-
1
-
-
0036842986
-
Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia
-
Akman L, et al. 2002. Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia. Nat Genet. 32:402-407.
-
(2002)
Nat Genet.
, vol.32
, pp. 402-407
-
-
Akman, L.1
-
2
-
-
79251638682
-
The mitochondrial genome of the legume Vigna radiata and the analysis of recombination across short mitochondrial repeats
-
Alverson AJ, Zhuo S, Rice DW, Sloan DB, Palmer JD. 2011. The mitochondrial genome of the legume Vigna radiata and the analysis of recombination across short mitochondrial repeats. PLoS One 6:e16404.
-
(2011)
PLoS One
, vol.6
-
-
Alverson, A.J.1
Zhuo, S.2
Rice, D.W.3
Sloan, D.B.4
Palmer, J.D.5
-
5
-
-
0033561361
-
Animal mitochondrial genomes
-
Boore JL. 1999. Animal mitochondrial genomes. Nucleic Acids Res. 27:1767-1780.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1767-1780
-
-
Boore, J.L.1
-
6
-
-
0036143403
-
Genome-scale evolution: Reconstructing gene orders in the ancestral species
-
Bourque G, Pevzner PA. 2002. Genome-scale evolution: reconstructing gene orders in the ancestral species. Genome Res. 12:26-36.
-
(2002)
Genome Res.
, vol.12
, pp. 26-36
-
-
Bourque, G.1
Pevzner, P.A.2
-
8
-
-
23744515783
-
Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects
-
Degnan PH, Lazarus AB, Wernegreen JJ. 2005. Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects. Genome Res. 15:1023-1033.
-
(2005)
Genome Res.
, vol.15
, pp. 1023-1033
-
-
Degnan, P.H.1
Lazarus, A.B.2
Wernegreen, J.J.3
-
9
-
-
80053458871
-
Sequence conservation and functional constraint on intergenic spacers in reduced genomes of the obligate symbiont Buchnera
-
Degnan PH, Ochman H, Moran NA. 2011. Sequence conservation and functional constraint on intergenic spacers in reduced genomes of the obligate symbiont Buchnera. PLoS Genet. 7:e1002252.
-
(2011)
PLoS Genet.
, vol.7
-
-
Degnan, P.H.1
Ochman, H.2
Moran, N.A.3
-
10
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
11
-
-
9244225098
-
Mutants in the exo I motif of Escherichia coli dnaQ: Defective proofreading and inviability due to error catastrophe
-
Fijalkowska IJ, Schaaper RM. 1996. Mutants in the exo I motif of Escherichia coli dnaQ: defective proofreading and inviability due to error catastrophe. Proc Natl Acad Sci U S A. 93:2856-2861.
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 2856-2861
-
-
Fijalkowska, I.J.1
Schaaper, R.M.2
-
12
-
-
80053523629
-
The IGS standard operating procedure for automated prokaryotic annotation
-
Galens K, et al. 2011. The IGS standard operating procedure for automated prokaryotic annotation. Stand Genomic Sci. 4:244-251.
-
(2011)
Stand Genomic Sci.
, vol.4
, pp. 244-251
-
-
Galens, K.1
-
13
-
-
0041422250
-
The genome sequence of Blochmannia floridanus: Comparative analysis of reduced genomes
-
Gil R, et al. 2003. The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes. Proc Natl Acad Sci U S A. 100:9388-9393.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 9388-9393
-
-
Gil, R.1
-
14
-
-
84866334483
-
Genome sequence of Blattabacterium sp strain BGIGA, endosymbiont of the Blaberus giganteus cockroach
-
Huang CY, Sabree ZL, Moran NA. 2012. Genome sequence of Blattabacterium sp. strain BGIGA, endosymbiont of the Blaberus giganteus cockroach. J Bacteriol. 194:4450-4451.
-
(2012)
J Bacteriol.
, vol.194
, pp. 4450-4451
-
-
Huang, C.Y.1
Sabree, Z.L.2
Moran, N.A.3
-
15
-
-
0034628438
-
A tripeptide "anticodon" deciphers stop codons in messenger RNA
-
Ito K, Uno M, Nakamura Y. 2000. A tripeptide "anticodon" deciphers stop codons in messenger RNA. Nature 403:680-684.
-
(2000)
Nature
, vol.403
, pp. 680-684
-
-
Ito, K.1
Uno, M.2
Nakamura, Y.3
-
16
-
-
84874709428
-
Comparison of the genome sequences of "Candidatus Portiera aleyrodidarum" primary endosymbionts of the whitefly Bemisia tabaci B and Q biotypes
-
Jiang ZF, et al. 2013. Comparison of the genome sequences of "Candidatus Portiera aleyrodidarum" primary endosymbionts of the whitefly Bemisia tabaci B and Q biotypes. Appl Environ Microbiol. 79:1757-1759.
-
(2013)
Appl Environ Microbiol.
, vol.79
, pp. 1757-1759
-
-
Jiang, Z.F.1
-
17
-
-
0033040987
-
Intracellular bacterial symbionts of aphids possess many genomic copies per bacterium
-
Komaki K, Ishikawa H. 1999. Intracellular bacterial symbionts of aphids possess many genomic copies per bacterium. J Mol Evol. 48:717-722.
-
(1999)
J Mol Evol.
, vol.48
, pp. 717-722
-
-
Komaki, K.1
Ishikawa, H.2
-
18
-
-
70849114722
-
Deletional bias across the three domains of life
-
Kuo CH, Ochman H. 2009. Deletional bias across the three domains of life. Genome Biol Evol. 1:145-152.
-
(2009)
Genome Biol Evol.
, vol.1
, pp. 145-152
-
-
Kuo, C.H.1
Ochman, H.2
-
19
-
-
79960080098
-
New clues about the evolutionary history of metabolic losses in bacterial endosymbionts, provided by the genome of Buchnera aphidicola from the aphid Cinara tujafilina
-
Lamelas A, Gosalbes MJ, Moya A, Latorre A. 2011. New clues about the evolutionary history of metabolic losses in bacterial endosymbionts, provided by the genome of Buchnera aphidicola from the aphid Cinara tujafilina. Appl Environ Microbiol. 77:4446-4454.
-
(2011)
Appl Environ Microbiol.
, vol.77
, pp. 4446-4454
-
-
Lamelas, A.1
Gosalbes, M.J.2
Moya, A.3
Latorre, A.4
-
20
-
-
14544300681
-
A Bayesian analysis of metazoan mitochondrial genome arrangements
-
Larget B, Simon DL, Kadane JB, Sweet D. 2005. A Bayesian analysis of metazoan mitochondrial genome arrangements. Mol Biol Evol. 22:486-495.
-
(2005)
Mol Biol Evol.
, vol.22
, pp. 486-495
-
-
Larget, B.1
Simon, D.L.2
Kadane, J.B.3
Sweet, D.4
-
21
-
-
67650711615
-
SOAP2: An improved ultrafast tool for short read alignment
-
Li R, et al. 2009. SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 25:1966-1967.
-
(2009)
Bioinformatics
, vol.25
, pp. 1966-1967
-
-
Li, R.1
-
22
-
-
0026674737
-
DNA replication defect in Salmonella typhimurium mutants lacking the editing (epsilon) subunit of DNA polymerase III
-
Lifsics MR, Lancy ED, Maurer R. 1992. DNA replication defect in Salmonella typhimurium mutants lacking the editing (epsilon) subunit of DNA polymerase III. J Bacteriol. 174:6965-6973.
-
(1992)
J Bacteriol.
, vol.174
, pp. 6965-6973
-
-
Lifsics, M.R.1
Lancy, E.D.2
Maurer, R.3
-
23
-
-
80052624718
-
Fast and accurate phylogenetic reconstruction from high-resolution whole-genome data and a novel robustness estimator
-
Lin Y, Rajan V, Moret BM. 2011. Fast and accurate phylogenetic reconstruction from high-resolution whole-genome data and a novel robustness estimator. J Comput Biol. 18:1131-1139.
-
(2011)
J Comput Biol.
, vol.18
, pp. 1131-1139
-
-
Lin, Y.1
Rajan, V.2
Moret, B.M.3
-
24
-
-
73649124197
-
Evolutionary convergence and nitrogen metabolism in Blattabacterium strain Bge, primary endosymbiont of the cockroach Blattella germanica
-
Lopez-Sanchez MJ, et al. 2009. Evolutionary convergence and nitrogen metabolism in Blattabacterium strain Bge, primary endosymbiont of the cockroach Blattella germanica. PLoS Genet. 5:e1000721.
-
(2009)
PLoS Genet.
, vol.5
-
-
Lopez-Sanchez, M.J.1
-
25
-
-
69949116874
-
IMG ER: A system for microbial genome annotation expert review and curation
-
Markowitz VM, et al. 2009. IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 25:2271-2278.
-
(2009)
Bioinformatics
, vol.25
, pp. 2271-2278
-
-
Markowitz, V.M.1
-
26
-
-
34347326139
-
An annotated check list of the world's whiteflies (Insecta: Hemiptera: Aleyrodidae)
-
Martin JH, Mound LA. 2007. An annotated check list of the world's whiteflies (Insecta: Hemiptera: Aleyrodidae). Zootaxa 1492:1-84.
-
(2007)
Zootaxa
, vol.1492
, pp. 1-84
-
-
Martin, J.H.1
Mound, L.A.2
-
27
-
-
70349349177
-
Convergent evolution of metabolic roles in bacterial co-symbionts of insects
-
McCutcheon JP, McDonald BR, Moran NA. 2009. Convergent evolution of metabolic roles in bacterial co-symbionts of insects. Proc Natl Acad Sci U S A. 106:15394-15399.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 15394-15399
-
-
McCutcheon, J.P.1
McDonald, B.R.2
Moran, N.A.3
-
28
-
-
37649023694
-
Parallel genomic evolution and metabolic interdependence in an ancient symbiosis
-
McCutcheon JP, Moran NA. 2007. Parallel genomic evolution and metabolic interdependence in an ancient symbiosis. Proc Natl Acad Sci U S A. 104:19392-19397.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 19392-19397
-
-
McCutcheon, J.P.1
Moran, N.A.2
-
29
-
-
77958507828
-
Functional convergence in reduced genomes of bacterial symbionts spanning 200 My of evolution
-
McCutcheon JP, Moran NA. 2010. Functional convergence in reduced genomes of bacterial symbionts spanning 200 My of evolution. Genome Biol Evol. 2:708-718.
-
(2010)
Genome Biol Evol.
, vol.2
, pp. 708-718
-
-
McCutcheon, J.P.1
Moran, N.A.2
-
30
-
-
83855165692
-
Extreme genome reduction in symbiotic bacteria
-
McCutcheon JP, Moran NA. 2011. Extreme genome reduction in symbiotic bacteria. Nat Rev Microbiol. 10:13-26.
-
(2011)
Nat Rev Microbiol.
, vol.10
, pp. 13-26
-
-
McCutcheon, J.P.1
Moran, N.A.2
-
31
-
-
80051978497
-
An interdependent metabolic patchwork in the nested symbiosis of mealybugs
-
McCutcheon JP, Von Dohlen CD. 2011. An interdependent metabolic patchwork in the nested symbiosis of mealybugs. Curr Biol. 21:1366-1372.
-
(2011)
Curr Biol.
, vol.21
, pp. 1366-1372
-
-
McCutcheon, J.P.1
Von Dohlen, C.D.2
-
32
-
-
0035479142
-
Deletional bias and the evolution of bacterial genomes
-
Mira A, Ochman H, Moran NA. 2001. Deletional bias and the evolution of bacterial genomes. Trends Genet. 17:589-596.
-
(2001)
Trends Genet.
, vol.17
, pp. 589-596
-
-
Mira, A.1
Ochman, H.2
Moran, N.A.3
-
33
-
-
0037223622
-
The essential role of the invariant GGQ motif in the function and stability in vivo of bacterial release factors RF1 and RF2
-
Mora L, et al. 2003. The essential role of the invariant GGQ motif in the function and stability in vivo of bacterial release factors RF1 and RF2. Mol Microbiol. 47:267-275.
-
(2003)
Mol Microbiol.
, vol.47
, pp. 267-275
-
-
Mora, L.1
-
35
-
-
33749987465
-
The 160-kilobase genome of the bacterial endosymbiont Carsonella
-
Nakabachi A, et al. 2006. The 160-kilobase genome of the bacterial endosymbiont Carsonella. Science 314:267.
-
(2006)
Science
, vol.314
, pp. 267
-
-
Nakabachi, A.1
-
36
-
-
84859131305
-
Genome economization in the endosymbiont of the wood roach Cryptocercus punctulatus due to drastic loss of amino acid synthesis capabilities
-
Neef A, et al. 2011. Genome economization in the endosymbiont of the wood roach Cryptocercus punctulatus due to drastic loss of amino acid synthesis capabilities. Genome Biol Evol. 3:1437-1448.
-
(2011)
Genome Biol Evol.
, vol.3
, pp. 1437-1448
-
-
Neef, A.1
-
37
-
-
0021264854
-
Tripartite structure of the Brassica campestris mitochondrial genome
-
Palmer JD, Shields CR. 1984. Tripartite structure of the Brassica campestris mitochondrial genome. Nature 307:437-440.
-
(1984)
Nature
, vol.307
, pp. 437-440
-
-
Palmer, J.D.1
Shields, C.R.2
-
38
-
-
33750009568
-
A small microbial genome: The end of a long symbiotic relationship?
-
Perez-Brocal V, et al. 2006. A small microbial genome: the end of a long symbiotic relationship? Science 314:312-313.
-
(2006)
Science
, vol.314
, pp. 312-313
-
-
Perez-Brocal, V.1
-
40
-
-
84863278416
-
Insight into the transmission biology and speciesspecific functional capabilities of tsetse (Diptera: Glossinidae) obligate symbiont Wigglesworthia
-
Rio RV, et al. 2012. Insight into the transmission biology and speciesspecific functional capabilities of tsetse (Diptera: Glossinidae) obligate symbiont Wigglesworthia. MBio 3:e00240-11.
-
(2012)
MBio
, vol.3
-
-
Rio, R.V.1
-
41
-
-
84862932996
-
Genome shrinkage and loss of nutrient-providing potential in the obligate symbiont of the primitive termite Mastotermes darwiniensis
-
Sabree ZL, et al. 2012. Genome shrinkage and loss of nutrient-providing potential in the obligate symbiont of the primitive termite Mastotermes darwiniensis. Appl Environ Microbiol. 78:204-210.
-
(2012)
Appl Environ Microbiol.
, vol.78
, pp. 204-210
-
-
Sabree, Z.L.1
-
42
-
-
73349101558
-
Nitrogen recycling and nutritional provisioning by Blattabacterium, the cockroach endosymbiont
-
Sabree ZL, Kambhampati S, Moran NA. 2009. Nitrogen recycling and nutritional provisioning by Blattabacterium, the cockroach endosymbiont. Proc Natl Acad Sci U S A. 106:19521-19526.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 19521-19526
-
-
Sabree, Z.L.1
Kambhampati, S.2
Moran, N.A.3
-
43
-
-
84871086098
-
Complete genome sequence of "Candidatus Portiera aleyrodidarum" BT-QVLC, an obligate symbiont that supplies amino acids and carotenoids to Bemisia tabaci
-
Santos-Garcia D, et al. 2012. Complete genome sequence of "Candidatus Portiera aleyrodidarum" BT-QVLC, an obligate symbiont that supplies amino acids and carotenoids to Bemisia tabaci. J Bacteriol. 194:6654-6655.
-
(2012)
J Bacteriol.
, vol.194
, pp. 6654-6655
-
-
Santos-Garcia, D.1
-
44
-
-
0015927177
-
Generation time and genomic evolution in primates
-
Sarich VM, Wilson AC. 1973. Generation time and genomic evolution in primates. Science 179:1144-1147.
-
(1973)
Science
, vol.179
, pp. 1144-1147
-
-
Sarich, V.M.1
Wilson, A.C.2
-
45
-
-
0034618559
-
Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS
-
Shigenobu S, Watanabe H, Hattori M, Sakaki Y, Ishikawa H. 2000. Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS. Nature 407:81-86.
-
(2000)
Nature
, vol.407
, pp. 81-86
-
-
Shigenobu, S.1
Watanabe, H.2
Hattori, M.3
Sakaki, Y.4
Ishikawa, H.5
-
46
-
-
0037384544
-
Why are the genomes of endosymbiotic bacteria so stable?
-
Silva FJ, Latorre A, Moya A. 2003. Why are the genomes of endosymbiotic bacteria so stable? Trends Genet. 19:176-180.
-
(2003)
Trends Genet.
, vol.19
, pp. 176-180
-
-
Silva, F.J.1
Latorre, A.2
Moya, A.3
-
47
-
-
84868092923
-
Genome reduction and co-evolution between the primary and secondary bacterial symbionts of psyllids
-
Sloan DB, Moran NA. 2012a. Genome reduction and co-evolution between the primary and secondary bacterial symbionts of psyllids. Mol Biol Evol. 29:3781-3792.
-
(2012)
Mol Biol Evol.
, vol.29
, pp. 3781-3792
-
-
Sloan, D.B.1
Moran, N.A.2
-
48
-
-
84869840246
-
Endosymbiotic bacteria as a source of carotenoids in whiteflies
-
Sloan DB, Moran NA. 2012b. Endosymbiotic bacteria as a source of carotenoids in whiteflies. Biol Lett. 8:986-989.
-
(2012)
Biol Lett.
, vol.8
, pp. 986-989
-
-
Sloan, D.B.1
Moran, N.A.2
-
49
-
-
0031730414
-
Phylogenetic characterization and molecular evolution of bacterial endosymbionts in psyllids (Hemiptera: Sternorrhyncha)
-
Spaulding AW, Von Dohlen CD. 1998. Phylogenetic characterization and molecular evolution of bacterial endosymbionts in psyllids (Hemiptera: Sternorrhyncha). Mol Biol Evol. 15:1506-1513.
-
(1998)
Mol Biol Evol.
, vol.15
, pp. 1506-1513
-
-
Spaulding, A.W.1
Von Dohlen, C.D.2
-
50
-
-
18644368714
-
The BioPerl toolkit: Perl modules for the life sciences
-
Stajich JE, et al. 2002. The BioPerl toolkit: Perl modules for the life sciences. Genome Res. 12:1611-1618.
-
(2002)
Genome Res.
, vol.12
, pp. 1611-1618
-
-
Stajich, J.E.1
-
51
-
-
0027453388
-
Simple methods for testing the molecular evolutionary clock hypothesis
-
Tajima F. 1993. Simple methods for testing the molecular evolutionary clock hypothesis. Genetics 135:599-607.
-
(1993)
Genetics
, vol.135
, pp. 599-607
-
-
Tajima, F.1
-
52
-
-
0037189373
-
50 million years of genomic stasis in endosymbiotic bacteria
-
Tamas I, et al. 2002. 50 million years of genomic stasis in endosymbiotic bacteria. Science 296:2376-2379.
-
(2002)
Science
, vol.296
, pp. 2376-2379
-
-
Tamas, I.1
-
53
-
-
0038658640
-
Efficient algorithms for multichromosomal genome rearrangements
-
Tesler G. 2002. Efficient algorithms for multichromosomal genome rearrangements. J Comp Syst Sci. 65:587-609.
-
(2002)
J Comp Syst Sci.
, vol.65
, pp. 587-609
-
-
Tesler, G.1
-
54
-
-
2942595767
-
Evolutionary relationships of primary prokaryotic endosymbionts of whiteflies and their hosts
-
Thao ML, Baumann P. 2004. Evolutionary relationships of primary prokaryotic endosymbionts of whiteflies and their hosts. Appl Environ Microbiol. 70:3401-3406.
-
(2004)
Appl Environ Microbiol.
, vol.70
, pp. 3401-3406
-
-
Thao, M.L.1
Baumann, P.2
-
55
-
-
32044474423
-
Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host
-
Toh H, et al. 2006. Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host. Genome Res. 16:149-156.
-
(2006)
Genome Res.
, vol.16
, pp. 149-156
-
-
Toh, H.1
-
56
-
-
0037457901
-
Reductive genome evolution in Buchnera aphidicola
-
Van Ham RC, et al. 2003. Reductive genome evolution in Buchnera aphidicola. Proc Natl Acad Sci U S A. 100:581-586.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 581-586
-
-
Van Ham, R.C.1
-
57
-
-
78649588858
-
Unprecedented loss of ammonia assimilation capability in a urease-encoding bacterial mutualist
-
Williams LE, Wernegreen JJ. 2010. Unprecedented loss of ammonia assimilation capability in a urease-encoding bacterial mutualist. BMC Genomics 11:687.
-
(2010)
BMC Genomics
, vol.11
, pp. 687
-
-
Williams, L.E.1
Wernegreen, J.J.2
-
58
-
-
77953807223
-
One bacterial cell, one complete genome
-
Woyke T, et al. 2010. One bacterial cell, one complete genome. PLoS One 5:e10314.
-
(2010)
PLoS One
, vol.5
-
-
Woyke, T.1
-
59
-
-
34548575139
-
Proofreading and secondary structure processing determine the orientation dependence of CAG x CTG trinucleotide repeat instability in Escherichia coli
-
Zahra R, Blackwood JK, Sales J, Leach DR. 2007. Proofreading and secondary structure processing determine the orientation dependence of CAG x CTG trinucleotide repeat instability in Escherichia coli. Genetics 176:27-41.
-
(2007)
Genetics
, vol.176
, pp. 27-41
-
-
Zahra, R.1
Blackwood, J.K.2
Sales, J.3
Leach, D.R.4
-
60
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
-
(2008)
Genome Res.
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
|