Identification of Trichoderma, a competitor of shiitake mushroom (Lentinula edodes), and competition between Lentinula edodes and trichoderma species in Korea

Plant Pathology Journal

Volumn 28, Issue 2, 2012, Pages 137-148

  Kim, Chang Sun ^a,b   Park, Myung Soo ^c   Kim, Seon Cheol ^d   Maekawa, Nitaro ^b   Yu, Seung Hun ^a  

^a Chungnam National University   (South Korea)

^b TOTTORI UNIVERSITY   (Japan)

^c Korea Research Institute of Chemical Technology   (South Korea)

^d National Forestry Cooperatives Federation   (South Korea)

Author keywords

Competition test; ITS; Phylogenetic analysis; Rpb2; Tef1

Indexed keywords

BASIDIOMYCOTA; LENTINULA EDODES; SOLANUM TUBEROSUM; TRICHODERMA; TRICHODERMA ATROVIRIDE; TRICHODERMA CITRINOVIRIDE; TRICHODERMA LONGIBRACHIATUM;

EID: 84930474872     PISSN: 15982254     EISSN: None     Source Type: Journal    
DOI: 10.5423/PPJ.2012.28.2.137     Document Type: Article

References (52)

1. th Edition. The Korean Society of Plant Pathologly, Seoul. 853 pp.
2. Bissett, J. 1984. A revision of the genus Trichoderma. I. Sect. Longibrachiatum sect. nov. Can. J. Bot. 62:924-931.
3. Bissett, J. 1991a. A revision of the genus Trichoderma. II. Infrageneric classificaition. Can. J. Bot. 69:2357-2372.
4. Bissett, J. 1991b. A revision of the genus Trichoderma. III. Sect. Pachybasium. Can. J. Bot. 69:2373-2417.
5. Bissett, J. 1991c. A revision of the genus Trichoderma. IV. Additional notes on section Longibrachiatum. Can. J. Bot. 69: 2418-2420.
6. Carbone, I. and Kohn, L. M. 1999. A method for designing primer sets for speciation studies in filamentous ascomycetes. Myco-logia 91:553-556.
7. Chaverri, P. and Samuels, G. J. 2003. Hypocrea/Trichoderma (Ascomycota, Hypocreales, Hypocreaceae): species with green ascospores. Stud. Mycol. 48:1-113.
8. Chen, A. W. 2005. Chapter 1: What is shiitake. In: Mushroom Growers' Handbook 2. ed. by MushroomWorld. pp. 1-11. MushroomWorld, Seoul, Korea.
9. Chet, I. 1987. Trichoderma - application, mode of action and potential as a biocontrol agent of soil borne plant pathogenic fungi. In: Innovative Approaches to Plant Disease Control, ed. by I. Chet, pp.137-160. John Wiley and Sons, New York, USA.
10. Chun, J. 1995. Computer-assisted classification and identification of actinomycetes. Ph. D. thesis, University of Newcastle, Newcastle upon Tyne, UK.
11. Claydon, N., Allan, M., Hanso, J. R. and Avent, A. G. 1987. Anti-fungal alkyl pyrones of Trichoderma harzianum. Trans. Br. Mycol. Soc. 88:503-513.
12. Cubero, O. F., Crespo, A. N. A., Fatehi, F. and Bridge, P. D. 1999. DNA extraction and PCR amplification method suitable for fresh, herbarium-stored, lichenized, and other fungi. Pl. Syst. Evol. 216:243-249.
13. Degenkolb, T., Dieckmann, R., Nielsen, K. F., Gräfenhan, T., Theis, C., Zafari, D., Chaverri, P., Ismaiel, A., Brückner, H., Döhren, von H., Thrane, U., Petrini, O. and Samuels, G. J. 2008. The Trichoderma brevicompactum clade: a separate lineage with new species, new peptibiotics, and mycotoxins. Mycol. Progr. 7:177-219.
14. Dennis, C. and Webster, J. 1971a. Antagonistic properties of species groups of Trichoderma. I. Production of nonvolatile antibiotics. Trans. Br. Mycol. Soc. 57:25-39.
15. Dennis, C. and Webster, J. 1971b. Antagonistic properties of species groups of Trichoderma. II. Production of volatile antibiotics. Trans. Br. Mycol. Soc. 57:41-48.
16. Di Pietro, A., Lorito, M., Hayes, C., Broadway, K. and Harman, G. E. 1993. Endochitinase from Gliocladium virens. Isolation, characterization, synergistic antifungal activity in combination with gliotoxin. Phytopathology 83:308-313.
17. Hashioka, Y. 1973. Scanning electronmicroscopy on the myco-parasites, Trichoderma, Gliocladium and Acremonium. Rept. Tottori Mycol. Inst. 10:473-484.
18. Howell, C. R. 1998. The role of antibiosis in biocontrol. In: Tr i -choderma & Gliocladium, vol. 2. ed. by G.E. Harman and C. P. Kubicek, pp 173-184. Taylor & Francis, Padstow.
19. Jaklitsch, W. M. 2009. European species of Hypocrea Part I. The green-spored species. Stud. Mycol. 63:1-91.
20. Jaklitsch, W. M. 2011. European species of Hypocrea part II: species with hyaline ascospores. Fungal Divers. 48:1-250.
21. Jeon, Y.-A., Kim, W.-G., Kim, D.-H., Kwon, S.-W. and Hong, S. B. 2010. Taxonomic position of Korean isolates of Rhizocto-nia solani based on RAPD and ITS sequencing of ribosomal DNA. Plant Pathol. J. 26:83-89.
22. Kim, J. Y., Yun, Y. H., Hyun, M. W., Kim, M. H. and Kim, S. H. 2010. Identification and characterization of Gliocladium viride isolated from mushroom fly infested oak log used for shiitake cultivation. Mycobiology 38:7-12.
23. Kim, J. Y., Kwon, H. W., Tang, L. and Kim, S. H. 2012. Identification and characterization of Trichoderma citrinoviride isolated from mushroom fly-infested oak log beds used for shiitake cultivation. Plant Pathol. J. 28:219.
24. Kullnig-Gradinger, C. M., Szakacx, G. and Kubicek, C. P. 2002. Phylogeny and evolution of the fungal genus Trichoderma - a multigene approach. Mycol. Res. 106:757-767.
25. Lieckfeldt, E. and Seifert, K. A. 2000. An evaluation of the use of ITS sequences in the taxonomy of the Hypocreales. Stud. Mycol. 45:35-44.
26. Liu, Y. J., Whelen, S. and Hall, B. D. 1999. Phylogenetic Relationships Among Ascomycetes: Evidence from an RNA poly-merase II Subunit. Mol. Biol. Evol. 16:1799-1808.
27. Luo, X. C. 2004. Progress of xiang-gu (shiitake) cultivation in China. In: Mushroom Science XVI: Science and Cultivation of Edible and Medicinal Fungi. ed. by Romaine, Keil, Rinker and Royes, pp. 317-322. The Pennsylvania State University Press, USA.
28. Miyazaki, K. and Tsunoda, M. 2003. Application of DNA markers to research on Trichoderma in mushroom facilities of Japan (1): RAPD, SSCP marker. Mushroom Sci. Biotechnol. 11: 65-70.
29. Miyazaki, K., Tsuchiya, Y. and Okuda, T. 2009. Specific PCR assays for the detection of Trichoderma harzianum causing green mold disease during mushroom cultivation. Myco-science 50:94-99.
30. Nirenberg, H. I. 1976. Untersuchungen über die morphologische und biologische Differnzierung in der Fusarium-Sektion Liseola. Mitteilungen aus der Biologischen Bundesanstalt für Land- und Forstwirtschaft Berlin- Dahlem 169:1-117.
31. O'donnell, K., Cigelnik, E. and Nirenberg, H. I. 1998. Molecular systematic and phylogeography of the Gibberella fujikuroi species complex. Mycologia 90:465-493.
32. Overten, B. E., Stewart, E. L. and Geiser, D. M. 2006. Taxonomy and phylogenetic relationships of nine species of Hypocrea with anamorphs assignable to Trichoderma section Hypocre-anum. Stud. Mycol. 56:39-65.
33. Park, M. S., Seo, G. S., Lee, K. H., Bae, K. S. and Yu, S. H. 2005. Morphological and cultural characteristics of Trichoderma spp. associated with green mold of oyster mushroom in Korea. Plant Pathol. J. 21:221-228.
34. Park, M. S., Bae, K. S. and Yu, S. H. 2006. Two new species of Trichoderma associated with green mold of oyster mushroom cultivation in Korea. Mycobiology 34:111-113.
35. Rifai, M. A. 1969. A revision of the genus Trichoderma. Mycol. Pap. 116:1-116.
36. Ronquist, F. and Huelsenbeck, J. P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
37. Samuels, G. J., Petrini, O., Kuhls, K., Lieckfeldt, E. and Kubicek, C. P. 1998. The Hypocrea schweinitzii complex and Tricho-derma sect. Longibrachiatum. Stud. Mycol. 41:1-54.
38. Samuels, G. J., Gams, W., Castlebury, L. A. and Petrini, O. 2002. Trichoderma species associated with the green mold epidemic of commercially grown Agaricus bisporus. Mycologia 94: 146-170.
39. Samuels, G. J. 2006. Trichoderma: Systematics, the sexual state, and ecolgy. Phytopathology 96:195-206.
40. Samuels, G. J., Dodd, S., Lu, B., Petrini, O., Schroers, H. and Druzhinina I. S. 2006. The Trichoderma koningii aggregate species. Stud. Mycol. 56:67-133.
41. Schirmbock, M., Lorito, M., Wang, Y. L., Hayes, C. K., Arisan-Atac, I., Scala, F., Harman, G. E. and Kubicek, C. P. 1994. Parallel formation and synergism of hydrolytic enzymes and pep-taibol antibiotics, molecular mechanisms involved in the antagonistic action of Trichoderma harzianum against phyto-pathogenic fungi. Appl. Environ. Microbiol. 60:4364-4370.
42. Smith, R. J. and Grula, E. A. 1982. Toxic components on the larval surface of the corn earworm (Heliothis zea) and their effects on germination and growth of Beauveria bassiana. J. Invertebr. Pathol. 39:15-22.
43. Stefanova, M., Leiva, A., Larrinaga, L. and Coronado, M. F. 1999. Metabolic activity of Trichoderma spp. isolates for a control of soil-borne phytopathogenic fungi. Revista de la Facultad de Agronomia, Universidad del Zulia 16:509-516.
44. Swofford, D. L. 2003. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0b10. Sunderland, Massachusetts: Sinauer Associates.
45. Taylor, J. W., Jacobson, D. J. and Fisher, M. 1999. The evolution of asexual fungi: speciation and classification. Annu. Rev. Phy-topathol. 37:197-246.
46. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. and Higgins, D. G. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
47. Tokimoto, K. and Komatsu, M. 1975. Effect of carbon and nitrogen sources in media on the hyphal interference between Lentinus edodes and some species of Trichoderma. Ann. Phy-topathol. Soc. Jpn. 45:261-264.
48. Tokimoto, K. 1985. Physiological studies on antagonism between Lentinus edodes and Trichoderma spp. in bedlogs of the former (in Japanese). Rep. Tottori Mycol. Inst. 23:1-54.
49. Tokimoto, K., Komatsu, M. and Fukumasa-nakai, Y. 1994. Establishing the selection method for the Lentinula edodes strains resistant to Trichoderma spp. Proc. Japan Acad. 70:112-116.
50. Watanabe, S., Kumakura, K., Kato, H., Iyozumi, H., Togawa, M. and Nagayama, K. 2005. Identification of Trichoderma SKT-1, a biological control agent against seedborne pathogens of rice. J. Gen. Plant Pathol. 71:351-356.
51. White, T. J., Bruns, T. D., Lee, S. B. and Taylor, J. W. 1990. Amplification and direct sequencing of fungal ribosomal DNA for phylogenetics. In: PCR protocols: A guide to the methods and applications. ed. by M. A. Innes, D. H. Gelfand, J. J. Sninsky and T. J. White, pp. 315. Academic Press, New York, USA.
52. Yamamoto, Y., Shirono, H., Kono, K. and Ohashi, Y. 1997. Immunopotentiating activity of the water-soluble lignin rich fraction prepared from LEM--the extract of the solid culture medium of Lentinus edodes mycelia. Biosci. Biotechnol. Bio-chem. 61:1909-1912.