메뉴 건너뛰기




Volumn 277, Issue 1697, 2010, Pages 3071-3077

Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus)

Author keywords

Bayesian inference; Phylogeography; Reversible jump MCMC; Speciation probability

Indexed keywords

AGE STRUCTURE; BAYESIAN ANALYSIS; DATA SET; FOREST ECOSYSTEM; GENETIC ANALYSIS; LIZARD; MARKOV CHAIN; MONTE CARLO ANALYSIS; NUMERICAL MODEL; PHYLOGEOGRAPHY; POPULATION DISTRIBUTION; POPULATION SIZE; SPECIATION (BIOLOGY); SPECIES CONSERVATION; SPECIES DIVERSITY; STATISTICAL ANALYSIS;

EID: 77956935937     PISSN: 09628452     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rspb.2010.0662     Document Type: Conference Paper
Times cited : (486)

References (36)
  • 1
    • 33748632047 scopus 로고    scopus 로고
    • Species: Demarcation and diversity
    • eds A. Purvis, J. L. Gittleman & T. Brooks Cambridge, UK: Cambridge University Press
    • Agapow, M. 2005 Species: demarcation and diversity. In Phy-logeny and Conservation (eds A. Purvis, J. L. Gittleman & T. Brooks), pp. 57-75. Cambridge, UK: Cambridge University Press.
    • (2005) Phylogeny and Conservation , pp. 57-75
    • Agapow, M.1
  • 2
    • 56549090404 scopus 로고    scopus 로고
    • Biogeography and evolution of body size and life history of African frogs: Phylogeny of squeakers (Arthroleptis) and long-fingered frogs (Cardioglossa) estimated from mitochondrial data
    • doi:10.1016/j.ympev.2008.08.015
    • Blackburn, D. C. 2008 Biogeography and evolution of body size and life history of African frogs: phylogeny of squeakers (Arthroleptis) and long-fingered frogs (Cardioglossa) estimated from mitochondrial data. Mol. Phylogenet. Evol. 49, 806-826. (doi:10.1016/j.ympev.2008.08.015)
    • (2008) Mol. Phylogenet. Evol. , vol.49 , pp. 806-826
    • Blackburn, D.C.1
  • 3
    • 4344632365 scopus 로고    scopus 로고
    • Molecular evolution in space and through time: mtDNA phylogeography of the Olive Sunbird (Nectarinia olivacea/obscura) throughout continental Africa
    • DOI 10.1016/j.ympev.2004.04.013, PII S1055790304001423
    • Bowie, R. C. K., Fjeldsa°, J., Hackett, S. J. & Crowe, T. M. 2004 Molecular evolution in space and through time: mtDNA phylogeography of the Olive Sunbird (Nectarinia olivacea/obscura) throughout continental Africa. Mol. Phy-logenet. Evol. 33, 56-74. (doi:10.1016/j.ympev.2004.04. 013) (Pubitemid 39138737)
    • (2004) Molecular Phylogenetics and Evolution , vol.33 , Issue.1 , pp. 56-74
    • Bowie, R.C.K.1    Fjeldsa, J.2    Hackett, S.J.3    Crowe, T.M.4
  • 4
    • 30344466673 scopus 로고    scopus 로고
    • Systematics, biogeogra-phy, and evolution of Hemidactylus geckos (Reptilia: Gekkonidae) elucidated using mitochondrial DNA sequences
    • doi:10. 1016/j.ympev.2005.07.012
    • Carranza, S. & Arnold, E. N. 2006 Systematics, biogeogra-phy, and evolution of Hemidactylus geckos (Reptilia: Gekkonidae) elucidated using mitochondrial DNA sequences. Mol. Phylogenet. Evol. 38, 531-545. (doi:10. 1016/j.ympev.2005.07.012)
    • (2006) Mol. Phylogenet. Evol. , vol.38 , pp. 531-545
    • Carranza, S.1    Arnold, E.N.2
  • 5
    • 34249700809 scopus 로고    scopus 로고
    • Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: An example from melanoplus grasshoppers
    • DOI 10.1080/10635150701405560, PII 778979727
    • Carstens, B. C. & Knowles, L. L. 2007 Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers. Syst. Biol. 56, 400-411. (doi:10.1080/ 10635150701405560) (Pubitemid 46826903)
    • (2007) Systematic Biology , vol.56 , Issue.3 , pp. 400-411
    • Carstens, B.C.1    Knowles, L.L.2
  • 6
    • 0002788119 scopus 로고    scopus 로고
    • The general lineage concept of species, species criteria, and the process of speciation: A conceptual unification and terminological recommendations
    • eds D. J. Howard & S. H. Berlocher Oxford, UK: Oxford University Press
    • de Queiroz, K. 1998 The general lineage concept of species, species criteria, and the process of speciation: a conceptual unification and terminological recommendations. In Endless forms: species and speciation (eds D. J. Howard & S. H. Berlocher), pp. 57-75. Oxford, UK: Oxford University Press.
    • (1998) Endless Forms: Species and Speciation , pp. 57-75
    • De Queiroz, K.1
  • 7
    • 36249004900 scopus 로고    scopus 로고
    • Species concepts and species delimitation
    • DOI 10.1080/10635150701701083, PII 785834893
    • de Queiroz, K. 2007 Species concepts and species delimitation. Syst. Biol. 56, 879-886. (doi:10.1080/ 10635150701701083) (Pubitemid 350129638)
    • (2007) Systematic Biology , vol.56 , Issue.6 , pp. 879-886
    • De Queiroz, K.1
  • 8
    • 0000110034 scopus 로고
    • Mendelian populations and their evolution
    • doi:10.1086/281638
    • Dobzhansky, T. 1950 Mendelian populations and their evolution. Am. Nat. 84, 401-418. (doi:10.1086/281638)
    • (1950) Am. Nat. , vol.84 , pp. 401-418
    • Dobzhansky, T.1
  • 9
    • 0033972680 scopus 로고    scopus 로고
    • Vegetation change in equatorial West Africa: Time-slices for the last 150 ka, Palaeogeogr
    • doi:10. 1016/S0031-0182(99) 00095-4
    • Dupont, L. M., Jahns, S., Marret, F. & Ning, S. 2000 Vegetation change in equatorial West Africa: time-slices for the last 150 ka. Palaeogeogr. Palaeocl 155, 95-122. (doi:10. 1016/S0031-0182(99)00095-4)
    • (2000) Palaeocl , vol.155 , pp. 95-122
    • Dupont, L.M.1    Jahns, S.2    Marret, F.3    Ning, S.4
  • 10
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • DOI 10.1093/nar/gkh340
    • Edgar, R. C. 2004 MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797. (doi:10.1093/nar/gkh340) (Pubitemid 38832724)
    • (2004) Nucleic Acids Research , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 11
    • 77955296794 scopus 로고    scopus 로고
    • Diversification and persistence at the arid-monsoo-nal interface: Australia-wide biogeography of the Bynoe's gecko (Heteronotia binoei; Gekkonidae)
    • doi:10.1111/j.1558-5646.2010.00993.x
    • Fujita, M. K., McGuire, J. A., Donnellan, S. C. & Moritz, C. 2010 Diversification and persistence at the arid-monsoo-nal interface: Australia-wide biogeography of the Bynoe's gecko (Heteronotia binoei; Gekkonidae). Evolution. (doi:10.1111/j.1558-5646.2010.00993.x)
    • (2010) Evolution
    • Fujita, M.K.1    McGuire, J.A.2    Donnellan, S.C.3    Moritz, C.4
  • 12
    • 0002297456 scopus 로고
    • History of climate and forests in tropical Africa during the last 8 million years
    • doi:10.1007/BF00142215
    • Hamilton, A. C. & Taylor, D. 1991 History of climate and forests in tropical Africa during the last 8 million years. Clim. Change 19, 65-78. (doi:10.1007/BF00142215)
    • (1991) Clim. Change , vol.19 , pp. 65-78
    • Hamilton, A.C.1    Taylor, D.2
  • 13
    • 77249086587 scopus 로고    scopus 로고
    • Bayesian inference of species trees from multilocus data
    • doi:10.1093/molbev/msp274
    • Heled, J. & Drummond, A. J. 2010 Bayesian inference of species trees from multilocus data. Mol. Biol. Evol. 27, 570-580. (doi:10.1093/molbev/msp274)
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 570-580
    • Heled, J.1    Drummond, A.J.2
  • 14
    • 73149092620 scopus 로고    scopus 로고
    • On the arbitrary identification of real species
    • eds R. K. Butlin, J. R. Bridle & D. Schluter Cambridge, UK: Cambridge University Press
    • Hey, J. 2009 On the arbitrary identification of real species. In Speciation and patterns of diversity (eds R. K. Butlin, J. R. Bridle & D. Schluter), pp. 15-28. Cambridge, UK: Cambridge University Press.
    • (2009) Speciation and Patterns of Diversity , pp. 15-28
    • Hey, J.1
  • 15
    • 77952297997 scopus 로고    scopus 로고
    • The divergence of Chimpanzee species and subspecies as revealed in multipopulation isolation-with-migration analyses
    • doi:10.1093/molbev/msp298
    • Hey, J. 2010 The divergence of Chimpanzee species and subspecies as revealed in multipopulation isolation-with-migration analyses. Mol. Biol. Evol. 27, 921-933. (doi:10.1093/molbev/msp298)
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 921-933
    • Hey, J.1
  • 16
    • 34249066206 scopus 로고    scopus 로고
    • Inference of population structure under a dirichlet process model
    • DOI 10.1534/genetics.106.061317
    • Huelsenbeck, J. P. & Andolfatto, P. 2007 Inference of population structure under a Dirichlet process model. Genetics 175, 1787-1802. (doi:10.1534/genetics.106.061317) (Pubitemid 46789963)
    • (2007) Genetics , vol.175 , Issue.4 , pp. 1787-1802
    • Huelsenbeck, J.P.1    Andolfatto, P.2
  • 17
    • 34447620474 scopus 로고    scopus 로고
    • Delimiting species without monophyletic sene trees
    • DOI 10.1080/10635150701701091, PII 785835042
    • Knowles, L. L. & Carstens, B. C. 2007 Delimiting species without monophyletic gene trees. Syst. Biol. 56, 887-895. (doi:10.1080/ 10635150701701091) (Pubitemid 350129639)
    • (2007) Systematic Biology , vol.56 , Issue.6 , pp. 887-895
    • Knowles, L.L.1    Carstens, B.C.2
  • 19
    • 68149112607 scopus 로고    scopus 로고
    • Quantifying ecological, morphological, and genetic variation to delimit species in the coast horned lizard species complex (Phry-nosoma)
    • doi:10.1073/pnas.0906380106
    • Leaché, A. D., Koo, M. S., Spencer, C. L., Papenfuss, T. J., Fisher, R. N. & McGuire, J. A. 2009 Quantifying ecological, morphological, and genetic variation to delimit species in the coast horned lizard species complex (Phry-nosoma). Proc. Natl Acad. Sci. USA 106, 12 418-12 423. (doi:10.1073/pnas.0906380106)
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 12418-12423
    • Leaché, A.D.1    Koo, M.S.2    Spencer, C.L.3    Papenfuss, T.J.4    Fisher, R.N.5    McGuire, J.A.6
  • 20
    • 0028193444 scopus 로고
    • Isotopic variations with distance and time in the volcanic islands of the Cameroon line: Evidence for a mantle, plume origin
    • doi:10.1016/0012-821X(94)90262-3
    • Lee, D.-C., Halliday, A. N., Fitton, J. G. & Poli, G. 1994 Isotopic variations with distance and time in the volcanic islands of the Cameroon line: evidence for a mantle plume origin. Earth Planet. Sci. Lett. 123, 119-138. (doi:10.1016/0012-821X(94)90262-3)
    • (1994) Earth Planet. Sci. Lett. , vol.123 , pp. 119-138
    • Lee, D.-C.1    Halliday, A.N.2    Fitton, J.G.3    Poli, G.4
  • 21
    • 0002616788 scopus 로고
    • Revision of the African lizards of the family Gekkonidae
    • Loveridge, A. 1947 Revision of the African lizards of the family Gekkonidae. Bull. Mus. Comp. Zool. 98, 1-469.
    • (1947) Bull. Mus. Comp. Zool. , vol.98 , pp. 1-469
    • Loveridge, A.1
  • 22
    • 76849094299 scopus 로고    scopus 로고
    • Are lowland rainforests really evolutionary museums? Phylogeography of the green hylia (Hylia prasina) in the Afrotropics
    • doi:10.1016/j.ympev.2009.10.027
    • Marks, B. D. 2009 Are lowland rainforests really evolutionary museums? Phylogeography of the green hylia (Hylia prasina) in the Afrotropics. Mol. Phylogenet. Evol. 55, 178-184. (doi:10.1016/j.ympev.2009.10.027)
    • (2009) Mol. Phylogenet. Evol. , vol.55 , pp. 178-184
    • Marks, B.D.1
  • 24
    • 53849123654 scopus 로고    scopus 로고
    • Phylogeographic structure and regional history of Lemniscomys striatus (Rodentia: Muridae) in tropical Africa
    • doi:10.1111/j. 1365-2699.2008.01950.x
    • Nicolas, V., Mboumba, J.-F., Verheyen, E., Denys, C., Lecompte, E., Olayemi, A., Missoup, A. D., Katuala, P. & Colyn, M. 2008 Phylogeographic structure and regional history of Lemniscomys striatus (Rodentia: Muridae) in tropical Africa. J. Biogeogr. 35, 2074-2089. (doi:10.1111/j. 1365-2699.2008.01950.x)
    • (2008) J. Biogeogr. , vol.35 , pp. 2074-2089
    • Nicolas, V.1    Mboumba, J.-F.2    Verheyen, E.3    Denys, C.4    Lecompte, E.5    Olayemi, A.6    Missoup, A.D.7    Katuala, P.8    Colyn, M.9
  • 26
    • 72049107504 scopus 로고    scopus 로고
    • New heuristic methods for joint species delimitation and species tree inference
    • doi:10.1093/sysbio/syp077
    • O'Meara, B. C. 2010 New heuristic methods for joint species delimitation and species tree inference. Syst. Biol. 59, 59-73. (doi:10.1093/sysbio/syp077)
    • (2010) Syst. Biol. , vol.59 , pp. 59-73
    • O'Meara, B.C.1
  • 27
    • 50849124850 scopus 로고    scopus 로고
    • v1.4. Available from:
    • Rambaut, A. & Drummond, A. J. 2007. Tracer v1.4. Available from: http://beast.bio.ed.ac.uk/Tracer.
    • (2007) Tracer
    • Rambaut, A.1    Drummond, A.J.2
  • 28
    • 0041817551 scopus 로고    scopus 로고
    • Bayes Estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci
    • Rannala, B. & Yang, Z. 2003 Bayes Estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics 164, 1645-1656.
    • (2003) Genetics , vol.164 , pp. 1645-1656
    • Rannala, B.1    Yang, Z.2
  • 29
    • 77649268261 scopus 로고    scopus 로고
    • Species delimitation: A case study in a problematic ant taxon
    • doi:10. 1093/sysbio/syp089
    • Ross, K. G., Gotzek, D., Ascunce, M. S. & Shoemaker, D. D. 2009 Species delimitation: a case study in a problematic ant taxon. Syst. Biol. 59, 162-184. (doi:10. 1093/sysbio/syp089)
    • (2009) Syst. Biol. , vol.59 , pp. 162-184
    • Ross, K.G.1    Gotzek, D.2    Ascunce, M.S.3    Shoemaker, D.D.4
  • 30
    • 15944383111 scopus 로고    scopus 로고
    • The Dahomey Gap: An abrupt climatically induced rain forest fragmentation in West Africa during the late Holocene
    • DOI 10.1191/0959683605hl799rp
    • Salzmann, U. & Hoelzmann, P. 2005 The Dahomey gap: an abrupt climatically induced rain forest fragmentation in West Africa during the late Holocene. Holocene 15, 190-199. (doi:10.1191/0959683605hl799rp) (Pubitemid 40428312)
    • (2005) Holocene , vol.15 , Issue.2 , pp. 190-199
    • Salzmann, U.1    Hoelzmann, P.2
  • 31
    • 0000493084 scopus 로고
    • Contributions to the herpetology of the Belgian Congo based on the collection of the American Museum Congo Expedition 1909-1915. Part I. Turtles, crocodiles, lizards and chameleons
    • Schmidt, K. P. 1919 Contributions to the herpetology of the Belgian Congo based on the collection of the American Museum Congo Expedition 1909-1915. Part I. Turtles, crocodiles, lizards and chameleons. Bull Am. Mus. Nat. Hist. 39, 385-624.
    • (1919) Bull Am. Mus. Nat. Hist. , vol.39 , pp. 385-624
    • Schmidt, K.P.1
  • 32
    • 0042011260 scopus 로고    scopus 로고
    • Delimiting species: A Renaissance issue in systematic biology
    • DOI 10.1016/S0169-5347(03)00184-8
    • Sites Jr, J. W. & Marshall, J. C. 2003 Delimiting species: a renaissance issue in systematic biology. Trends Ecol. Evol. 18, 462-470. (doi:10.1016/S0169-5347(03)00184-8) (Pubitemid 37007507)
    • (2003) Trends in Ecology and Evolution , vol.18 , Issue.9 , pp. 462-470
    • Sites Jr., J.W.1    Marshall, J.C.2
  • 33
  • 34
    • 0242691208 scopus 로고    scopus 로고
    • A Comparison of Bayesian Methods for Haplotype Reconstruction from Population Genotype Data
    • DOI 10.1086/379378
    • Stephens, M. & Donnelly, P. 2003 A comparison of Bayesian methods for haplotype reconstruction. Am. J. Hum. Genet. 73, 1162-1169. (doi:10.1086/379378) (Pubitemid 37414228)
    • (2003) American Journal of Human Genetics , vol.73 , Issue.5 , pp. 1162-1169
    • Stephens, M.1    Donnelly, P.2
  • 35
    • 3042803766 scopus 로고    scopus 로고
    • What is speciation and how should we study it?
    • DOI 10.1086/386552
    • Wiens, J. J. 2004 What is speciation and how should we study it? Am. Nat 163, 914-923. (doi:10.1086/386552) (Pubitemid 38852144)
    • (2004) American Naturalist , vol.163 , Issue.6 , pp. 914-923
    • Wiens, J.J.1
  • 36
    • 77952703002 scopus 로고    scopus 로고
    • Bayesian species delimitation using multilocus sequence data
    • press doi:10.1073/pnas.0913022107
    • Yang, Z. & Rannala, B. In press. Bayesian species delimitation using multilocus sequence data. Proc. Natl Acad. Sci. USA 107, 9264-9269. (doi:10.1073/pnas.0913022107).
    • Proc. Natl Acad. Sci. USA , vol.107 , pp. 9264-9269
    • Yang, Z.1    Rannala, B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.