-based phenotype prediction: Lessons learned from the IMPROVER Diagnostic Signature Challenge
    • Aug 20
    • Tarca AL, Lauria M, Unger M, et al. Strengths and limitations of microarray-based phenotype prediction: Lessons learned from the IMPROVER Diagnostic Signature Challenge. Bioinformatics. Aug 20, 2013.
    • (2013) Bioinformatics
    • Tarca, A.L.1    Lauria, M.2    Unger, M.3
  • 8
    • 84995046262 scopus 로고
    • A large-scale experiment to assess protein structure prediction methods
    • Nov
    • Moult J, Pedersen JT, Judson R, Fidelis K. A large-scale experiment to assess protein structure prediction methods. Proteins. Nov 1995;23(3):II-V.
    • (1995) Proteins , vol.23 , Issue.3
    • Moult, J.1    Pedersen, J.T.2    Judson, R.3    Fidelis, K.4
  • 9
    • 0038359614 scopus 로고    scopus 로고
    • CAPRI: A Critical Assessment of PRedicted Interactions. Proteins
    • Janin J, Henrick K, Moult J, et al. CAPRI: A Critical Assessment of PRedicted Interactions. Proteins. Jul 1, 2003;52(1):2-9.
    • (2003) Jul 1 , vol.52 , Issue.1 , pp. 2-9
    • Janin, J.1    Henrick, K.2    Moult, J.3
  • 10
    • 33947304181 scopus 로고    scopus 로고
    • Overview of BioCre-AtIvE: Critical assessment of information extraction for biology
    • Hirschman L, Yeh A, Blaschke C, Valencia A. Overview of BioCre-AtIvE: critical assessment of information extraction for biology. BMC bioinformatics. 2005;6 Suppl 1:S1.
    • (2005) BMC Bioinformatics , vol.6 , Issue.SUPPL. 1
    • Hirschman, L.1    Yeh, A.2    Blaschke, C.3    Valencia, A.4
  • 11
    • 36249019789 scopus 로고    scopus 로고
    • Dialogue on reverse-engineering assessment and methods: The DREAM of high-throughput pathway inference
    • Dec
    • Stolovitzky G, Monroe D, Califano A. Dialogue on reverse-engineering assessment and methods: the DREAM of high-throughput pathway inference. Annals of the New York Academy of Sciences. Dec 2007;1115:1-22.
    • (2007) Annals of the New York Academy of Sciences , vol.1115 , pp. 1-22
    • Stolovitzky, G.1    Monroe, D.2    Califano, A.3
  • 12
    • 84874921123 scopus 로고    scopus 로고
    • Construction of a computable network model for DNA damage, autophagy, cell death, and senescence
    • Gebel S, Lichtner RB, Frushour B, et al. Construction of a computable network model for DNA damage, autophagy, cell death, and senescence. Bioinformatics and biology insights. 2013;7:97-117.
    • (2013) Bioinformatics and Biology Insights , vol.7 , pp. 97-117
    • Gebel, S.1    Lichtner, R.B.2    Frushour, B.3
  • 13
    • 84879307956 scopus 로고    scopus 로고
    • A modular cell-type focused infammatory process network model for non-diseased pulmonary tissue
    • Westra JW, Schlage WK, Hengstermann A, et al. A modular cell-type focused infammatory process network model for non-diseased pulmonary tissue. Bioinformatics and Biology Insights. 2013;7:1-26.
    • (2013) Bioinformatics and Biology Insights , vol.7 , pp. 1-26
    • Westra, J.W.1    Schlage, W.K.2    Hengstermann, A.3
  • 14
    • 84880807708 scopus 로고    scopus 로고
    • Construction of a computable network model of tissue repair and angiogenesis in the lung
    • Park JS, Schlage WK, Frushour BP, et al. Construction of a computable network model of tissue repair and angiogenesis in the lung. Clinical Toxicology. 2013:S12.
    • (2013) Clinical Toxicology
    • Park, J.S.1    Schlage, W.K.2    Frushour, B.P.3
  • 15
    • 80054106639 scopus 로고    scopus 로고
    • A computable cellular stress network model for non-diseased pulmonary and cardiovascular tissue
    • Schlage WK, Westra JW, Gebel S, et al. A computable cellular stress network model for non-diseased pulmonary and cardiovascular tissue. BMC Syst Biol. 2011;5:168.
    • (2011) BMC Syst Biol , vol.5 , pp. 168
    • Schlage, W.K.1    Westra, J.W.2    Gebel, S.3
  • 18
    • 84860698978 scopus 로고    scopus 로고
    • A network-based approach to quantifying the impact of biologically active substances
    • May
    • Hoeng J, Deehan R, Pratt D, et al. A network-based approach to quantifying the impact of biologically active substances. Drug Discov Today. May 2012;17(9-10):413-8.
    • (2012) Drug Discov Today , vol.17 , Issue.9-10 , pp. 413-418
    • Hoeng, J.1    Deehan, R.2    Pratt, D.3
  • 19
    • 84885941885 scopus 로고    scopus 로고
    • Micropublications: A semantic model for claims, evidence, arguments and annotations in biomedical communications
    • Clark T, Ciccarese PN, Goble CA. Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications. arXiv preprint arXiv:1305.3506. 2013.
    • (2013) ArXiv Preprint ArXiv:1305.3506
    • Clark, T.1    Ciccarese, P.N.2    Goble, C.A.3
  • 20
    • 84867901084 scopus 로고    scopus 로고
    • Jointly creating digital abstracts: Dealing with synonymy and polysemy
    • Vercruysse S, Kuiper M. Jointly creating digital abstracts: dealing with synonymy and polysemy. BMC Research Notes. 2012;5(1):601.
    • (2012) BMC Research Notes , vol.5 , Issue.1 , pp. 601
    • Vercruysse, S.1    Kuiper, M.2
  • 21
    • 77956664073 scopus 로고    scopus 로고
    • The BioPAX community standard for pathway data sharing
    • Sep
    • Demir E, Cary MP, Paley S, et al. The BioPAX community standard for pathway data sharing. Nat Biotechnol. Sep 2010;28(9):935-942.
    • (2010) Nat Biotechnol , vol.28 , Issue.9 , pp. 935-942
    • Demir, E.1    Cary, M.P.2    Paley, S.3
  • 22
    • 79959759890 scopus 로고    scopus 로고
    • Construction of a computable cell proliferation network focused on non-diseased lung cells
    • Westra JW, Schlage WK, Frushour BP, et al. Construction of a computable cell proliferation network focused on non-diseased lung cells. BMC Syst Biol. 2011;5:105.
    • (2011) BMC Syst Biol , vol.5 , pp. 105
    • Westra, J.W.1    Schlage, W.K.2    Frushour, B.P.3
  • 24
    • 84861643512 scopus 로고    scopus 로고
    • Assessment of network perturbation amplitude by applying high-throughput data to causal biological networks
    • Martin F, Thomson TM, Sewer A, et al. Assessment of network perturbation amplitude by applying high-throughput data to causal biological networks. BMC Syst Biol. May 31, 2012;6(1):54.
    • (2012) BMC Syst Biol , vol.6 , Issue.1 , pp. 54
    • Martin, F.1    Thomson, T.M.2    Sewer, A.3
  • 25
    • 84880838585 scopus 로고    scopus 로고
    • Systematic Verifcation of Upstream Regulators of a Computable Cellular Proliferation Network Model on Non-Diseased Lung Cells Using a Dedicated Dataset
    • Belcastro V, Poussin C, Gebel S, Mathis C, Schlage WK, Lichtner RB, et al. Systematic Verifcation of Upstream Regulators of a Computable Cellular Proliferation Network Model on Non-Diseased Lung Cells Using a Dedicated Dataset. Bioinformatics and Biology Insights. 2013;7:217.
    • (2013) Bioinformatics and Biology Insights , vol.7 , pp. 217
    • Belcastro, V.1    Poussin, C.2    Gebel, S.3    Mathis, C.4    Schlage, W.K.5    Lichtner, R.B.6
  • 26
  • 27
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the uni-fcation of biology. The Gene Ontology Consortium
    • May
    • Ashburner M, Ball CA, Blake JA, et al. Gene ontology: tool for the uni-fcation of biology. The Gene Ontology Consortium. Nature Genetics. May 2000;25(1):25-29.
    • (2000) Nature Genetics , vol.25 , Issue.1 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3
  • 30
    • 84876515907 scopus 로고    scopus 로고
    • STRING v9.1: Protein-protein interaction networks, with increased coverage and integration
    • Jan, (Database issue)
    • Franceschini A, Szklarczyk D, Frankild S, et al. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Research. Jan 2013;41(Database issue):D808-d815.
    • (2013) Nucleic Acids Research , vol.41
    • Franceschini, A.1    Szklarczyk, D.2    Frankild, S.3
  • 31
  • 32
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular data sets
    • Jan, (Database issue)
    • Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M. KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Research. Jan 2012;40(Database issue):D109-D114.
    • (2012) Nucleic Acids Research , vol.40
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Furumichi, M.4    Tanabe, M.5
  • 33
    • 0031789272 scopus 로고    scopus 로고
    • The global burden of disease, 1990-2020
    • Nov
    • Lopez AD, Murray CC. The global burden of disease, 1990-2020. Nat Med. Nov 1998;4(11):1241-1243.
    • (1998) Nat Med , vol.4 , Issue.11 , pp. 1241-1243
    • Lopez, A.D.1    Murray, C.C.2
  • 34
    • 0035035768 scopus 로고    scopus 로고
    • Global strategy for the diagnosis, management, and prevention of chronic obstructive pulmonary disease. NHLBI/WHO Global Initiative for Chronic Obstructive Lung Disease (GOLD) Workshop summary
    • Apr
    • Pauwels RA, Buist AS, Calverley PM, Jenkins CR, Hurd SS. Global strategy for the diagnosis, management, and prevention of chronic obstructive pulmonary disease. NHLBI/WHO Global Initiative for Chronic Obstructive Lung Disease (GOLD) Workshop summary. Am J Respir Crit Care Med. Apr 2001;163(5):1256-1276.
    • (2001) Am J Respir Crit Care Med , vol.163 , Issue.5 , pp. 1256-1276
    • Pauwels, R.A.1    Buist, A.S.2    Calverley, P.M.3    Jenkins, C.R.4    Hurd, S.S.5
  • 35
    • 84873185663 scopus 로고    scopus 로고
    • State of the art and open challenges in community-driven knowledge curation
    • Feb
    • Groza T, Tudorache T, Dumontier M. State of the art and open challenges in community-driven knowledge curation. Journal of Biomedical Informatics. Feb 2013;46(1):1-4.
    • (2013) Journal of Biomedical Informatics , vol.46 , Issue.1 , pp. 1-4
    • Groza, T.1    Tudorache, T.2    Dumontier, M.3
  • 36
    • 77955491294 scopus 로고    scopus 로고
    • Predicting protein structures with a multiplayer online game
    • Aug 5
    • Cooper S, Khatib F, Treuille A, et al. Predicting protein structures with a multiplayer online game. Nature. Aug 5, 2010;466(7307):756-760.
    • (2010) Nature , vol.466 , Issue.7307 , pp. 756-760
    • Cooper, S.1    Khatib, F.2    Treuille, A.3
  • 37
    • 84877765675 scopus 로고    scopus 로고
    • Systematic analysis of challenge-driven improvements in molecular prognostic models for breast cancer
    • Apr 17
    • Margolin AA, Bilal E, Huang E, et al. Systematic analysis of challenge-driven improvements in molecular prognostic models for breast cancer. Science Translational Medicine. Apr 17, 2013;5(181):181re181.
    • (2013) Science Translational Medicine , vol.5 , Issue.181
    • Margolin, A.A.1    Bilal, E.2    Huang, E.3
  • 39
    • 84877315835 scopus 로고    scopus 로고
    • A community-driven global reconstruction of human metabolism
    • Mar 3
    • Thiele I, Swainston N, Fleming RM, et al. A community-driven global reconstruction of human metabolism. Nat Biotechnol. Mar 3, 2013.
    • (2013) Nat Biotechnol
    • Thiele, I.1    Swainston, N.2    Fleming, R.M.3
  • 40
    • 84862240827 scopus 로고    scopus 로고
    • Community annotation and bioinfor-matics workforce development in concert-Little Skate Genome Annotation Work shops and Jamborees
    • Wang Q, Arighi CN, King BL, et al. Community annotation and bioinfor-matics workforce development in concert-Little Skate Genome Annotation Workshops and Jamborees. Database: The Journal of Biological Databases and Curation. 2012;2012:bar064.
    • (2012) Database: The Journal of Biological Databases and Curation , vol.2012
    • Wang, Q.1    Arighi, C.N.2    King, B.L.3
  • 41
    • 84870882114 scopus 로고    scopus 로고
    • An omics strategy for discovering pulmonary biomarkers potentially relevant to the evaluation of tobacco products
    • Wang H, Mattes WB, Richter P, Mendrick DL. An omics strategy for discovering pulmonary biomarkers potentially relevant to the evaluation of tobacco products. Biomarkers. 2012;6(6):849-860.
    • (2012) Biomarkers , vol.6 , Issue.6 , pp. 849-860
    • Wang, H.1    Mattes, W.B.2    Richter, P.3    Mendrick, D.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.