메뉴 건너뛰기




Volumn 3, Issue SEP, 2013, Pages

Brain transcriptome of the violet-eared waxbill Uraeginthus granatina and recent evolution in the songbird genome

Author keywords

Aggression; Genome; Positive selection; Sex chromosome; Social behaviour; Zebra finch

Indexed keywords

TRANSCRIPTOME;

EID: 84885624025     PISSN: None     EISSN: 20462441     Source Type: Journal    
DOI: 10.1098/rsob.130063     Document Type: Article
Times cited : (16)

References (78)
  • 1
    • 11144331051 scopus 로고    scopus 로고
    • Accelerated evolution of nervous system genes in the origin of Homo sapiens
    • DOI 10.1016/j.cell.2004.11.040, PII S0092867404011432
    • Dorus S, Vallender EJ, Evans PD, Anderson JR, Gilbert SL, Mahowald M, Wyckoff GJ, Malcom CM, Lahn BT. 2004 Accelerated evolution of nervous system genes in the origin of Homo sapiens. Cell 119, 1027-1040. (doi:10.1016/j.cell. 2004. 11.040) (Pubitemid 40037615)
    • (2004) Cell , vol.119 , Issue.7 , pp. 1027-1040
    • Dorus, S.1    Vallender, E.J.2    Evans, P.D.3    Anderson, J.R.4    Gilbert, S.L.5    Mahowald, M.6    Wyckoff, G.J.7    Malcom, C.M.8    Lahn, B.T.9
  • 2
    • 77649215825 scopus 로고    scopus 로고
    • Human and non-human primate genomes share hotspots of positive selection
    • doi:10.1371/journal.pgen.1000840
    • Enard D, Depaulis F, Crollius HR. 2010 Human and non-human primate genomes share hotspots of positive selection. PLoS Genet. 6, e1000840. (doi:10.1371/journal.pgen.1000840)
    • (2010) PLoS Genet , vol.6
    • Enard, D.1    Depaulis, F.2    Crollius, H.R.3
  • 3
    • 76049088399 scopus 로고    scopus 로고
    • Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain
    • doi:10.1073/pnas. 0911376106
    • Nowick K, Gernat T, Almaas E, Stubbs L. 2009 Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain. Proc. Natl Acad. Sci. USA 106, 22 358-22 363. (doi:10.1073/pnas. 0911376106)
    • (2009) Proc. Natl Acad. Sci. USA 106 , vol.22 , pp. 358-22363
    • Nowick, K.1    Gernat, T.2    Almaas, E.3    Stubbs, L.4
  • 4
    • 36048950933 scopus 로고    scopus 로고
    • Gene family evolution across 12 Drosophila genomes
    • DOI 10.1371/journal.pgen.0030197
    • Hahn MW, Han MV, Han SG. 2007 Gene family evolution across 12 Drosophila genomes. PLoS Genet. 3, e197. (doi:10.1371/journal.pgen.0030197) (Pubitemid 350291574)
    • (2007) PLoS Genetics , vol.3 , Issue.11 , pp. 2135-2146
    • Hahn, M.W.1    Han, M.V.2    Han, S.-G.3
  • 5
    • 38549148421 scopus 로고    scopus 로고
    • Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes
    • DOI 10.1101/gr.6249707
    • Heger A, Ponting CP. 2007 Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes. Genome Res. 17, 1837-1849. (doi:10.1101/gr.6249707) (Pubitemid 351360007)
    • (2007) Genome Research , vol.17 , Issue.12 , pp. 1837-1849
    • Heger, A.1    Ponting, C.P.2
  • 6
    • 47149117454 scopus 로고    scopus 로고
    • Evolution of genes and genomes on the Drosophila phylogeny
    • doi:10.1038/nature06341
    • Clark AG et al. 2007 Evolution of genes and genomes on the Drosophila phylogeny. Nature 450, 203-218. (doi:10.1038/nature06341)
    • (2007) Nature , vol.450 , pp. 203-218
    • Clark, A.G.1
  • 7
    • 10644283823 scopus 로고    scopus 로고
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • DOI 10.1038/nature03154
    • Hillier LW et al. 2004 Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432, 695-716. (doi:10.1038/nature03154) (Pubitemid 39656285)
    • (2004) Nature , vol.432 , Issue.7018 , pp. 695-716
  • 8
    • 77950376512 scopus 로고    scopus 로고
    • The genome of a songbird
    • doi:10.1038/nature08819
    • Warren WC et al. 2010 The genome of a songbird. Nature 464, 757-762. (doi:10.1038/nature08819)
    • (2010) Nature , vol.464 , pp. 757-762
    • Warren, W.C.1
  • 9
    • 77957903598 scopus 로고    scopus 로고
    • Multi-platform nextgeneration sequencing of the domestic turkey (Meleagris gallopavo): Genome assembly and analysis
    • doi:10.1371/ journal.pbio.1000475
    • Dalloul RA et al. 2010 Multi-platform nextgeneration sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. PLoS Biol. 8, e1000475. (doi:10.1371/ journal.pbio.1000475)
    • (2010) PLoS Biol , vol.8
    • Dalloul, R.A.1
  • 10
    • 84874376138 scopus 로고    scopus 로고
    • 2013 Genomic diversity and evolution of the head crest in the rock pigeon
    • doi:10.1126/science.1230422
    • Shapiro MD et al. 2013 Genomic diversity and evolution of the head crest in the rock pigeon. Science 339, 1063-1067. (doi:10.1126/science.1230422)
    • Science , vol.339 , pp. 1063-1067
    • Shapiro, M.D.1
  • 11
    • 84879696615 scopus 로고    scopus 로고
    • The duck genome and transcriptome provide insight into an avian influenza virus reservoir species
    • doi:10.1038/ng.2657
    • Huang Y et al. 2013 The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Nat. Genet. 45, 776-783. (doi:10.1038/ng.2657)
    • (2013) Nat. Genet. , vol.45 , pp. 776-783
    • Huang, Y.1
  • 12
    • 84878588665 scopus 로고    scopus 로고
    • Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle
    • doi:10.1038/ng.2588
    • Zhan X et al. 2013 Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle. Nat. Genet. 45, 563-566. (doi:10.1038/ng.2588)
    • (2013) Nat. Genet. , vol.45 , pp. 563-566
    • Zhan, X.1
  • 13
    • 70349291201 scopus 로고    scopus 로고
    • Integrating genomes, brain and behavior in the study of songbirds
    • doi:10.1016/j.cub.2009.07.006
    • Clayton DF, Balakrishnan CN, London SE. 2009 Integrating genomes, brain and behavior in the study of songbirds. Curr. Biol. 19, R865-R873. (doi:10.1016/j.cub.2009.07.006)
    • (2009) Curr. Biol. , vol.19
    • Clayton, D.F.1    Balakrishnan, C.N.2    London, S.E.3
  • 14
    • 77955900740 scopus 로고    scopus 로고
    • The zebra finch: The ultimate Australian supermodel
    • doi:10.1071/MUv110n3-ED
    • Griffith SC, Buchanan KL. 2010 The zebra finch: the ultimate Australian supermodel. Emu 110, v-xii. (doi:10.1071/MUv110n3-ED)
    • (2010) Emu , vol.110
    • Griffith, S.C.1    Buchanan, K.L.2
  • 16
    • 34248137504 scopus 로고    scopus 로고
    • Fast-X on the Z: Rapid evolution of sex-linked genes in birds
    • DOI 10.1101/gr.6031907
    • Mank JE, Axelsson E, Ellegren H. 2007 Fast-X on the Z: rapid evolution of sex-linked genes in birds. Genome Res. 17, 618-624. (doi:10.1101/gr.6031907) (Pubitemid 46715512)
    • (2007) Genome Research , vol.17 , Issue.5 , pp. 618-624
    • Mank, J.E.1    Axelsson, E.2    Ellegren, H.3
  • 17
    • 77953729069 scopus 로고    scopus 로고
    • Molecular evolution of genes in avian genomes
    • doi:10. 1186/gβ-2010-11-6-r68
    • Nam K et al. 2010 Molecular evolution of genes in avian genomes. Genome Biol. 11, R68. (doi:10. 1186/gβ-2010-11-6-r68)
    • (2010) Genome Biol. , vol.11
    • Nam, K.1
  • 18
    • 41049092682 scopus 로고    scopus 로고
    • Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages
    • doi:10.1186/ 1741-7007-6-6
    • Brown JW, Rest JS, Garciα-Moreno J, Sorenson MD, Mindell DP. 2008 Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages. BMC Biol. 6, 6. (doi:10.1186/ 1741-7007-6-6)
    • (2008) BMC Biol. , vol.6 , pp. 6
    • Brown, J.W.1    Rest, J.S.2    Garcia-Moreno, J.3    Sorenson, M.D.4    Mindell, D.P.5
  • 21
    • 77951918115 scopus 로고    scopus 로고
    • Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species
    • doi:10. 1111/j.1365-294X.2009.04487.x
    • Kunstner A et al. 2010 Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species. Mol. Ecol. 19, 266-276. (doi:10. 1111/j.1365-294X.2009.04487.x)
    • (2010) Mol. Ecol. , vol.19 , pp. 266-276
    • Kunstner, A.1
  • 22
    • 71049176982 scopus 로고    scopus 로고
    • Genome 10K: A proposal to obtain whole-genome sequence for 10 000 vertebrate species
    • doi:10. 1093/jhered/esp086
    • Haussler D et al. 2009 Genome 10K: a proposal to obtain whole-genome sequence for 10 000 vertebrate species. J. Hered. 100, 659-674. (doi:10. 1093/jhered/esp086)
    • (2009) J. Hered. , vol.100 , pp. 659-674
    • Haussler, D.1
  • 23
    • 79957800445 scopus 로고    scopus 로고
    • Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing
    • doi:10.1186/1471-2164-12-283
    • Santure AW, Gratten J, Mossman JA, Sheldon BC, Slate J. 2011 Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing. BMC Genomics 12, 283. (doi:10.1186/1471-2164-12- 283)
    • (2011) BMC Genomics , vol.12 , pp. 283
    • Santure, A.W.1    Gratten, J.2    Mossman, J.A.3    Sheldon, B.C.4    Slate, J.5
  • 24
    • 84864954193 scopus 로고    scopus 로고
    • Transcriptome analysis of a North American songbird Melospiza melodia
    • doi:10.1093/dnares/dss015
    • Srivastava A, Winker K, Shaw TI, Jones KL, Glenn TC. 2012 Transcriptome analysis of a North American songbird, Melospiza melodia. DNA Res. 19, 325-333. (doi:10.1093/dnares/dss015)
    • (2012) DNA Res. , vol.19 , pp. 325-333
    • Srivastava, A.1    Winker, K.2    Shaw, T.I.3    Jones, K.L.4    Glenn, T.C.5
  • 25
    • 84863510246 scopus 로고    scopus 로고
    • De novo transcriptome sequencing in a songbird the dark-eyed junco (Junco hyemalis): Genomic tools for an ecological model system
    • doi:10. 1186/1471-2164-13-305
    • Peterson MP et al. 2012 De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): genomic tools for an ecological model system. BMC Genomics 13, 305. (doi:10. 1186/1471-2164-13-305)
    • (2012) BMC Genomics , vol.13 , pp. 305
    • Peterson, M.P.1
  • 26
    • 78650039219 scopus 로고    scopus 로고
    • Next generation sequencing and analysis of a conserved transcriptome of New Zealand's kiwi
    • doi:10.1186/1471- 2148-10-387
    • Subramanian S, Huynen L, Millar CD, Lambert DM. 2010 Next generation sequencing and analysis of a conserved transcriptome of New Zealand's kiwi. BMC Evol. Biol. 10, 387. (doi:10.1186/1471- 2148-10-387)
    • (2010) BMC Evol. Biol. , vol.10 , pp. 387
    • Subramanian, S.1    Huynen, L.2    Millar, C.D.3    Lambert, D.M.4
  • 27
    • 84864185743 scopus 로고    scopus 로고
    • Transcriptome sequencing of black grouse (Tetrao tetrix) for immune gene discovery and microsatellite development
    • doi:10.1098/ rsob.120054
    • Wang B, Ekblom R, Castoe TA, Jones EP, Kozma R, Bongcam-Rudloff E, Pollock DD, Hoglund J. 2012 Transcriptome sequencing of black grouse (Tetrao tetrix) for immune gene discovery and microsatellite development. Open Biol. 2, 120054. (doi:10.1098/ rsob.120054)
    • (2012) Open Biol. , vol.2 , pp. 120054
    • Wang, B.1    Ekblom, R.2    Castoe, T.A.3    Jones, E.P.4    Kozma, R.5    Bongcam-Rudloff, E.6    Pollock, D.D.7    Hoglund, J.8
  • 29
    • 0031880080 scopus 로고    scopus 로고
    • Vasotocin and vasoactive intestinal polypeptide modulate aggression in a territorial songbird, the violet-eared waxbill (Estrildidae: Uraeginthus granatina)
    • DOI 10.1006/gcen.1998.7112
    • Goodson JL. 1998 Vasotocin and vasoactive intestinal polypeptide modulate aggression in a territorial songbird, the violet-eared waxbill (Estrildidae: Uraeginthus granatina). Gen. Comp. Endocrinol. 111, 233-244. (doi:10.1006/gcen. 1998.7112) (Pubitemid 28365864)
    • (1998) General and Comparative Endocrinology , vol.111 , Issue.2 , pp. 233-244
    • Goodson, J.L.1
  • 30
    • 67749088280 scopus 로고    scopus 로고
    • Dynamic neuromodulation of aggression by vasotocin: Influence of social context and social phenotype in territorial songbirds
    • doi:10. 1098/rsbl.2009.0316
    • Goodson JL, Kabelik D, Schrock SE. 2009 Dynamic neuromodulation of aggression by vasotocin: influence of social context and social phenotype in territorial songbirds. Biol. Lett. 5, 554-556. (doi:10. 1098/rsbl.2009.0316)
    • (2009) Biol. Lett. , vol.5 , pp. 554-556
    • Goodson, J.L.1    Kabelik, D.2    Schrock, S.E.3
  • 31
    • 33750938127 scopus 로고    scopus 로고
    • Valence-sensitive neurons exhibit divergent functional profiles in gregarious and asocial species
    • doi:10.1073/pnas. 0606278103
    • Goodson JL, Wang YW. 2006 Valence-sensitive neurons exhibit divergent functional profiles in gregarious and asocial species. Proc. Natl Acad. Sci. USA 103, 17 013-17 017. (doi:10.1073/pnas. 0606278103)
    • (2006) Proc. Natl Acad. Sci. USA 103 , vol.17 , pp. 013-17017
    • Goodson, J.L.1    Wang, Y.W.2
  • 32
    • 1642362564 scopus 로고    scopus 로고
    • Clade-limited colonization in brood parasitic finches (Vidua spp.)
    • DOI 10.1080/10635150490265021
    • Sorenson MD, Balakrishnan CN, Payne RB. 2004 Clade-limited colonization in brood parasitic finches (Vidua spp.). Syst. Biol. 53, 140-153. (doi:10.1080/ 10635150490265021) (Pubitemid 38370428)
    • (2004) Systematic Biology , vol.53 , Issue.1 , pp. 140-153
    • Sorenson, M.D.1    Balakrishnan, C.N.2    Payne, R.B.3
  • 33
    • 0041357185 scopus 로고    scopus 로고
    • Speciation by host switch in brood parasitic indigobirds
    • DOI 10.1038/nature01863
    • Sorenson MD, Sefc KM, Payne RB. 2003 Speciation by host switch in brood parasitic indigobirds. Nature 424, 928-931. (doi:10.1038/nature01863) (Pubitemid 37051681)
    • (2003) Nature , vol.424 , Issue.6951 , pp. 928-931
    • Sorenson, M.D.1    Sefc, K.M.2    Payne, R.B.3
  • 34
    • 0028131990 scopus 로고
    • Song-induced ZENK gene expression in auditory pathways of songbird brain and its relation to the song control system
    • Mello CV, Clayton DF. 1994 Song-induced zenk gene-expression in auditory pathways of songbird brain and its relation to the song control-system. J. Neurosci. 14, 6652-6666. (Pubitemid 24333084)
    • (1994) Journal of Neuroscience , vol.14 , Issue.11 , pp. 6652-6666
    • Mello, C.V.1    Clayton, D.F.2
  • 35
    • 0028827552 scopus 로고
    • Repeated exposure to one song leads to a rapid and persistent decline in an immediate early gene's response to that song in zebra finch telencephalon
    • Mello CV, Nottebohm F, Clayton DF. 1995 Repeated exposure to one song leads to a rapid and persistent decline in an immediate early gene's response to that song in zebra finch telencephalon. J. Neurosci. 15, 6919-6925.
    • (1995) J. Neurosci. , vol.15 , pp. 6919-6925
    • Mello, C.V.1    Nottebohm, F.2    Clayton, D.F.3
  • 36
    • 0026636761 scopus 로고
    • Song presentation induces gene-expression in the songbird forebrain
    • doi:10.1073/pnas.89.15.6818
    • Mello CV, Vicario DS, Clayton DF. 1992 Song presentation induces gene-expression in the songbird forebrain. Proc. Natl Acad. Sci. USA 89, 6818-6822. (doi:10.1073/pnas.89.15.6818)
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 6818-6822
    • Mello, C.V.1    Vicario, D.S.2    Clayton, D.F.3
  • 38
    • 27644529439 scopus 로고    scopus 로고
    • Immediate early gene expression following exposure to acoustic and visual components of courtship in zebra finches
    • DOI 10.1016/j.bbr.2005.07.002, PII S0166432805002640
    • Avey M, Phillmore L, Macdougall-Schackleton S. 2005 Immediate early gene expression following exposure to acoustic and visual components of courtship in zebra finches. Behav. Brain Res. 165, 247-253. (doi:10.1016/j.bbr.2005.07.002) (Pubitemid 41565535)
    • (2005) Behavioural Brain Research , vol.165 , Issue.2 , pp. 247-253
    • Avey, M.T.1    Phillmore, L.S.2    MacDougall-Shackleton, S.A.3
  • 40
    • 0042020009 scopus 로고    scopus 로고
    • Differential expression of the immediate early genes FOS and ZENK following auditory stimulation in the juvenile male and female zebra finch
    • DOI 10.1016/S0169-328X(03)00288-2
    • Bailey D, Wade J. 2003 Differential expression of the immediate early genes FOS and ZENK following auditory stimulation in the juvenile male and female zebra finch. Mol. Brain Res. 116, 147-154. (doi:10.1016/S0169-328X(03) 00288-2) (Pubitemid 36993705)
    • (2003) Molecular Brain Research , vol.116 , Issue.1-2 , pp. 147-154
    • Bailey, D.J.1    Wade, J.2
  • 41
    • 77949442104 scopus 로고    scopus 로고
    • Calling SNPs without a reference sequence
    • doi:10.1186/1471-2105-11-130
    • Ratan A, Yu Z, Hayes VM, Schuster SC, Miller W. 2010 Calling SNPs without a reference sequence. BMC Bioinform. 11, 130. (doi:10.1186/1471-2105- 11-130)
    • (2010) BMC Bioinform. , vol.11 , pp. 130
    • Ratan, A.1    Yu, Z.2    Hayes, V.M.3    Schuster, S.C.4    Miller, W.5
  • 42
    • 77950660808 scopus 로고    scopus 로고
    • Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution
    • doi:10.1101/ gr.103663.109
    • Volker M, Backstrom N, Skinner BM, Langley EJ, Bunzey SK, Ellegren H, Griffin DK. 2010 Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution. Genome Res. 20, 503-511. (doi:10.1101/ gr.103663.109)
    • (2010) Genome Res. , vol.20 , pp. 503-511
    • Volker, M.1    Backstrom, N.2    Skinner, B.M.3    Langley, E.J.4    Bunzey, S.K.5    Ellegren, H.6    Griffin, D.K.7
  • 43
    • 9744246531 scopus 로고
    • Chromosomal evolution within the family Estrildidae (Aves) 0.3. The Estrildae (waxbill finches)
    • doi:10.1007/ bf00123167
    • Christidis L. 1987 Chromosomal evolution within the family Estrildidae (Aves) 0.3. The Estrildae (waxbill finches). Genetica 72, 93-100. (doi:10.1007/ bf00123167)
    • (1987) Genetica , vol.72 , pp. 93-100
    • Christidis, L.1
  • 44
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: A multiple sequence alignment method with reduced time and space complexity
    • doi:10.1186/ 1471-2105-5-113
    • Edgar RC. 2004 MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinform. 5, 113. (doi:10.1186/ 1471-2105-5-113)
    • (2004) BMC Bioinform , vol.5 , pp. 113
    • Edgar, R.C.1
  • 45
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • DOI 10.1093/nar/gkh340
    • Edgar RC. 2004 MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797. (doi:10.1093/ nar/gkh340) (Pubitemid 38832724)
    • (2004) Nucleic Acids Research , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 46
    • 79957957884 scopus 로고    scopus 로고
    • High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes
    • doi:10.1101/ gr.115949.110
    • Markovα-Raina P, Petrov D. 2011 High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes. Genome Res. 21, 863-874. (doi:10.1101/ gr.115949.110)
    • (2011) Genome Res. , vol.21 , pp. 863-874
    • Markova-Raina, P.1    Petrov, D.2
  • 47
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments
    • DOI 10.1093/nar/gkl315
    • Suyama M, Torrents D, Bork P. 2006 PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res. 34, W609-W612. (doi:10.1093/ nar/gkl315) (Pubitemid 44529842)
    • (2006) Nucleic Acids Research , vol.34 , Issue.WEB. SERV. ISS.
    • Suyama, M.1    Torrents, D.2    Bork, P.3
  • 48
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • DOI 10.1093/molbev/msm088
    • Yang ZH. 2007 PAML 4: Phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24,1586-1591. (doi:10.1093/molbev/msm088) (Pubitemid 47236688)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1586-1591
    • Yang, Z.1
  • 49
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang ZH. 1997 PAML: a program package for phylogenetic analysis by maximum likelihood. Comp. Appl. Biosci. 13, 555-556.
    • (1997) Comp. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.H.1
  • 50
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • doi:10.1111/ 1467-9868.00346
    • Storey JD. 2002 A direct approach to false discovery rates. J. R. Stat. Soc. B 64, 479-498. (doi:10.1111/ 1467-9868.00346)
    • (2002) J. R. Stat. Soc. B , vol.64 , pp. 479-498
    • Storey, J.D.1
  • 51
    • 62549089305 scopus 로고    scopus 로고
    • CORNA: Testing gene lists for regulation by microRNAs
    • doi:10.1093/bioinformatics/btp059
    • Wu X, Watson M. 2009 CORNA: testing gene lists for regulation by microRNAs. Bioinformatics 25, 832-833. (doi:10.1093/bioinformatics/btp059)
    • (2009) Bioinformatics , vol.25 , pp. 832-833
    • Wu, X.1    Watson, M.2
  • 52
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini H, Hochberg Y. 1995 Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57, 289-300.
    • (1995) J. R. Stat. Soc. , vol.B 57 , pp. 289-300
    • Benjamini, H.1    Hochberg, Y.2
  • 53
    • 77950535845 scopus 로고    scopus 로고
    • Digital gene expression analysis of the zebra finch genome
    • doi:10.1186/ 1471-2164-11-219
    • Ekblom R, Balakrishnan CN, Burke T, Slate J. 2010 Digital gene expression analysis of the zebra finch genome. BMC Genomics 11, 219. (doi:10.1186/ 1471-2164-11-219)
    • (2010) BMC Genomics , vol.11 , pp. 219
    • Ekblom, R.1    Balakrishnan, C.N.2    Burke, T.3    Slate, J.4
  • 54
    • 0033639150 scopus 로고    scopus 로고
    • Statistical methods for detecting molecular adaptation
    • doi:10.1016/S0169-5347 (00)01994-7
    • Yang ZH, Bielawski JP. 2000 Statistical methods for detecting molecular adaptation. Trends Ecol. Evol. 15, 496-503. (doi:10.1016/S0169-5347 (00)01994-7)
    • (2000) Trends Ecol. Evol. , vol.15 , pp. 496-503
    • Zh, Y.1    Bielawski, J.P.2
  • 55
    • 67649604674 scopus 로고    scopus 로고
    • Evidence for increased olfactory receptor gene repertoire size in two nocturnal bird species with well-developed olfactory ability
    • doi:10. 1186/1471-2148-9-117
    • Steiger SS, Fidler AE, Kempenaers B. 2009 Evidence for increased olfactory receptor gene repertoire size in two nocturnal bird species with well-developed olfactory ability. BMC Evol. Biol. 9, 117. (doi:10. 1186/1471-2148-9-117)
    • (2009) BMC Evol. Biol. , vol.9 , pp. 117
    • Steiger, S.S.1    Fidler, A.E.2    Kempenaers, B.3
  • 56
    • 51449094204 scopus 로고    scopus 로고
    • Avian olfactory receptor gene repertoires: Evidence for a well-developed sense of smell in birds? Proc
    • doi:10.1098/rspb. 2008.0607)
    • Steiger SS, Fidler AE, Valcu M, Kempenaers B. 2008 Avian olfactory receptor gene repertoires: evidence for a well-developed sense of smell in birds? Proc. R. Soc. B 275, 2309-2317. (doi:10.1098/rspb. 2008.0607).
    • (2008) R. Soc. , vol.B 275 , pp. 2309-2317
    • Steiger, S.S.1    Fidler, A.E.2    Valcu, M.3    Kempenaers, B.4
  • 57
    • 78650736106 scopus 로고    scopus 로고
    • Neural correlates of behavioural olfactory sensitivity changes seasonally in European starlings
    • doi:10 1371/journal.pone.0014337
    • De Groof G, Gwinner H, Steiger S, Kempenaers B, Van der Linden A. 2010 Neural correlates of behavioural olfactory sensitivity changes seasonally in European starlings. PLoS ONE 5, e14337. (doi:10. 1371/journal.pone.0014337)
    • (2010) PLoS ONE 5, e14337
    • De Groof, G.1    Gwinner, H.2    Steiger, S.3    Kempenaers, B.4    Van Der Linden, A.5
  • 58
    • 84860528773 scopus 로고    scopus 로고
    • Are olfactory cues involved in nest recognition in two social species of estrildid finches?
    • doi:10.1371/ journal.pone.0036615
    • Krause ET, Caspers BA. 2012 Are olfactory cues involved in nest recognition in two social species of estrildid finches? PLoS ONE 7, e36615. (doi:10.1371/ journal.pone.0036615)
    • (2012) PLoS ONE 7, e36615
    • Krause, E.T.1    Caspers, B.A.2
  • 59
    • 84860541156 scopus 로고    scopus 로고
    • Olfactory kin recognition in a songbird
    • doi:10.1098/rsbl.2011.1093
    • Krause ET, Krueger O, Kohlmeier P, Caspers BA. 2012 Olfactory kin recognition in a songbird. Biol. Lett. 8, 327-329. (doi:10.1098/rsbl.2011.1093)
    • (2012) Biol. Lett. , vol.8 , pp. 327-329
    • Krause, E.T.1    Krueger, O.2    Kohlmeier, P.3    Caspers, B.A.4
  • 61
    • 34548851759 scopus 로고    scopus 로고
    • Characterizing the expression of the human olfactory receptor gene family using a novel DNA microarray
    • doi:10.1186/ gβ-2007-8-5-r86
    • Zhang X, De la Cruz O, Pinto JM, Nicolae D, Firestein S, Gilad Y. 2007 Characterizing the expression of the human olfactory receptor gene family using a novel DNA microarray. Genome Biol. 8, R86. (doi:10.1186/ gβ-2007-8-5-r86)
    • (2007) Genome Biol. , vol.8
    • Zhang, X.1    De La Cruz, O.2    Pinto, J.M.3    Nicolae, D.4    Firestein, S.5    Gilad, Y.6
  • 62
    • 0029968643 scopus 로고    scopus 로고
    • Olfaction in birds: Differential embryonic expression of nine putative odorant receptor genes in the avian olfactory system
    • DOI 10.1016/0925-4773(95)00491-2
    • Nef S, Allaman I, Fiumelli H, DeCastro E, Nef P. 1996 Olfaction in birds: Differential embryonic expression of nine putative odorant receptor genes in the avian olfactory system. Mech. Dev. 55, 65-77. (doi:10. 1016/0925-4773(95) 00491-2) (Pubitemid 26091971)
    • (1996) Mechanisms of Development , vol.55 , Issue.1 , pp. 65-77
    • Nef, S.1    Allaman, I.2    Fiumelli, H.3    De Castro, E.4    Nef, P.5
  • 64
    • 54249119952 scopus 로고    scopus 로고
    • Detection of olfactory receptor transcripts in bird testes
    • doi:10.1093/ jhered/esn051
    • Steiger SS, Fidler AE, Kempenaers B. 2008 Detection of olfactory receptor transcripts in bird testes. J. Hered. 99, 624-628. (doi:10.1093/ jhered/esn051)
    • (2008) J. Hered. , vol.99 , pp. 624-628
    • Steiger, S.S.1    Fidler, A.E.2    Kempenaers, B.3
  • 65
    • 42549171556 scopus 로고    scopus 로고
    • The Songbird Neurogenomics (SoNG) Initiative: Community-based tools and strategies for study of brain gene function and evolution
    • doi:10.1186/1471- 2164-9-131
    • Replogle K et al. 2008 The Songbird Neurogenomics (SoNG) Initiative: community-based tools and strategies for study of brain gene function and evolution. BMC Genom. 9, 131. (doi:10.1186/1471- 2164-9-131)
    • (2008) BMC Genom. , vol.9 , Issue.131
    • Replogle, K.1
  • 66
    • 70350469047 scopus 로고    scopus 로고
    • A comparison of reptilian and avian olfactory receptor gene repertoires: Speciesspecific expansion of group gamma genes in birds
    • doi:10.1186/1471- 2164-10-446
    • Steiger SS, Kuryshev VY, Stensmyr MC, Kempenaers B, Mueller JC. 2009 A comparison of reptilian and avian olfactory receptor gene repertoires: speciesspecific expansion of group gamma genes in birds. BMC Genom. 10, 446. (doi:10.1186/1471- 2164-10-446)
    • (2009) BMC Genom. , vol.10 , Issue.446
    • Steiger, S.S.1    Kuryshev, V.Y.2    Stensmyr, M.C.3    Kempenaers, B.4    Mueller, J.C.5
  • 67
    • 33845628839 scopus 로고    scopus 로고
    • What is immune privilege (not)?
    • DOI 10.1016/j.it.2006.11.004, PII S1471490606003267
    • Galea I, Bechmann I, Perry VH. 2007 What is immune privilege (not)? Trends Immunol. 28, 12-18. (doi:10.1016/j.it.2006.11.004). (Pubitemid 44960159)
    • (2007) Trends in Immunology , vol.28 , Issue.1 , pp. 12-18
    • Galea, I.1    Bechmann, I.2    Perry, V.H.3
  • 68
    • 70349792000 scopus 로고    scopus 로고
    • MHC class I: An unexpected role in neuronal plasticity
    • doi:10. 1016/j.neuron.2009.09.044
    • Shatz CJ. 2009 MHC class I: an unexpected role in neuronal plasticity. Neuron 64, 40-45. (doi:10. 1016/j.neuron.2009.09.044)
    • (2009) Neuron , vol.64 , pp. 40-45
    • Shatz, C.J.1
  • 69
    • 77950522488 scopus 로고    scopus 로고
    • Gene duplication and fragmentation in the zebra finch major histocompatibility complex
    • doi:10. 1186/1741-7007-8-29
    • Balakrishnan CN et al. 2010 Gene duplication and fragmentation in the zebra finch major histocompatibility complex. BMC Biol. 8, 29. (doi:10. 1186/1741-7007-8-29)
    • (2010) BMC Biol. , vol.8 , pp. 29
    • Balakrishnan, C.N.1
  • 70
    • 3042841709 scopus 로고    scopus 로고
    • Immune signalling in neural development, synaptic plasticity and disease
    • Boulanger LM, Shatz CJ. 2004 Immune signalling in neural development, synaptic plasticity and disease. Nat. Rev. Neurosci. 5, 521-531. (doi:10.1038/ nrn1428) (Pubitemid 38868548)
    • (2004) Nature Reviews Neuroscience , vol.5 , Issue.7 , pp. 521-531
    • Boulanger, L.M.1    Shatz, C.J.2
  • 72
    • 62449120610 scopus 로고    scopus 로고
    • Nucleotide variation, linkage disequilibrium and founderfacilitated speciation in wild populations of the zebra finch (Taeniopygia guttata)
    • doi:10.1534/genetics.108.094250
    • Balakrishnan CN, Edwards SV. 2009 Nucleotide variation, linkage disequilibrium and founderfacilitated speciation in wild populations of the zebra finch (Taeniopygia guttata). Genetics 181, 645-660. (doi:10.1534/genetics. 108.094250)
    • (2009) Genetics , vol.181 , pp. 645-660
    • Balakrishnan, C.N.1    Edwards, S.V.2
  • 75
    • 77249176571 scopus 로고    scopus 로고
    • Faster-Z evolution is predominantly due to genetic drift
    • doi:10.1093/molbev/msp282)
    • Mank JE, Nam K, Ellegren H. 2010 Faster-Z evolution is predominantly due to genetic drift. Mol. Biol. Evol. 27, 661-670. (doi:10.1093/molbev/msp282).
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 661-670
    • Mank, J.E.1    Nam, K.2    Ellegren, H.3
  • 76
    • 2942538192 scopus 로고    scopus 로고
    • Reduced variation on the chicken Z chromosome
    • DOI 10.1534/genetics.167.1.377
    • Sundstrom H, Webster MT, Ellegren H. 2004 Reduced variation on the chicken Z chromosome. Genetics 167, 377-385. (doi:10.1534/genetics. 167.1.377). (Pubitemid 38736395)
    • (2004) Genetics , vol.167 , Issue.1 , pp. 377-385
    • Sundstrom, H.1    Webster, M.T.2    Ellegren, H.3
  • 78
    • 20444430245 scopus 로고    scopus 로고
    • A scan for positively selected genes in the genomes of humans and chimpanzees
    • doi:10.1371/journal. pbio.0030170
    • Nielsen R et al. 2005 A scan for positively selected genes in the genomes of humans and chimpanzees. PLoS Biol. 3, 976-985. (doi:10.1371/journal. pbio.0030170)
    • (2005) PLoS Biol. , vol.3 , pp. 976-985
    • Nielsen, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.