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Volumn 70, Issue 1, 2014, Pages 137-151

Hidden diversity in the Andes: Comparison of species delimitation methods in montane marsupials

Author keywords

Anonymous loci; Cryptic species; Didelphidae; Multilocus power analysis; Species delimitation; Thylamys

Indexed keywords

ANDINOMYS EDAX; DIDELPHIDAE; MARMOSA; METATHERIA; THYLAMYS; THYLAMYS PALLIDIOR; THYLAMYS SPONSORIUS; THYLAMYS VENUSTUS;

EID: 84885442544     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2013.09.019     Document Type: Article
Times cited : (38)

References (77)
  • 1
    • 0035173201 scopus 로고    scopus 로고
    • Comparative phylogeography as an integrative approach to historical biogeography
    • Arbogast B.S., Kenagy G.J. Comparative phylogeography as an integrative approach to historical biogeography. J. Biogeogr. 2001, 28:819-825.
    • (2001) J. Biogeogr. , vol.28 , pp. 819-825
    • Arbogast, B.S.1    Kenagy, G.J.2
  • 2
    • 1642285792 scopus 로고    scopus 로고
    • The incomplete natural history of mitochondria
    • Ballard J.W.O., Whitlock M.C. The incomplete natural history of mitochondria. Mol. Ecol. 2004, 13:729-744.
    • (2004) Mol. Ecol. , vol.13 , pp. 729-744
    • Ballard, J.W.O.1    Whitlock, M.C.2
  • 3
    • 50049131384 scopus 로고    scopus 로고
    • Cryptic biodiversity in a changing world
    • Beheregaray L.B., Caccone A. Cryptic biodiversity in a changing world. J. Biol. 2007, 6:9.
    • (2007) J. Biol. , vol.6 , pp. 9
    • Beheregaray, L.B.1    Caccone, A.2
  • 4
    • 80054093551 scopus 로고    scopus 로고
    • Developing nuclear sequences for species tree estimation in nonmodel organisms: insights from a case study of Bottae's pocket gopher, Thomomys bottae
    • John Wiley & Sons Inc., Hoboken, NJ, L.L. Knowles, L. Kubatko (Eds.)
    • Belfiore N. Developing nuclear sequences for species tree estimation in nonmodel organisms: insights from a case study of Bottae's pocket gopher, Thomomys bottae. Estimating Species Trees: Practical and Theoretical Aspects 2011, 175-191. John Wiley & Sons Inc., Hoboken, NJ. L.L. Knowles, L. Kubatko (Eds.).
    • (2011) Estimating Species Trees: Practical and Theoretical Aspects , pp. 175-191
    • Belfiore, N.1
  • 6
    • 73449101856 scopus 로고    scopus 로고
    • The utility of molecular hypotheses for uncovering morphological diversity in the Notropis rubellus species complex (Cypriniformes: Cyprinidae)
    • Berendzen P.B., Olson W.M., Barron S.M. The utility of molecular hypotheses for uncovering morphological diversity in the Notropis rubellus species complex (Cypriniformes: Cyprinidae). Copeia 2009, 2009:661-673.
    • (2009) Copeia , vol.2009 , pp. 661-673
    • Berendzen, P.B.1    Olson, W.M.2    Barron, S.M.3
  • 8
    • 65449133181 scopus 로고    scopus 로고
    • Multilocus phylogeography and phylogenetics using sequence-based markers
    • Brito P.H., Edwards S.V. Multilocus phylogeography and phylogenetics using sequence-based markers. Genetica 2008, 135:439-455.
    • (2008) Genetica , vol.135 , pp. 439-455
    • Brito, P.H.1    Edwards, S.V.2
  • 9
    • 33947149502 scopus 로고    scopus 로고
    • Evolution into and out of the Andes: a Bayesian analysis of historical diversification in Thamnophilus antshrikes
    • Brumfield R.T., Edwards S.V. Evolution into and out of the Andes: a Bayesian analysis of historical diversification in Thamnophilus antshrikes. Evolution 2007, 61:346-367.
    • (2007) Evolution , vol.61 , pp. 346-367
    • Brumfield, R.T.1    Edwards, S.V.2
  • 10
    • 84865736697 scopus 로고    scopus 로고
    • Species delimitation with ABC and other coalescent-based methods: a test of accuracy with simulations and an empirical example with lizards of the Liolaemus darwinii complex (Squamata: Liolaemidae)
    • Camargo A., Morando M., Avila L.J., Sites J.W. Species delimitation with ABC and other coalescent-based methods: a test of accuracy with simulations and an empirical example with lizards of the Liolaemus darwinii complex (Squamata: Liolaemidae). Evolution 2012, 66:2834-2849.
    • (2012) Evolution , vol.66 , pp. 2834-2849
    • Camargo, A.1    Morando, M.2    Avila, L.J.3    Sites, J.W.4
  • 11
    • 35948952881 scopus 로고    scopus 로고
    • Gene sampling strategies for multi-locus population estimates of genetic diversity (θ)
    • Carling M.D., Brumfield R.T. Gene sampling strategies for multi-locus population estimates of genetic diversity (θ). PLoS One 2007, 2:e160.
    • (2007) PLoS One , vol.2
    • Carling, M.D.1    Brumfield, R.T.2
  • 12
    • 84864453108 scopus 로고    scopus 로고
    • JModelTest 2: more models, new heuristics and parallel computing
    • Darriba D., Taboada G.L., Doallo R., Posada D. JModelTest 2: more models, new heuristics and parallel computing. Nat. Methods 2012, 9:772.
    • (2012) Nat. Methods , vol.9 , pp. 772
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 13
    • 36249004900 scopus 로고    scopus 로고
    • Species concepts and species delimitation
    • De Queiroz K. Species concepts and species delimitation. Syst. Biol. 2007, 56:879-886.
    • (2007) Syst. Biol. , vol.56 , pp. 879-886
    • De Queiroz, K.1
  • 14
    • 65649131928 scopus 로고    scopus 로고
    • Gene tree discordance, phylogenetic inference and the multispecies coalescent
    • Degnan J.H., Rosenberg N.A. Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol. Evol. 2009, 24:332-340.
    • (2009) Trends Ecol. Evol. , vol.24 , pp. 332-340
    • Degnan, J.H.1    Rosenberg, N.A.2
  • 17
    • 84866236892 scopus 로고    scopus 로고
    • Multi-locus species delimitation in closely related animals and fungi: one marker is not enough
    • Dupuis J.R., Roe A.D., Sperling F.A.H. Multi-locus species delimitation in closely related animals and fungi: one marker is not enough. Mol. Ecol. 2012, 21:4422-4436.
    • (2012) Mol. Ecol. , vol.21 , pp. 4422-4436
    • Dupuis, J.R.1    Roe, A.D.2    Sperling, F.A.H.3
  • 18
    • 0034496840 scopus 로고    scopus 로고
    • Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies
    • Edwards S.V., Beerli P. Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution 2000, 54:1839-1854.
    • (2000) Evolution , vol.54 , pp. 1839-1854
    • Edwards, S.V.1    Beerli, P.2
  • 19
    • 67649637128 scopus 로고    scopus 로고
    • Looking forwards or looking backwards in avian phylogeography? A comment on Zink and Barrowclough 2008
    • Edwards S.V., Bensch S. Looking forwards or looking backwards in avian phylogeography? A comment on Zink and Barrowclough 2008. Mol. Ecol. 2009, 18:2930-2933.
    • (2009) Mol. Ecol. , vol.18 , pp. 2930-2933
    • Edwards, S.V.1    Bensch, S.2
  • 20
    • 79954549463 scopus 로고    scopus 로고
    • SpedeSTEM: a rapid and accurate method for species delimitation
    • Ence D.D., Carstens B.C. SpedeSTEM: a rapid and accurate method for species delimitation. Mol. Ecol. Resour. 2011, 11:473-480.
    • (2011) Mol. Ecol. Resour. , vol.11 , pp. 473-480
    • Ence, D.D.1    Carstens, B.C.2
  • 21
    • 33244495782 scopus 로고    scopus 로고
    • Accuracy of coalescent likelihood estimates: do we need more sites, more sequences, or more loci?
    • Felsenstein J. Accuracy of coalescent likelihood estimates: do we need more sites, more sequences, or more loci?. Mol. Biol. Evol. 2006, 23:691-700.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 691-700
    • Felsenstein, J.1
  • 22
    • 35848964045 scopus 로고    scopus 로고
    • Champuru 1.0: a computer software for unraveling mixtures of two DNA sequences of unequal lengths
    • Flot J.F. Champuru 1.0: a computer software for unraveling mixtures of two DNA sequences of unequal lengths. Mol. Ecol. Notes 2007, 7:974-977.
    • (2007) Mol. Ecol. Notes , vol.7 , pp. 974-977
    • Flot, J.F.1
  • 23
    • 73349093701 scopus 로고    scopus 로고
    • SeqPHASE: a web tool for interconverting PHASE input/output files and FASTA sequence alignments
    • Flot J.F. SeqPHASE: a web tool for interconverting PHASE input/output files and FASTA sequence alignments. Mol. Ecol. Resour. 2010, 10:162-166.
    • (2010) Mol. Ecol. Resour. , vol.10 , pp. 162-166
    • Flot, J.F.1
  • 25
    • 0842322955 scopus 로고    scopus 로고
    • Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA
    • Funk D.J., Omland K.E. Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annu. Rev. Ecol. Evol. Syst. 2003, 34:397-423.
    • (2003) Annu. Rev. Ecol. Evol. Syst. , vol.34 , pp. 397-423
    • Funk, D.J.1    Omland, K.E.2
  • 26
    • 70350771134 scopus 로고    scopus 로고
    • Mitochondrial DNA as a marker of molecular diversity: a reappraisal
    • Galtier N., Nabholz B., Glemin S., Hurst G.D.D. Mitochondrial DNA as a marker of molecular diversity: a reappraisal. Mol. Ecol. 2009, 18:4541-4550.
    • (2009) Mol. Ecol. , vol.18 , pp. 4541-4550
    • Galtier, N.1    Nabholz, B.2    Glemin, S.3    Hurst, G.D.D.4
  • 27
    • 77951536651 scopus 로고    scopus 로고
    • Nuclear gene phylogeography using PHASE: dealing with unresolved genotypes, lost alleles, and systematic bias in parameter estimation
    • Garrick R.C., Sunnucks P., Dyer R.J. Nuclear gene phylogeography using PHASE: dealing with unresolved genotypes, lost alleles, and systematic bias in parameter estimation. BMC Evol. Biol. 2010, 10:118.
    • (2010) BMC Evol. Biol. , vol.10 , pp. 118
    • Garrick, R.C.1    Sunnucks, P.2    Dyer, R.J.3
  • 28
    • 78650578415 scopus 로고    scopus 로고
    • Species limits and phylogenetic relationships in the didelphid marsupial genus Thylamys based on mitochondrial DNA sequences and morphology
    • Giarla T.C., Voss R.S., Jansa S.A. Species limits and phylogenetic relationships in the didelphid marsupial genus Thylamys based on mitochondrial DNA sequences and morphology. Bull. Am. Mus. Nat. Hist. 2010, 1-67.
    • (2010) Bull. Am. Mus. Nat. Hist. , pp. 1-67
    • Giarla, T.C.1    Voss, R.S.2    Jansa, S.A.3
  • 29
    • 19944396462 scopus 로고    scopus 로고
    • Isolating microsatellite DNA loci
    • Glenn T.C., Schable N.A. Isolating microsatellite DNA loci. Methods Enzymol. 2005, 395:202-222.
    • (2005) Methods Enzymol. , vol.395 , pp. 202-222
    • Glenn, T.C.1    Schable, N.A.2
  • 30
    • 0028172141 scopus 로고
    • Direct DNA sequencing of PCR-amplified vector inserts following enzymatic degradation of primer and dNTPs
    • Hanke M., Wink M. Direct DNA sequencing of PCR-amplified vector inserts following enzymatic degradation of primer and dNTPs. BioTechniques 1994, 17:858.
    • (1994) BioTechniques , vol.17 , pp. 858
    • Hanke, M.1    Wink, M.2
  • 31
    • 79953644683 scopus 로고    scopus 로고
    • Progress toward a general species concept
    • Hausdorf B. Progress toward a general species concept. Evolution 2011, 65:923-931.
    • (2011) Evolution , vol.65 , pp. 923-931
    • Hausdorf, B.1
  • 32
    • 77249086587 scopus 로고    scopus 로고
    • Bayesian inference of species trees from multilocus data
    • Heled J., Drummond A.J. Bayesian inference of species trees from multilocus data. Mol. Biol. Evol. 2010, 27:570-580.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 570-580
    • Heled, J.1    Drummond, A.J.2
  • 33
    • 33645076038 scopus 로고    scopus 로고
    • Comparative phylogeographic summary statistics for testing simultaneous vicariance
    • Hickerson M.J., Dolman G., Moritz C. Comparative phylogeographic summary statistics for testing simultaneous vicariance. Mol. Ecol. 2006, 15:209-223.
    • (2006) Mol. Ecol. , vol.15 , pp. 209-223
    • Hickerson, M.J.1    Dolman, G.2    Moritz, C.3
  • 34
    • 78049390225 scopus 로고    scopus 로고
    • Rapid and accurate species tree estimation for phylogeographic investigations using replicated subsampling
    • Hird S., Kubatko L., Carstens B. Rapid and accurate species tree estimation for phylogeographic investigations using replicated subsampling. Mol. Phylogenet. Evol. 2010, 57:888-898.
    • (2010) Mol. Phylogenet. Evol. , vol.57 , pp. 888-898
    • Hird, S.1    Kubatko, L.2    Carstens, B.3
  • 35
    • 0036695118 scopus 로고    scopus 로고
    • Mathematical consequences of the genealogical species concept
    • Hudson R.R., Coyne J.A. Mathematical consequences of the genealogical species concept. Evolution 2002, 56:1557-1565.
    • (2002) Evolution , vol.56 , pp. 1557-1565
    • Hudson, R.R.1    Coyne, J.A.2
  • 36
    • 84888198801 scopus 로고    scopus 로고
    • The early diversification history of didelphid marsupials: a window into South America's "splendid isolation". Evolution (in press).
    • Jansa, S.A., Barker, F.K., Voss, R.S., 2013. The early diversification history of didelphid marsupials: a window into South America's "splendid isolation". Evolution (in press).
    • (2013)
    • Jansa, S.A.1    Barker, F.K.2    Voss, R.S.3
  • 37
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent W.J. BLAT-the BLAST-like alignment tool. Genome Res. 2002, 12:656-664.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 38
    • 33846886943 scopus 로고    scopus 로고
    • Does niche conservatism promote speciation? A case study in North American salamanders
    • Kozak K.H., Wiens J.J. Does niche conservatism promote speciation? A case study in North American salamanders. Evolution 2006, 60:2604-2621.
    • (2006) Evolution , vol.60 , pp. 2604-2621
    • Kozak, K.H.1    Wiens, J.J.2
  • 39
    • 33847302458 scopus 로고    scopus 로고
    • Inconsistency of phylogenetic estimates from concatenated data under coalescence
    • Kubatko L.S., Degnan J.H. Inconsistency of phylogenetic estimates from concatenated data under coalescence. Syst. Biol. 2007, 56:17-24.
    • (2007) Syst. Biol. , vol.56 , pp. 17-24
    • Kubatko, L.S.1    Degnan, J.H.2
  • 40
    • 63549118031 scopus 로고    scopus 로고
    • STEM: species tree estimation using maximum likelihood for gene trees under coalescence
    • Kubatko L.S., Carstens B.C., Knowles L.L. STEM: species tree estimation using maximum likelihood for gene trees under coalescence. Bioinformatics 2009, 25:971-973.
    • (2009) Bioinformatics , vol.25 , pp. 971-973
    • Kubatko, L.S.1    Carstens, B.C.2    Knowles, L.L.3
  • 42
    • 0017144189 scopus 로고
    • Natural selection and random genetic drift in phenotypic evolution
    • Lande R. Natural selection and random genetic drift in phenotypic evolution. Evolution 1976, 30:314-334.
    • (1976) Evolution , vol.30 , pp. 314-334
    • Lande, R.1
  • 43
    • 84861380450 scopus 로고    scopus 로고
    • Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses
    • Lanfear R., Calcott B., Ho S.Y.W., Guindon S. Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol. Biol. Evol. 2012, 29:1695-1701.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 1695-1701
    • Lanfear, R.1    Calcott, B.2    Ho, S.Y.W.3    Guindon, S.4
  • 45
    • 77956935937 scopus 로고    scopus 로고
    • Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus)
    • Leaché A.D., Fujita M.K. Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus). Proc. R. Soc. Lond. B 2010, 277:3071-3077.
    • (2010) Proc. R. Soc. Lond. B , vol.277 , pp. 3071-3077
    • Leaché, A.D.1    Fujita, M.K.2
  • 46
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
    • Librado P., Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 49
    • 78349280787 scopus 로고    scopus 로고
    • Onset of glaciation drove simultaneous vicariant isolation of Alpine insects in New Zealand
    • McCulloch G.A., Wallis G.P., Waters J.M. Onset of glaciation drove simultaneous vicariant isolation of Alpine insects in New Zealand. Evolution 2010, 64:2033-2043.
    • (2010) Evolution , vol.64 , pp. 2033-2043
    • McCulloch, G.A.1    Wallis, G.P.2    Waters, J.M.3
  • 50
    • 0034097468 scopus 로고    scopus 로고
    • TOPAL 2.0: improved detection of mosaic sequences within multiple alignments
    • McGuire G., Wright F. TOPAL 2.0: improved detection of mosaic sequences within multiple alignments. Bioinformatics 2000, 16:130-134.
    • (2000) Bioinformatics , vol.16 , pp. 130-134
    • McGuire, G.1    Wright, F.2
  • 52
    • 58049218990 scopus 로고    scopus 로고
    • TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
    • Milne I., Lindner D., Bayer M., Husmeier D., McGuire G., Marshall D.F., Wright F. TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics 2009, 25:126-127.
    • (2009) Bioinformatics , vol.25 , pp. 126-127
    • Milne, I.1    Lindner, D.2    Bayer, M.3    Husmeier, D.4    McGuire, G.5    Marshall, D.F.6    Wright, F.7
  • 53
    • 0000058501 scopus 로고
    • Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees
    • Moore W.S. Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees. Evolution 1995, 49:718-726.
    • (1995) Evolution , vol.49 , pp. 718-726
    • Moore, W.S.1
  • 54
    • 72049107504 scopus 로고    scopus 로고
    • New heuristic methods for joint species delimitation and species tree inference
    • O'Meara B.C. New heuristic methods for joint species delimitation and species tree inference. Syst. Biol. 2010, 59:59-73.
    • (2010) Syst. Biol. , vol.59 , pp. 59-73
    • O'Meara, B.C.1
  • 55
    • 0029861446 scopus 로고    scopus 로고
    • Optimal sequencing strategies for surveying molecular genetic diversity
    • Pluzhnikov A., Donnelly P. Optimal sequencing strategies for surveying molecular genetic diversity. Genetics 1996, 144:1247-1262.
    • (1996) Genetics , vol.144 , pp. 1247-1262
    • Pluzhnikov, A.1    Donnelly, P.2
  • 57
    • 84888198280 scopus 로고    scopus 로고
    • Tracer v1.5.
    • Rambaut, A., Drummond, A., 2007. Tracer v1.5. <>. http://beast.bio.ed.ac.uk/Tracer.
    • (2007)
    • Rambaut, A.1    Drummond, A.2
  • 58
    • 84866789901 scopus 로고    scopus 로고
    • Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model
    • Reid N.M., Carstens B.C. Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model. BMC Evol. Biol. 2012, 12:196.
    • (2012) BMC Evol. Biol. , vol.12 , pp. 196
    • Reid, N.M.1    Carstens, B.C.2
  • 59
    • 34548770070 scopus 로고    scopus 로고
    • The assembly of montane biotas: linking Andean tectonics and climatic oscillations to independent regimes of diversification in Pionus parrots
    • Ribas C.C., Moyle R.G., Miyaki C.Y., Cracraft J. The assembly of montane biotas: linking Andean tectonics and climatic oscillations to independent regimes of diversification in Pionus parrots. Proc. R. Soc. Lond. B 2007, 274:2399-2408.
    • (2007) Proc. R. Soc. Lond. B , vol.274 , pp. 2399-2408
    • Ribas, C.C.1    Moyle, R.G.2    Miyaki, C.Y.3    Cracraft, J.4
  • 60
    • 36248992880 scopus 로고    scopus 로고
    • Adding more ecology into species delimitation: ecological niche models and phylogeography help define cryptic species in the black salamander (Aneides flavipunctatus)
    • Rissler L.J., Apodaca J.J. Adding more ecology into species delimitation: ecological niche models and phylogeography help define cryptic species in the black salamander (Aneides flavipunctatus). Syst. Biol. 2007, 56:924-942.
    • (2007) Syst. Biol. , vol.56 , pp. 924-942
    • Rissler, L.J.1    Apodaca, J.J.2
  • 61
    • 84866167805 scopus 로고    scopus 로고
    • The effects of sampling on delimiting species from multi-locus sequence data
    • Rittmeyer E.N., Austin C.C. The effects of sampling on delimiting species from multi-locus sequence data. Mol. Phylogenet. Evol. 2012, 65:451-463.
    • (2012) Mol. Phylogenet. Evol. , vol.65 , pp. 451-463
    • Rittmeyer, E.N.1    Austin, C.C.2
  • 62
    • 78650424081 scopus 로고    scopus 로고
    • Multilocus species identification and fungal DNA barcoding: insights from blue stain fungal symbionts of the mountain pine beetle
    • Roe A.D., Rice A.V., Bromilow S.E., Cooke J.E.K., Sperling F.A.H. Multilocus species identification and fungal DNA barcoding: insights from blue stain fungal symbionts of the mountain pine beetle. Mol. Ecol. Resour. 2010, 10:946-959.
    • (2010) Mol. Ecol. Resour. , vol.10 , pp. 946-959
    • Roe, A.D.1    Rice, A.V.2    Bromilow, S.E.3    Cooke, J.E.K.4    Sperling, F.A.H.5
  • 63
    • 0030860350 scopus 로고    scopus 로고
    • Recent diversification in African greenbuls (Pycnonotidae: Andropadus) supports a montane speciation model
    • Roy M.S. Recent diversification in African greenbuls (Pycnonotidae: Andropadus) supports a montane speciation model. Proc. R. Soc. Lond. B 1997, 264:1337-1344.
    • (1997) Proc. R. Soc. Lond. B , vol.264 , pp. 1337-1344
    • Roy, M.S.1
  • 64
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S., Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 2000, 132:365-386.
    • (2000) Methods Mol. Biol. , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 65
    • 83955162898 scopus 로고    scopus 로고
    • Use of allele-specific sequencing primers is an efficient alternative to PCR subcloning of low-copy nuclear genes
    • Scheen A.-C., Pfeil B.E., Petri A., Heidari N., Nylinder S., Oxelman B. Use of allele-specific sequencing primers is an efficient alternative to PCR subcloning of low-copy nuclear genes. Mol. Ecol. Resour. 2012, 12:128-135.
    • (2012) Mol. Ecol. Resour. , vol.12 , pp. 128-135
    • Scheen, A.-C.1    Pfeil, B.E.2    Petri, A.3    Heidari, N.4    Nylinder, S.5    Oxelman, B.6
  • 66
    • 35649007346 scopus 로고    scopus 로고
    • TraceHaplotyper: using direct sequencing to determine the phase of an indel followed by biallelic SNPs
    • Seroussi Y., Seroussi E. TraceHaplotyper: using direct sequencing to determine the phase of an indel followed by biallelic SNPs. BioTechniques 2007, 43:452-456.
    • (2007) BioTechniques , vol.43 , pp. 452-456
    • Seroussi, Y.1    Seroussi, E.2
  • 67
    • 80054073812 scopus 로고    scopus 로고
    • Genotyping HapSTR loci: phase determination from direct sequencing of PCR products
    • Sorenson M.D., DaCosta J.M. Genotyping HapSTR loci: phase determination from direct sequencing of PCR products. Mol. Ecol. Resour. 2011, 11:1068-1075.
    • (2011) Mol. Ecol. Resour. , vol.11 , pp. 1068-1075
    • Sorenson, M.D.1    DaCosta, J.M.2
  • 68
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens M., Smith N.J., Donnelly P. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 2001, 68:978-989.
    • (2001) Am. J. Hum. Genet. , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 69
    • 84888197155 scopus 로고    scopus 로고
    • PAUP*: Phylogenetic Analysis using Parsimony. Version 4.0b. Sinauer Associates, Sunderland (MA).
    • Swofford, D.L., 2002. PAUP*: Phylogenetic Analysis using Parsimony. Version 4.0b. Sinauer Associates, Sunderland (MA).
    • (2002)
    • Swofford, D.L.1
  • 70
    • 84864413626 scopus 로고    scopus 로고
    • The biogeography of mitochondrial and nuclear discordance in animals
    • Toews D.P.L., Brelsford A. The biogeography of mitochondrial and nuclear discordance in animals. Mol. Ecol. 2012, 21:3907-3930.
    • (2012) Mol. Ecol. , vol.21 , pp. 3907-3930
    • Toews, D.P.L.1    Brelsford, A.2
  • 71
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • Watterson G.A. On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 1975, 7:256-276.
    • (1975) Theor. Popul. Biol. , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 72
    • 33745230793 scopus 로고    scopus 로고
    • Divergent timing and patterns of species accumulation in lowland and highland neotropical birds
    • Weir J.T. Divergent timing and patterns of species accumulation in lowland and highland neotropical birds. Evolution 2006, 60:842-855.
    • (2006) Evolution , vol.60 , pp. 842-855
    • Weir, J.T.1
  • 73
    • 30344446365 scopus 로고    scopus 로고
    • Niche conservatism: integrating evolution, ecology, and conservation biology
    • Wiens J.J., Graham C.H. Niche conservatism: integrating evolution, ecology, and conservation biology. Annu. Rev. Ecol. Evol. Syst. 2005, 36:519-539.
    • (2005) Annu. Rev. Ecol. Evol. Syst. , vol.36 , pp. 519-539
    • Wiens, J.J.1    Graham, C.H.2
  • 74
    • 77952703002 scopus 로고    scopus 로고
    • Bayesian species delimitation using multilocus sequence data
    • Yang Z., Rannala B. Bayesian species delimitation using multilocus sequence data. Proc. Natl. Acad. Sci. USA 2010, 107:9264-9269.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 9264-9269
    • Yang, Z.1    Rannala, B.2
  • 75
    • 80054890844 scopus 로고    scopus 로고
    • Evaluation of a Bayesian coalescent method of species delimitation
    • Zhang C., Zhang D.X., Zhu T., Yang Z. Evaluation of a Bayesian coalescent method of species delimitation. Syst. Biol. 2011, 60:747-761.
    • (2011) Syst. Biol. , vol.60 , pp. 747-761
    • Zhang, C.1    Zhang, D.X.2    Zhu, T.3    Yang, Z.4
  • 76
    • 42449136665 scopus 로고    scopus 로고
    • Mitochondrial DNA under siege in avian phylogeography. Mol. Ecol.
    • Zink R.M., Barrowclough G.F. Mitochondrial DNA under siege in avian phylogeography. Mol. Ecol. 2008, 17:2107-2121.
    • (2008) , vol.17 , pp. 2107-2121
    • Zink, R.M.1    Barrowclough, G.F.2
  • 77
    • 84888201845 scopus 로고    scopus 로고
    • Genetic Algorithm Approaches for the Phylogenetic Analysis of Large Biological Sequence Datasets under the Maximum Likelihood Criterion. [PhD Dissertation]. University of Texas at Austin, Austin (TX).
    • Zwickl, D., 2006. Genetic Algorithm Approaches for the Phylogenetic Analysis of Large Biological Sequence Datasets under the Maximum Likelihood Criterion. [PhD Dissertation]. University of Texas at Austin, Austin (TX).
    • (2006)
    • Zwickl, D.1


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