-
1
-
-
33750624806
-
NSABP study confirms oncotype DX predicts chemotherapy benefit in breast cancer patients
-
(2006) NSABP study confirms oncotype DX predicts chemotherapy benefit in breast cancer patients. Oncology (Williston Park), 20, 789-790.
-
(2006)
Oncology (Williston Park)
, vol.20
, pp. 789-790
-
-
-
2
-
-
41649092988
-
Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer
-
Acharya, C.R. et al. (2012) Retraction: Acharya CR, et al. Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer. JAMA. 2008; 299:1574-1587.
-
(2012)
JAMA
, vol.299
, pp. 1574-1587
-
-
Acharya, C.R.1
-
3
-
-
84856477159
-
Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer
-
Acharya CR, et al. (2012) Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer. JAMA, 307, 453.
-
(2012)
JAMA.
, vol.307
, pp. 453
-
-
Acharya, C.R.1
-
4
-
-
0033931867
-
Assessing the accuracy of prediction algorithms for classification: An overview
-
Baldi, P. et al. (2000) Assessing the accuracy of prediction algorithms for classification: an overview. Bioinformatics, 16, 412-424.
-
(2000)
Bioinformatics
, vol.16
, pp. 412-424
-
-
Baldi, P.1
-
5
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y. and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Royal Stat. Soc. B, 57, 289-300.
-
(1995)
J. Royal Stat. Soc. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
6
-
-
0034601455
-
Molecular classification of cutaneous malignant melanoma by gene expression profiling
-
Bittner, M. et al. (2000) Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature, 406, 536-540.
-
(2000)
Nature
, vol.406
, pp. 536-540
-
-
Bittner, M.1
-
7
-
-
0036735386
-
Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma
-
Gordon, G.J. et al. (2002) Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma. Cancer Res., 62, 4963-4967.
-
(2002)
Cancer Res.
, vol.62
, pp. 4963-4967
-
-
Gordon, G.J.1
-
8
-
-
84878864979
-
Insurance coverage policies for personalized medicine
-
Hresko, A. and Haga, S.B. (2012) Insurance Coverage Policies for Personalized Medicine. J. Pers. Med., 2, 201-216.
-
(2012)
J. Pers. Med.
, vol.2
, pp. 201-216
-
-
Hresko, A.1
Haga, S.B.2
-
9
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry, R.A. et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics, 4, 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
-
10
-
-
33845502266
-
A genetic signature can predict prognosis and response to therapy in breast cancer: Oncotype DX
-
Kaklamani, V. (2006) A genetic signature can predict prognosis and response to therapy in breast cancer: Oncotype DX. Expert. Rev. Mol. Diagn., 6, 803-809.
-
(2006)
Expert. Rev. Mol. Diagn.
, vol.6
, pp. 803-809
-
-
Kaklamani, V.1
-
11
-
-
4644309388
-
Evaluating psoriasis with Psoriasis Area and Severity Index, Psoriasis Global Assessment, and Lattice System Physician's Global Assessment
-
Langley, R.G. and Ellis, C.N. (2004) Evaluating psoriasis with Psoriasis Area and Severity Index, Psoriasis Global Assessment, and Lattice System Physician's Global Assessment. J. Am. Acad. Dermatol., 51, 563-569.
-
(2004)
J. Am. Acad. Dermatol.
, vol.51
, pp. 563-569
-
-
Langley, R.G.1
Ellis, C.N.2
-
12
-
-
85043216795
-
Rank-based transcriptional signatures: A novel approach to diagnostic biomarker definition and analysis
-
in press
-
Lauria, M. (2013) Rank-based transcriptional signatures: a novel approach to diagnostic biomarker definition and analysis. Syst. Biomed., in press.
-
(2013)
Syst. Biomed.
-
-
Lauria, M.1
-
13
-
-
77955131271
-
A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data
-
Luo, J. et al. (2010) A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data. Pharmacogenomics J., 10, 278-291.
-
(2010)
Pharmacogenomics J.
, vol.10
, pp. 278-291
-
-
Luo, J.1
-
14
-
-
84870305264
-
Wisdom of crowds for robust gene network inference
-
Marbach, D. et al. (2012)Wisdom of crowds for robust gene network inference. Nat. Methods, 9, 796-804.
-
(2012)
Nat. Methods
, vol.9
, pp. 796-804
-
-
Marbach, D.1
-
15
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
Matthews, B.W. (1975) Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim. Biophys. Acta, 405, 442-451.
-
(1975)
Biochim. Biophys. Acta
, vol.405
, pp. 442-451
-
-
Matthews, B.W.1
-
16
-
-
80052730617
-
Verification of systems biology research in the age of collaborative competition
-
Meyer, P. et al. (2011) Verification of systems biology research in the age of collaborative competition. Nat. Biotechnol., 29, 811-815.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 811-815
-
-
Meyer, P.1
-
17
-
-
84860475570
-
Industrial methodology for process verification in research (IMPROVER): Toward systems biology verification
-
Meyer, P. et al. (2012) Industrial methodology for process verification in research (IMPROVER): toward systems biology verification. Bioinformatics, 28, 1193-1201.
-
(2012)
Bioinformatics
, vol.28
, pp. 1193-1201
-
-
Meyer, P.1
-
18
-
-
34249311296
-
Individualization of therapy using MammaPrint: From development to the MINDACT Trial
-
Mook, S. et al. (2007) Individualization of therapy using MammaPrint: from development to the MINDACT Trial. Cancer Genomics Proteomics, 4, 147-155.
-
(2007)
Cancer Genomics Proteomics
, vol.4
, pp. 147-155
-
-
Mook, S.1
-
19
-
-
84890025199
-
Learning diagnostic signatures from microarray data using L1-regularized logistic regression
-
in press
-
Nandy, P. et al. (2013) Learning diagnostic signatures from microarray data using L1-regularized logistic regression. Syst. Biomed., in press.
-
(2013)
Syst. Biomed.
-
-
Nandy, P.1
-
20
-
-
84868135433
-
Comparison of molecular subtyping with BluePrint, MammaPrint, and TargetPrint to local clinical subtyping in breast cancer patients
-
Nguyen, B. et al. (2012) Comparison of molecular subtyping with BluePrint, MammaPrint, and TargetPrint to local clinical subtyping in breast cancer patients. Ann. Surg. Oncol., 19, 3257-3263.
-
(2012)
Ann. Surg. Oncol.
, vol.19
, pp. 3257-3263
-
-
Nguyen, B.1
-
21
-
-
0034680102
-
Molecular portraits of human breast tumours
-
Perou, C.M. et al. (2000)Molecular portraits of human breast tumours. Nature, 406, 747-752.
-
(2000)
Nature
, vol.406
, pp. 747-752
-
-
Perou, C.M.1
-
22
-
-
77949644952
-
Towards a rigorous assessment of systems biology models: The DREAM3 challenges
-
Prill, R.J. et al. (2010) Towards a rigorous assessment of systems biology models: the DREAM3 challenges. PLoS One, 5, e9202.
-
(2010)
PLoS One
, vol.5
-
-
Prill, R.J.1
-
23
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena, M. et al. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270, 467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
-
24
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon, P. et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res., 13, 2498-2504.
-
(2003)
Genome Res.
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
-
25
-
-
78650735473
-
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
-
Shi, L. et al. (2010) The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nat. Biotechnol., 28, 827-838.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 827-838
-
-
Shi, L.1
-
26
-
-
84872256757
-
Machine learning and its applications to biology
-
Tarca, A.L. et al. (2007) Machine learning and its applications to biology. PLoS. Comput. Biol., 3, e116.
-
(2007)
PLoS. Comput. Biol.
, vol.3
-
-
Tarca, A.L.1
-
27
-
-
84890032374
-
Methodological approach from the best overall team in the IMPROVER diagnostic signature challenge
-
in press.
-
Tarca, A.L., Than, N.G. and Romero, R. (2013) Methodological Approach from the Best Overall Team in the IMPROVER Diagnostic Signature Challenge. Syst. Biomed., in press.
-
(2013)
Syst. Biomed.
-
-
Tarca, A.L.1
Than, N.G.2
Romero, R.3
-
28
-
-
85194972808
-
Regression shrinkage and selection via the lasso
-
Tibshirani, R. et al. (1996) Regression shrinkage and selection via the lasso. J. Royal. Statist. Soc B., 58, 267-288.
-
(1996)
J. Royal. Statist. Soc B.
, vol.58
, pp. 267-288
-
-
Tibshirani, R.1
-
29
-
-
34547446199
-
Post-transplant ischemic injury is associated with up-regulated AlloMap gene expression
-
Yamani, M.H. et al. (2007a) Post-transplant ischemic injury is associated with up-regulated AlloMap gene expression. Clin. Transplant., 21, 523-525.
-
(2007)
Clin. Transplant.
, vol.21
, pp. 523-525
-
-
Yamani, M.H.1
-
30
-
-
33947640618
-
Transplant vasculopathy is associated with increased AlloMap gene expression score
-
Yamani, M.H. et al. (2007b) Transplant vasculopathy is associated with increased AlloMap gene expression score. J. Heart Lung Transplant., 26, 403-406.
-
(2007)
J. Heart Lung Transplant.
, vol.26
, pp. 403-406
-
-
Yamani, M.H.1
|