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Volumn , Issue , 2005, Pages 12-20

Graphical models of residue coupling in protein families

Author keywords

Evolutionary co variation; Graphical models; Residue coupling networks; Sequence stnicture fimction relationships

Indexed keywords

ABDUCTIVE REASONING; COUPLING NETWORK; COUPLING RELATIONSHIPS; EVOLUTIONARY CO-VARIATION; G-PROTEIN COUPLED RECEPTORS; GRAPHICAL MODEL; PROBABILISTIC MODELING; SEQUENCE-STNICTURE-FIMCTION RELATIONSHIPS;

EID: 84885676090     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1134030.1134033     Document Type: Conference Paper
Times cited : (8)

References (28)
  • 1
    • 0032925848 scopus 로고    scopus 로고
    • Positional dependence, cliques, and predictive motifs in the bHLH protein domain
    • W. Atchlcy, W. Terhallc, and A. Dress. Positional Dependence, Cliques, and Predictive Motifs in the bHLH Protein Domain. Journal of Molecular Evolution, Vol. 48:501-516, 1999.
    • (1999) Journal of Molecular Evolution , vol.48 , pp. 501-516
    • Atchlcy, W.1    Terhallc, W.2    Dress, A.3
  • 2
    • 15944375458 scopus 로고    scopus 로고
    • PDZBasc: A protein-protein interaction database for PDZ-domains
    • T. Beuming, L. Skrabanek, M. Niv, P. Mukherjee, and H. Weinstoin. PDZBasc: A Protein-Protein Interaction Database for PDZ-Domains. Bioinformatics, Vol. 21(6):827-828, 2005.
    • (2005) Bioinformatics , vol.21 , Issue.6 , pp. 827-828
    • Beuming, T.1    Skrabanek, L.2    Niv, M.3    Mukherjee, P.4    Weinstoin, H.5
  • 4
    • 3543089710 scopus 로고    scopus 로고
    • A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments
    • J. Dekkcr, A. Fodor, R. Aldriclr, and G. Yollen. A Perturbation-Based Method for Calculating Explicit Likelihood of Evolutionary Co-Variance in Multiple Sequence Alignments. Bioinformatics, Vol. 20(10):1565-1572, 2004.
    • (2004) Bioinformatics , vol.20 , Issue.10 , pp. 1565-1572
    • Dekkcr, J.1    Fodor, A.2    Aldriclr, R.3    Yollen, G.4
  • 5
    • 15944403709 scopus 로고    scopus 로고
    • Model selection for gaussian concentration graphs
    • M. Drton and M. Perlman. Model Selection for Gaussian Concentration Graphs. Biom.etrika, Vol. 91(3):591-602, 2004.
    • (2004) Biom. Etrika , vol.91 , Issue.3 , pp. 591-602
    • Drton, M.1    Perlman, M.2
  • 6
    • 3042842115 scopus 로고    scopus 로고
    • Influence of conservation on calculations of amino acid covariance in multiple sequence alignments
    • A. Fodor and R. Aldriclr. Influence of Conservation on Calculations of Amino Acid Covariance in Multiple Sequence Alignments. Proteins: Structure, Function, and Bioinformatics, Vol. 56:211-221, 2004.
    • (2004) Proteins: Structure, Function, and Bioinformatics , vol.56 , pp. 211-221
    • Fodor, A.1    Aldriclr, R.2
  • 7
    • 2442498470 scopus 로고    scopus 로고
    • On evolutionary conservation of thermodynamic coupling in proteins
    • Apr
    • A. Fodor and R. Aldrich. On Evolutionary Conservation of Thermodynamic Coupling in Proteins. Journal of Biological Chemistry, Vol. 279(18) :19046-19050, Apr 2004.
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.18 , pp. 19046-19050
    • Fodor, A.1    Aldrich, R.2
  • 9
    • 0033435204 scopus 로고    scopus 로고
    • Detection of protein fold similarity based on correlation of amino acid properties
    • Dec
    • I. Grigoriev and S.-H. Kim. Detection of Protein Fold Similarity Based on Correlation of Amino Acid Properties. Proceedings of the National Academy of Sciences, USA, Vol. 96(25):14318-14323, Dec 1999.
    • (1999) Proceedings of the National Academy of Sciences, USA , vol.96 , Issue.25 , pp. 14318-14323
    • Grigoriev, I.1    Kim, S.-H.2
  • 10
    • 0034740693 scopus 로고    scopus 로고
    • Mechanism and role of PDZ domains in signaling complex assembly
    • B. Harris and W. Lim. Mechanism and Role of PDZ Domains in Signaling Complex Assembly. Journal of Cell Science, Vol. 114:3219-3231, 2001.
    • (2001) Journal of Cell Science , vol.114 , pp. 3219-3231
    • Harris, B.1    Lim, W.2
  • 11
    • 0030322783 scopus 로고    scopus 로고
    • Double-mutant cycles: A powerful tool for analyzing protein structure and function
    • A. Horovitz. Double-Mutant Cycles: A Powerful Tool for Analyzing Protein Structure and Function. Fold. Dcs., Vol. 1:R121-R126, 1996.
    • (1996) Fold. Dcs. , vol.1
    • Horovitz, A.1
  • 13
    • 0037155199 scopus 로고    scopus 로고
    • PDZ domains: Structural modules for protein complex assembly
    • Feb
    • A. Hung and M. Sheng. PDZ Domains: Structural Modules for Protein Complex Assembly. Journal of Biological Chemistry, Vol. 277(8) :5699-5702, Feb 2002.
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.8 , pp. 5699-5702
    • Hung, A.1    Sheng, M.2
  • 15
    • 0036721218 scopus 로고    scopus 로고
    • Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations
    • I. Kass and A. Horovitz. Mapping Pathways of Allosteric Communication in GroEL by Analysis of Correlated Mutations. Proteins: Structure. Function, and Genetics, Vol. 48:611-617, 2002.
    • (2002) Proteins: Structure. Function, and Genetics , vol.48 , pp. 611-617
    • Kass, I.1    Horovitz, A.2
  • 16
    • 0027297096 scopus 로고
    • Covariation of mutations in the V3 Loop of HIV type 1 envelope protein: An information theoretic analysis
    • Aug
    • B. Korber, R. Farber, D. Wolpert, and A. Lapedes. Covariation of Mutations in the V3 Loop of HIV Type 1 Envelope Protein: An Information Theoretic Analysis. Proceedings of the National Academy of Sciences, USA, Vol. 90:7176-7180, Aug 1993.
    • (1993) Proceedings of the National Academy of Sciences, USA , vol.90 , pp. 7176-7180
    • Korber, B.1    Farber, R.2    Wolpert, D.3    Lapedes, A.4
  • 18
    • 0033536602 scopus 로고    scopus 로고
    • Evolutionarily conserved pathways of energetic connectivity in protein families
    • Oct
    • S. Lockless and R. Ranganathan. Evolutionarily Conserved Pathways of Energetic Connectivity in Protein Families. Science, Vol. 286(5438):295-299, Oct 1999.
    • (1999) Science , vol.286 , Issue.5438 , pp. 295-299
    • Lockless, S.1    Ranganathan, R.2
  • 20
    • 0141482410 scopus 로고    scopus 로고
    • Common structural cliques: A tool for protein structure and function analysis
    • M. Milik, S. Szalma, and K. Olszewski. Common Structural Cliques: A Tool for Protein Structure and Function Analysis. Protein Engineering, Vol. 16(8):542-552, 2003.
    • (2003) Protein Engineering , vol.16 , Issue.8 , pp. 542-552
    • Milik, M.1    Szalma, S.2    Olszewski, K.3
  • 21
    • 0033550256 scopus 로고    scopus 로고
    • Effective use of sequence correlation and conservation in fold recognition
    • O. Olmea, B. Rost, and A. Valencia. Effective Use of Sequence Correlation and Conservation in Fold Recognition. Journal of Molecular Biology, Vol. 295:1221-1239, 1999.
    • (1999) Journal of Molecular Biology , vol.295 , pp. 1221-1239
    • Olmea, O.1    Rost, B.2    Valencia, A.3
  • 22
  • 23
    • 0027248706 scopus 로고
    • Engineering multiple properties of a protein by combinatorial mutagenesis
    • Sep
    • W. Sandberg and T. Terwilliger. Engineering Multiple Properties of a Protein by Combinatorial Mutagenesis. Proceedings of the National Academy of Sciences, USA, Vol. 90(18):8367-8371, Sep 1993.
    • (1993) Proceedings of the National Academy of Sciences, USA , vol.90 , Issue.18 , pp. 8367-8371
    • Sandberg, W.1    Terwilliger, T.2
  • 24
    • 0042767572 scopus 로고    scopus 로고
    • Using multiple sequence correlation analysis to characterize functionally important protein regions
    • M. Saraf, G. Moore, and C. Maranas. Using Multiple Sequence Correlation Analysis to Characterize Functionally Important Protein Regions. Protein Engineering, Vol. 16(6):397-406, 2003.
    • (2003) Protein Engineering , vol.16 , Issue.6 , pp. 397-406
    • Saraf, M.1    Moore, G.2    Maranas, C.3
  • 26
    • 0037219686 scopus 로고    scopus 로고
    • Evolutionary conserved networks of residues mediate allosteric communication in proteins
    • Jan
    • G. Suel, S. Lockless, M. Wall, and R. Ranganathan. Evolutionary Conserved Networks of Residues Mediate Allosteric Communication in Proteins. Nature Structural Biology, Vol. 10:59-69, Jan 2003.
    • (2003) Nature Structural Biology , vol.10 , pp. 59-69
    • Suel, G.1    Lockless, S.2    Wall, M.3    Ranganathan, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.