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Volumn 10, Issue 1, 2010, Pages

Next generation sequencing and analysis of a conserved transcriptome of New Zealand's kiwi

Author keywords

[No Author keywords available]

Indexed keywords

BIRD; COST-BENEFIT ANALYSIS; DIVERGENCE; EMBRYO; ENDANGERED SPECIES; EVOLUTIONARY BIOLOGY; FLIGHTLESSNESS; GENE EXPRESSION; GENETIC ANALYSIS; MOLECULAR ANALYSIS; MUTATION; NATURAL SELECTION;

EID: 78650039219     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-10-387     Document Type: Article
Times cited : (13)

References (35)
  • 3
    • 52949096084 scopus 로고    scopus 로고
    • Next-generation DNA sequencing methods
    • 10.1146/annurev.genom.9.081307.164359. 18576944
    • Next-generation DNA sequencing methods. ER Mardis, Annu Rev Genomics Hum Genet 2008 9 387 402 10.1146/annurev.genom.9.081307.164359 18576944
    • (2008) Annu Rev Genomics Hum Genet , vol.9 , pp. 387-402
    • Mardis, E.R.1
  • 4
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • 10.1038/nbt1486. 18846087
    • Next-generation DNA sequencing. J Shendure HL Ji, Nat Biotechnol 2008 26 1135 1145 10.1038/nbt1486 18846087
    • (2008) Nat Biotechnol , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.L.2
  • 8
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • 10.1101/gr.074492.107. 18349386
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. DR Zerbino E Birney, Genome Res 2008 18 821 829 10.1101/gr.074492.107 18349386
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 11
    • 2942526369 scopus 로고    scopus 로고
    • Male-biased mutation rate and divergence in autosomal, Z-linked and W-linked introns of chicken and turkey
    • 10.1093/molbev/msh157. 15140948
    • Male-biased mutation rate and divergence in autosomal, Z-linked and W-linked introns of chicken and turkey. E Axelsson NGC Smith H Sundstrom S Berlin H Ellegren, Mol Biol Evol 2004 21 1538 1547 10.1093/molbev/msh157 15140948
    • (2004) Mol Biol Evol , vol.21 , pp. 1538-1547
    • Axelsson, E.1    Smith, N.G.C.2    Sundstrom, H.3    Berlin, S.4    Ellegren, H.5
  • 12
    • 12744271852 scopus 로고    scopus 로고
    • Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes
    • 10.1101/gr.3021305. 15590944
    • Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes. E Axelsson MT Webster NGC Smith DW Burt H Ellegren, Genome Res 2005 15 120 125 10.1101/gr.3021305 15590944
    • (2005) Genome Res , vol.15 , pp. 120-125
    • Axelsson, E.1    Webster, M.T.2    Smith, N.G.C.3    Burt, D.W.4    Ellegren, H.5
  • 14
    • 65349138349 scopus 로고    scopus 로고
    • Quantification of Adaptive Evolution of Genes Expressed in Avian Brain and the Population Size Effect on the Efficacy of Selection
    • 10.1093/molbev/msp019. 19188264
    • Quantification of Adaptive Evolution of Genes Expressed in Avian Brain and the Population Size Effect on the Efficacy of Selection. E Axelsson H Ellegren, Mol Biol Evol 2009 26 1073 1079 10.1093/molbev/msp019 19188264
    • (2009) Mol Biol Evol , vol.26 , pp. 1073-1079
    • Axelsson, E.1    Ellegren, H.2
  • 15
    • 44849107389 scopus 로고    scopus 로고
    • Natural selection in avian protein-coding genes expressed in brain
    • 10.1111/j.1365-294X.2008.03795.x. 18482257
    • Natural selection in avian protein-coding genes expressed in brain. E Axelsson L Hultin-Rosenberg M Brandstrom M Zwahlen DF Clayton H Ellegren, Mol Ecol 2008 17 3008 3017 10.1111/j.1365-294X.2008.03795.x 18482257
    • (2008) Mol Ecol , vol.17 , pp. 3008-3017
    • Axelsson, E.1    Hultin-Rosenberg, L.2    Brandstrom, M.3    Zwahlen, M.4    Clayton, D.F.5    Ellegren, H.6
  • 16
    • 77950535845 scopus 로고    scopus 로고
    • Digital gene expression analysis of the zebra finch genome
    • 10.1186/1471-2164-11-219. 20359325
    • Digital gene expression analysis of the zebra finch genome. R Ekblom CN Balakrishnan T Burke J Slate, BMC Genomics 2010 11 219 10.1186/1471-2164-11-219 20359325
    • (2010) BMC Genomics , vol.11 , pp. 219
    • Ekblom, R.1    Balakrishnan, C.N.2    Burke, T.3    Slate, J.4
  • 18
    • 60149098267 scopus 로고    scopus 로고
    • SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses
    • 10.1093/bioinformatics/btp011. 19129211
    • SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses. MS Barker KM Dlugosch ACC Reddy SN Amyotte LH Rieseberg, Bioinformatics 2009 25 535 536 10.1093/bioinformatics/btp011 19129211
    • (2009) Bioinformatics , vol.25 , pp. 535-536
    • Barker, M.S.1    Dlugosch, K.M.2    Reddy, A.C.C.3    Amyotte, S.N.4    Rieseberg, L.H.5
  • 20
    • 0032580152 scopus 로고    scopus 로고
    • A molecular timescale for vertebrate evolution
    • 10.1038/31927. 9582070
    • A molecular timescale for vertebrate evolution. S Kumar SB Hedges, Nature 1998 392 917 920 10.1038/31927 9582070
    • (1998) Nature , vol.392 , pp. 917-920
    • Kumar, S.1    Hedges, S.B.2
  • 21
    • 41049092682 scopus 로고    scopus 로고
    • Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages
    • 18226223
    • Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages. JW Brown JS Rest J Garcia-Moreno MD Sorenson DP Mindell, BMC Biol 2008 6 6 18226223
    • (2008) BMC Biol , vol.6 , pp. 6
    • Brown, J.W.1    Rest, J.S.2    Garcia-Moreno, J.3    Sorenson, M.D.4    Mindell, D.P.5
  • 22
    • 33747179098 scopus 로고    scopus 로고
    • A mitogenomic timescale for birds detects variable phylogenetic rates of molecular evolution and refutes the standard molecular clock
    • 10.1093/molbev/msl038. 16774978
    • A mitogenomic timescale for birds detects variable phylogenetic rates of molecular evolution and refutes the standard molecular clock. SL Pereira AJ Baker, Mol Biol Evol 2006 23 1731 1740 10.1093/molbev/msl038 16774978
    • (2006) Mol Biol Evol , vol.23 , pp. 1731-1740
    • Pereira, S.L.1    Baker, A.J.2
  • 23
    • 33845883023 scopus 로고    scopus 로고
    • Paleontological evidence to date the tree of life
    • 10.1093/molbev/msl150. 17047029
    • Paleontological evidence to date the tree of life. MJ Benton PC Donoghue, Mol Biol Evol 2007 24 26 53 10.1093/molbev/msl150 17047029
    • (2007) Mol Biol Evol , vol.24 , pp. 26-53
    • Benton, M.J.1    Donoghue, P.C.2
  • 24
    • 0034978556 scopus 로고    scopus 로고
    • Highly expressed genes in yeast evolve slowly
    • 11430355
    • Highly expressed genes in yeast evolve slowly. C Pal B Papp LD Hurst, Genetics 2001 158 927 931 11430355
    • (2001) Genetics , vol.158 , pp. 927-931
    • Pal, C.1    Papp, B.2    Hurst, L.D.3
  • 25
    • 5044252972 scopus 로고    scopus 로고
    • Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome
    • 10.1534/genetics.104.028944. 15454550
    • Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome. S Subramanian S Kumar, Genetics 2004 168 373 381 10.1534/genetics.104.028944 15454550
    • (2004) Genetics , vol.168 , pp. 373-381
    • Subramanian, S.1    Kumar, S.2
  • 26
    • 45849138208 scopus 로고    scopus 로고
    • Nearly neutrality and the evolution of codon usage bias in eukaryotic genomes
    • 10.1534/genetics.107.086405. 18430960
    • Nearly neutrality and the evolution of codon usage bias in eukaryotic genomes. S Subramanian, Genetics 2008 178 2429 2432 10.1534/genetics.107.086405 18430960
    • (2008) Genetics , vol.178 , pp. 2429-2432
    • Subramanian, S.1
  • 27
    • 1942454202 scopus 로고    scopus 로고
    • Molecular timescales and the fossil record: A paleontological perspective
    • 10.1016/j.tig.2004.03.007. 15109777
    • Molecular timescales and the fossil record: a paleontological perspective. RR Reisz J Muller, Trends Genet 2004 20 237 241 10.1016/j.tig.2004.03.007 15109777
    • (2004) Trends Genet , vol.20 , pp. 237-241
    • Reisz, R.R.1    Muller, J.2
  • 30
    • 0028247213 scopus 로고
    • Hovergen - A Database of Homologous Vertebrate Genes
    • 10.1093/nar/22.12.2360. 8036164
    • Hovergen - a Database of Homologous Vertebrate Genes. L Duret D Mouchiroud M Gouy, Nucleic Acids Res 1994 22 2360 2365 10.1093/nar/22.12.2360 8036164
    • (1994) Nucleic Acids Res , vol.22 , pp. 2360-2365
    • Duret, L.1    Mouchiroud, D.2    Gouy, M.3
  • 31
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • 10.1093/molbev/msm088. 17483113
    • PAML 4: Phylogenetic analysis by maximum likelihood. ZH Yang, Mol Biol Evol 2007 24 1586 1591 10.1093/molbev/msm088 17483113
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.H.1
  • 34
    • 0036803223 scopus 로고    scopus 로고
    • Divergence time and evolutionary rate estimation with multilocus data
    • 10.1080/10635150290102456. 12396584
    • Divergence time and evolutionary rate estimation with multilocus data. JL Thorne H Kishino, Syst Biol 2002 51 689 702 10.1080/10635150290102456 12396584
    • (2002) Syst Biol , vol.51 , pp. 689-702
    • Thorne, J.L.1    Kishino, H.2
  • 35
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • 10.1186/1471-2148-7-214. 17996036
    • BEAST: Bayesian evolutionary analysis by sampling trees. AJ Drummond A Rambaut, BMC Evol Biol 2007 7 214 10.1186/1471-2148-7-214 17996036
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.