Evolution of cave Axiokebuita and Speleobregma (Scalibregmatidae, Annelida)

Zoologica Scripta

Volumn 42, Issue 6, 2013, Pages 623-636

  Martínez, Alejandro ^a   Di Domenico, Maikon ^b   Worsaae, Katrine ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b UNIVERSITY OF CAMPINAS   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

ANNELIDA; AXIOKEBUITA; CAVERNICOLA; PYGIDIUM; SCALIBREGMATIDAE;

EID: 84885476968     PISSN: 03003256     EISSN: 14636409     Source Type: Journal    
DOI: 10.1111/zsc.12024     Document Type: Article

References (68)

1. Álvarez, F., Martínez, A., Núñez, L. & Núñez, J. (2005). Sobre la presencia en Canarias de varias especies de braquiópodos (Brachiopoda: Rhynconellata) en cuevas y cornisas submarinas. Vieraea, 33, 261-279.
2. Amoureux, L., Josef, G. & O'Connor, B. (1980). Annélides polychètes de l'éponge Fasciospongia cavernosa Schmidt. Cahiers de Biologie Marine, 21, 387-392.
3. Andres, H. G. (1975). Nicippe buchi, sp. N., ein pardaliscide aus einem lavatunnel auf lanzarote (amphipoda, crustacea). Mitteilungen Hamburgisches Zoologisches Museum und Institut, 72, 91-95.
4. Bear, J. (1988). Dynamic Fluids in Porous Media. New York: Elsevier. 784 p.
5. Bertelsen, R. D. (1986). Speleobregma lanzaroteum, a new genus and species of Scalibregmatidae (Polychaeta) from a marine cave in the Canary Islands. Proceedings of the Biological Society of Washington, 99, 375-379.
6. Bertelsen, R. D. & Weston, D. P. (1980). A new species of Sclerobregma (Polychaeta: Scalibregmatidae) from off the southeastern United States. Proceedings of the Biological Society of Washington, 93, 708-713.
7. Blake, J. A. (1981). The Scalibregmatidae (Annelida: Polychaeta) from South America and Antarctica collected chiefly during the cruises of the R/V Anton Brun, R/V Hero and USNS Eltanin. Proceedings of the Biological Society of Washington, 94, 1131-1162.
8. Bleidorn, C. (2005). Phylogenetic relationships and evolution of Orbiniidae (Annelida, Polychaeta) based on molecular data. Zoological Journal of the Linnean Society, 144, 59-73.
9. Bleidorn, C., Vogt, L. & Bartolomaeus, T. (2003). New insights into polychaete phylogeny (Annelida) inferred from 18S rDNA sequences. Molecular Phylogenetics and Evolution, 29, 279-288.
10. Buchanan, J. B. (1984) Sediment analysis. In. N. A. Holme & A. D. McIntyre (Eds) Methods for the Study the Marine Benthos. Vol. 16. (pp. 41-65). London: Blackwell Scientific Publications.
11. Camargo, M. G. (2006). Sysgran: um sistema de código aberto para análises granulométricas do sedimento. Revista Brasileira de Geociências, 345, 345-352.
12. Carracedo, J. C., Singer, B., Jicha, B., Guillou, H., Rodríguez Badiola, E., Meco, J., Pérez Torrado, F. J., Gimeno, D., Socorro, S. & Láinez, A. (2003). La erupción y el tubo volcánico del Volcán Corona (Lanzarote, Islas Canarias). Estudios Geológicos, 59, 277-302.
13. Castresana, J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution, 17, 540-552.
14. Edgar, R. C. (2004a). MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics, 5, 113.
15. Edgar, R. C. (2004b). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792-1797.
16. Elder, H. Y. (1972). Connective tissues and body wall structure, of the polychaete Polyphysia crassa (Lipobranchius jeffreysii) and their significance. Journal of the Marine Biological Association of the United Kingdom, 52, 747-764.
17. Elder, H. Y. (1973). Direct peristaltic progression and the functional significance of the dermal connective tissues during burrowing in the polychaete Polyphysia crassa (Ørsted). Journal of Experimental Biology, 58, 637-655.
18. Fauchald, K. & Jumars, P. A. (1979). The diet of worms: a study of polychaete feeding guilds. Oceanography and Marina Biology Annual Reviews, 17, 193-284.
19. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 78, 3-791.
20. Fisher, A. T. (1998). Permeability within basaltic oceanic crust. Review of Geophysics, 36, 143-182.
21. Goldman, N., Anderson, J. P. & Rodrigo, A. G. (2000). Likelihood-Based Tests of Topologies in Phylogenetics. Systematic Biology, 49, 652-670.
22. Hart, C. W. J., Manning, R. B. & Iliffe, T. M. (1985). The fauna of Atlantic marine caves: evidence of dispersal by sea floor spreading while maintaining ties to deep water. Proceedings of Biological Society of Washington, 98, 288-292.
23. Hartman, O. (1963). Submarine canyons of southern California. Part III. Systematics: Polychaetes. Allan Hancock Foundation Pacific Expedition Publication, 27, 1-93.
24. Hartman, O. (1967). Benthic zonation in antarctica, as displayed by marine annelids (polychaeta) based on published and new records, from intertidal to hadal depths. Proceedings of the Symposium on Pacific-Antarctic Sciences - Jare Scientific reports Special Issue, 1, 192-204.
25. Hartman, O. (1978). Polychaeta from the Weddell Sea Quadrant, Antarctica. Antarctic Research Series, 26, 125-217.
26. Higgins, R. P. & Thiel, H. (1988). Introduction to the Study of Meiofauna. 2nd edn. Washington: Smithsonian Institution Press.
27. Huelsenbeck, J. P. & Ronquist, F. (2001). MrBayes: bayesian inference of phylogeny. Bioinformatics, 17, 754-755.
28. Iliffe, T. M. (1990). Crevicular dispersal of marine faunas. Memoires de Biospéleogie, 17, 93-96.
29. Iliffe, T. M., Wilkens, H., Parzefall, J. & Williams, D. (1984). Marine lava cave fauna: composition, biogeography and origins. Science, 225, 309-311.
30. Iliffe, T. M., Parzefall, J. & Wilkens, H. (2000). Ecology and species distribution of the Monte Corona lava tunnel on Lanzarote (Canary Islands). In H. Wilkens, D. C. Culver & W. F. Humphreys (Eds) Subterranean Ecosystems. Ecosystems of the World (pp. 633-644). Amsterdam: Elsevier.
31. Kishino, H. & Hasegawa, M. (1989). Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea. Journal of Molecular Evolution, 29, 170-179.
32. Kudenov, J. D. (1985). Four new species of Scalibregmatidae (Polychaeta) from the Gulf of Mexico, with comments on the familial placement of Mucibregma Fauchald and Hancock, 1981. Proceedings of the Biological Society of Washington, 98, 332-340.
33. Kudenov, J. D. & Blake, J. A. (1978). A review of the genera and species of the Scalibregmidae (Polychaeta) with descriptions of one new genus and three new species from Australia. Journal of Natural History, 12, 427-444.
34. Mackie, A. (1991). Scalibregma celticum new species (Polychaeta: Scalibregmatidae) from Europe, with a redescription of Scalibregma inflatum Rathke, 1843 and comments on the genus Sclerobregma Hartman, 1965. Bulletin of Marine Science, 48, 268-276.
35. Malmgren, A. J. (1867). Annulata polychaeta Spetsbergiæ, Grönlandiæ, Islandiæ et Scandinaviæ hactenus cognita. Öfversigt af K. Vetenskapsakademiens förhandlingar, 24, 127-235.
36. Martínez, A., Núñez, L., Monterroso, O. & Núñez, J. (2004). Tanatocenosis de moluscos gasterópodos en sedimentos de una cueva submarina de la costa oeste de Tenerife (Islas Canarias). Revista de la Academia Canaria de Ciencias, 16, 161-177.
37. Martínez, A., Palmero, A. M., Brito, M.d. C., Núñez, J. & Worsaae, K. (2009). Anchialine fauna of the Corona lava tube (Lanzarote, Canary Islands): diversity, endemism and distribution. Marine Biodiversity, 39, 169-187.
38. McCammon, R. B. (1962). Efficiencies of percentile measures for describing the mean size and sorting of sedimentary particles. The Journal of Geology, 70, 453-465.
39. Miller, M. A., Pfeiffer, W., Schwartz, T. (2010). Creating the CIPRES Science Gateway for Inference of Large Phylogenetic Trees. New Orleans, LA: Proceedings of the Gateway Computing Environments Workshop (GCE).
40. Núñez, J., Ocaña, Ó. & Brito, M. C. (1997). Two new species (Polychaeta: Fauveliopsidae and Nerillidae) and other polychaetes from the marine lagoon cave of Jameos del Agua, Lanzarote (Canary Islands). Bulletin of Marine Science, 60, 252-260.
41. Parapar, J., Gambi, M. C. & Rouse, G. (2011). A revision of the deep-sea genus Axiokebuita Pocklingon and Fournier, 1987 (Annelida: Scalibregmatidae). Italian Journal of Zoology, 78, 148-162.
42. Paul, C., Halanych, K. M., Tiedemann, R. & Bleidorn, C. (2010). Molecules reject an opheliid affinity for Travisia (Annelida). Systematic and Biodiversity, 8, 507-512.
43. Persson, J. & Pleijel, F. (2005). On the phylogenetic relationships of Axiokebuita, Travisia and Scalibregmatidae (Polychaeta). Zootaxa, 998, 1-14.
44. Pettibone, M. H. (1976). Revision of the genus Macellicephala Mclntosh and the subfamily Macellicephalinae Hartmann-Schroder (Polychaeta: Polynoidae). Smithsonian Contributions to Zoology, 229, 1-71.
45. Pettibone, M. H. (1985). Polychaete worms from a cave in the Bahamas and from experimental wood panels in deep water of the North Atlantic (Polynoidae, Macellicephalinae, Harmothoinae). Proceedings of the Biological Society of Washington, 98, 127-149.
46. Pocklington, P. & Fournier, J. A. (1987). Axiokebuita millsi, new genus, new species, (Polychaeta: Scalibregmatidae) from eastern Canada. Bulletin of the Biological Society of Washington, 7, 108-113.
47. Posada, D. (2008). jModelTest: Phylogenetic Model Averaging. Molecular Biology and Evolution, 25, 1253-1256.
48. Rambaut, A. (2010). FigTree 1.3.1. Available via http://tree.bio.ed.ac.uk/software/figtree/.
49. Rambaut, A. & Drummond, A. J. (2007). Tracer v1.4. Available via http://tree.bio.ed.ac.uk/software/tracer/.
50. Remy, J. P. (1973). Measurement of small permeabilities in the laboratory. Geotechnique, 23, 454-458.
51. Rouse, G. W. & Fauchald, K. (1997). Cladistics and polychaetes. Zoologica Scripta, 26, 139-204.
52. Rouse, G. W. & Pleijel, F. (2001). Polychaetes. Oxford: Oxford University Press. 354 p.
53. Saar, M. O. & Manga, M. (1999). Permeability-Porosity relationship in vesicular basalts. Geophysical Research Letters, 26, 111-114.
54. San Martín, G., López, E. & Núñez, J. (1999). Two new species of the genus Pisione Grube, 1857 from Cuba and the Canary Islands. Ophelia, 51, 29-38.
55. Schmidt, H. A., Strimmer, K., Vingron, M. & von Haeseler, A. (2002). TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics, 18, 502-504.
56. Shimodaira, H. (2002). An approximately unbiased test of phylogenetic tree selection. Systematic Biology, 51, 492-508.
57. Shimodaira, H. & Hasegawa, M. (1999). Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution, 16, 1114-1116.
58. Shimodaira, H. & Hasegawa, M. (2001). CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics, 17, 1246-1247.
59. Stamatakis, A. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688-2690.
60. Stamatakis, A., Hoover, P. & Rougemont, J. (2008). A rapid bootstrap algorithm for the RAxML Web Servers. Systematic Biology, 57, 758-771.
61. Strimmer, K. & Rambaut, A. (2002). Inferring confidence sets of possibly misspecified gene trees. Proceedings of the Royal Society of London. Series B: Biological Sciences, 269, 137-142.
62. Struck, T. H., Schult, N., Kusen, T., Hickman, E., Bleidorn, C., McHugh, D. & Halanych, K. M. (2007). Annelid phylogeny and the status of Sipuncula and Echiura. BMC Evolutionary Biology, 7, 57.
63. Vaidya, G., Lohman, D. J. & Meier, R. (2011). SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information. Cladistics, 27, 171-180.
64. Wentworth, C. K. (1922). A scale of grade and class terms for clastic sediments. Journal of Geology, 30, 377-392.
65. Wilkens, H., Iliffe, T. M., Oromí, P., Martínez, A., Tysall, T. N. & Koenemann, S. (2009). The Corona lava tube, Lanzarote: geology, habitat diversity and biogeography. Marine Biodiversity, 39, 155-167.
66. Xia, X. & Lemey, P. (2009). Assessing substitution saturation with dambe. The Phylogenetic Handbook, 61, 1-626.
67. Xia, X. & Xie, Z. (2001). Dambe: software package for data analysis in molecular biology and evolution. Journal of Heredity, 92, 371-373.
68. Xia, X., Xie, Z., Salemi, M., Chen, L. & Wang, Y. (2003). An index of substitution saturation and its application. Molecular Phylogenetics and Evolution, 26, 1-7.