Trichoderma eijii and T. pseudolacteum, two new species from Japan

Mycological Progress

Volumn 12, Issue 4, 2013, Pages 739-753

  Kim, Chang Sun ^a   Shirouzu, Takashi ^a   Nakagiri, Akira ^a   Sotome, Kozue ^a   Maekawa, Nitaro ^a  

^a TOTTORI UNIVERSITY   (Japan)

Author keywords

Ascomycota; Hypocrea; Molecular phylogeny; Morphology

Indexed keywords

ASCOMYCOTA; HYPOCREA; HYPOCREA CITRINA; HYPOCREA FLAVICONIDIA; HYPOCREA LACTEA; HYPOCREA PEZIZOIDES; LENTINULA EDODES; TRICHODERMA;

EID: 84885677076     PISSN: 1617416X     EISSN: 18618952     Source Type: Journal    
DOI: 10.1007/s11557-012-0886-y     Document Type: Article

References (56)

1. Anonymous (2002) Mushroom integrated pest management. Pennsylvania State University, University Park.
2. Bissett J (1991) A revision of the genus Trichoderma. II. Infrageneric classification. Can J Bot 69: 2357-2372.
3. Carbone I, Kohn LM (1999) A method for designing primer sets for speciation studies in filamentous Ascomycetes. Mycologia 91: 553-556.
4. Cha JS (2004) Pest and disease management. In: MushWorld (ed) Mushroom growers' handbook 1. Aloha Medicinals Inc, Haiku, pp 172-174.
5. Chaverri P, Samuels GJ (2003) Hypocrea/Trichoderma (Ascomycota, Hypocreales, Hypocreaceae): species with green ascospores. Stud Mycol 48: 1-116.
6. Chaverri P, Castlebury LA, Overton BE, Samuels GJ (2003) Hypocrea/Trichoderma: species with conidiophore elongations and green conidia. Mycologia 95: 1100-1140.
7. Chun J (1995) Computer-assisted classification and identification of Actinomycetes. Doctoral thesis, University of Newcastle.
8. Cubero OF, Crespo ANA, Fatehi F, Bridge PD (1999) DNA extraction and PCR amplification method suitable for fresh, herbarium-stored, lichenized, and other fungi. Pl Syst Evol 216: 243-249.
9. Degenkolb T, Dieckmann R, Nielsen KF, Gräfenhan T, Theis C, Zafari D, Chaverri P, Ismaiel A, Brückner H, von Döhren H, Thrane U, Petrini O, Samuels GJ (2008) The Trichoderma brevicompactum clade: a separate lineage with new species, new peptaibiotics, and mycotoxins. Mycol Prog 7: 177-219.
10. Dodd SL, Lieckfeldt E, Chaverri P, Overton BE, Samuels GJ (2002) Taxonomy and phylogenetic relationship of two species of Hypocrea with Trichoderma anamorphs. Mycol Prog 1: 409-428.
11. Dodd SL, Lieckfeldt E, Samuels GJ (2003) Hypocrea atroviridis sp. nov., the teleomorph of Trichoderma atroviride. Mycologia 95: 27-40.
12. Doi Y (1966) A revision of hypocreales with cultural observation I. Some Japanese species of hypocrea and podostroma. Bull Nat Sci Mus Tokyo 9: 345-357.
13. Doi Y (1968) Revision of the hypocreales with cultural observations. II. Hypocrea dichromospora, sp. nov. and its Trichoderma state. Bull Nat Mus Tokyo 11: 185-189.
14. Doi Y (1969) Revision of the Hypocreales with cultural observations IV. The genus Hypocrea and its allies in Japan (1). General part. Bull Nat Sci Mus Tokyo 12: 693-724.
15. Doi Y (1972) Revision of the Hypocreales with cultural observations. IV. The genus Hypocrea and its allies in Japan (2). Enumeration of the species. Bull Nat Sci Mus Tokyo 15: 649-751.
16. Doi Y (1974) Hypocrea rufa (Pers. ex Fr.) Fr., Hypomyces aurantius (Pers. per S. F. Gray) Tul., and their allies in Japan. Japanese J Bot 20: 403-412.
17. Doi Y (1979) Revision of the Hypocreales with cultural observations XII. Additional note on Hypocrea peltata (Jungh.) Berk. and its allied species. Bull Nat Sci Mus Tokyo B 5: 37-49.
18. Doi Y (2001) A new species of Hypocrea (Ascomycota, Hypocreales) form Mikurajima Island, Japan. Mem Nat Sci Mus Tokyo 37: 113-118.
19. Doi N, Doi Y (1979) Notes on Trichoderma and its allies 1. A list of teleomorphic species with Trichoderma or its allied anamorphs hitherto known. Bull Natl Sci Mus Ser B (Botany) 5: 117-123.
20. Druzhinina IS, Chaverri P, Fallah P, Kubicek CP, Samuels GJ (2004) Hypocrea flaviconidia, a new species from Costa Rica with yellow conidia. Stud Mycol 50: 401-407.
21. Druzhinina IS, Seidl-Seiboth V, Herrera-Estrella A, Horwitz BA, Kenerley CM, Monte E, Mukherjee PK, Zeilinger S, Grigoriev IV, Kubicek CP (2011) Trichoderma: the genomics of opportunistic success. Nat Rev Microbiol 9: 749-759.
22. Druzhinina IS, Komoń-Zelazowska M, Ismaiel A, Jaklitsch W, Mullaw T, Samuels GJ, Kubicek C (2012) Molecular phylogeny and species delimitation in the section Longibrachiatum of Trichoderma. Fung Genet Biol. doi: 10. 1016/j. fgb. 2012. 02. 004.
23. Fletcher JT (1990) Trichoderma and Penicillium disease of Agaricus bisporus. A literature review for the horticultural development council. ADAS, London.
24. Grogan HM, Gaze RH (1995) Growth of Trichoderma harzianum in traditional and experimental compost. In: Elliot TJ (ed) Mushroom science XIV, vol 2. Balkema, Rotterdam, pp 653-660.
25. Harman GE, Howell CR, Viterbo A, Chet I, Lorito M (2004) Trichoderma species-opportunistic, avirulent plant symbionts. Nat Rev Microbiol 2: 43-56.
26. Hawksworth DL (2012) Managing and coping with names of pleomorphic fungi in a period of transition. IMA Fungus 3: 15-24.
27. Jaklitsch WM (2009) European species of Hypocrea Part I. The green-spored species. Stud Mycol 63: 1-91.
28. Jaklitsch WM (2011) European species of Hypocrea part II: species with hyaline ascospores. Fungal Divers 48: 1-250.
29. Kim CS, Park MS, Kim SC, Maekawa N, Yu SH (2012a) Identification of Trichoderma, a competitor of shiitake mushroom (Lentinula edodes), and competition between Lentinula edodes and Trichoderma species in Korea. Plant Pathol J 28: 137-148.
30. Kim CS, Shirouzu T, Nakagiri A, Sotome K, Nagasawa E, Maekawa N (2012b) Trichoderma mienum sp. nov., isolated from mushroom farms in Japan. Antonie van Leeuwenhoek 102: 629-641.
31. Kim CS, Yu SH, Nakagiri A, Shirouzu T, Sotome K, Kim SC, Maekawa N (2012c) Re-evaluation of Hypocrea pseudogelatinosa and H. pseudostraminea isolated from shiitake mushroom (Lentinula edodes) cultivation in Korea and Japan. Plant Pathol J 28: 341-356.
32. Komatsu M (1976) Studies on Hypocrea, Trichoderma and allied fungi antagonistic to shiitake, Lentinus edodes (Berk.) Sing. (in Japanese). Rep Tottori Mycol Inst 13: 1-113.
33. Kullnig-Gradinger CM, Szakács G, Kubicek CP (2002) Phylogeny and evolution of the genus Trichoderma: a multigene approach. Mycol Res 106: 757-767.
34. Liu P, Doi Y (1995) The Hypocreaceae of China 1. Hypocrea pezizoides with pale green conidia from southern Yunnan, China. Bull Nat Sci Mus Tokyo Ser B 21: 179-188.
35. Liu YJ, Whelen S, Hall BD (1999) Phylogenetic relationships among Ascomycetes: evidence from an RNA polymerase II subunit. Mol Biol Evol 16: 1799-1808.
36. Nirenberg HI (1976) Untersuchungen über die morphologische und biologische Differnzierung in der Fusarium-Sektion Liseola. Mitteilungen aus der Biologischen Bundesanstalt für Land- und Forstwirtschaft Berlin- Dahlem (in German) 169: 1-117.
37. O'Donnell K, Cigelnik E, Nirenberg HI (1998) Molecular systematic and phylogeography of the Gibberella fujikuroi species complex. Mycologia 90: 465-493.
38. Ospina-Giraldo MD, Royse DM, Thon JR, Chen X, Romaine CP (1998) Phylogenetic relationships of Trichoderma harzianum causing mushroom green mold in Europe and North America to other species of Trichoderma from world-wide sources. Mycologia 90: 76-81.
39. Overton BE, Stewart EL, Geiser DM, Jaklitsch WM (2006a) Systematics of Hypocrea citrina and related taxa. Stud Mycol 56: 1-38.
40. Overton BE, Stewart EL, Geiser DM (2006b) Taxonomy and phylogenetic relationships of nine species of Hypocrea with anamorphs assignable to Trichoderma section Hypocreanum. Stud Mycol 56: 39-65.
41. Park MS, Seo GS, Lee KH, Bae KS, Yu SH (2005) Morphological and cultural characteristics of Trichoderma spp. associated with green mold of oyster mushroom in Korea. Plant Pathol J 21: 221-228.
42. Park MS, Bae KS, Yu SH (2006) Two new species of Trichoderma associated with green mold of oyster mushroom cultivation in Korea. Mycobiology 34: 111-113.
43. Posada D (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25: 1253-1256.
44. Rinker DL (1994) Trichoderma green mold: a seminar by Dr. Donald Betterley, Monterey Labs. Mushroom News 42: 28-32.
45. Romaine CP, Royse DJ, Wuest PJ, Beyer DM (1996) Mushroom green mold: cause, edaphic factors and control. Mushroom News 44: 20-23.
46. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
47. Samuels GJ (1996) Trichoderma: a review of biology and systematic of the genus. Mycol Res 100: 923-935.
48. Samuels GJ, Dodd SL, Gams W, Castlebury LA, Petrini O (2002) Trichoderma species associated with the green mold epidemic of commercially grown Agaricus bisporus. Mycologia 94: 146-168.
49. Samuels GJ, Dodd SL, Lu BS, Petrini O, Schroers HJ, Druzhinina IS (2006) The Trichoderma koningii aggregate species. Stud Mycol 56: 67-133.
50. Samuels GJ, Ismaiel A, de Souza J, Chaverri P (2012a) Trichoderma stromaticum and its overseas relatives. Mycol Prog 11: 215-254.
51. Samuels GJ, Ismaiel A, Mulaw TB, Szakacs G, Druzhinina IS, Kubicek CP, Jaklitsch WM (2012b) The Longibrachiatum clade of Trichoderma: a revision with new species. Fungal Divers. doi: 10. 1007/s13225-012-0152-2.
52. Seaby DA (1987) Infection of mushroom compost by Trichoderma species. Mushroom J 179: 355-361.
53. Seaby DA (1989) Further observations on Trichoderma. Mushroom J 197: 147-151.
54. Swofford DL (2002) PAUP. Phylogenetic analysis using parsimony, version 4. 0. Sinauer Associates, Sunderland.
55. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) ClustalX: windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acids Res 25: 4876-4878.
56. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic, San Diego, pp 315-322.