-
1
-
-
66049158304
-
Breakpoint graphs and ancestral genome reconstructions
-
Alekseyev, M., and Pevzner, P. 2009. Breakpoint graphs and ancestral genome reconstructions. Genome Res. 19, 943-957.
-
(2009)
Genome Res.
, vol.19
, pp. 943-957
-
-
Alekseyev, M.1
Pevzner, P.2
-
2
-
-
0141609704
-
A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships
-
DOI 10.1016/S1055-7903(03)00118-0
-
Amrine-Madsen, H., Koepfli, K.-P., Wayne, R., et al. 2003. A new phylogenetic marker, apolipoprotein b, provides compelling evidence for eutherian relationships. Mol. Phylogenet Evol. 28, 225-240. (Pubitemid 37446824)
-
(2003)
Molecular Phylogenetics and Evolution
, vol.28
, Issue.2
, pp. 225-240
-
-
Amrine-Madsen, H.1
Koepfli, K.-P.2
Wayne, R.K.3
Springer, M.S.4
-
3
-
-
33750264868
-
A unifying view of genome rearrangements
-
Algorithms in Bioinformatics - 6th International Workshop, WABI 2006, Proceedings
-
Bergeron, A., Mixtacki, J., and Stoye, J. 2006. A unifying view of genome rearrangements. In Lect. Notes Comput. Sci. 4175, 163-173. (Pubitemid 44609667)
-
(2006)
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
, vol.4175
, pp. 163-173
-
-
Bergeron, A.1
Mixtacki, J.2
Stoye, J.3
-
4
-
-
0002163159
-
Breakpoint phylogenies
-
In Miyano, S., and Takagi, T., eds. University Academy Press, Tokyo
-
Blanchette, M., Bourque, G., and Sankoff, D. 1997. Breakpoint phylogenies, 25-34. In Miyano, S., and Takagi, T., eds., Genome Informatics, University Academy Press, Tokyo.
-
(1997)
Genome Informatics
, pp. 25-34
-
-
Blanchette, M.1
Bourque, G.2
Sankoff, D.3
-
5
-
-
0036143403
-
Genome-scale evolution: Reconstructing gene orders in the ancestral species
-
Bourque, G., and Pevzner, P. 2002. Genome-scale evolution: reconstructing gene orders in the ancestral species. Genome Res. 12, 26-36. (Pubitemid 34065587)
-
(2002)
Genome Research
, vol.12
, Issue.1
, pp. 26-36
-
-
Bourque, G.1
Pevzner, P.A.2
-
6
-
-
33846491679
-
A phylogenomic study ofhuman, dog, and mouse
-
Cannarozzi, G., Schneider, A., and Gonnet, G 2007. A phylogenomic study ofhuman, dog, and mouse. PLo S Comput. Biol. 3, e2.
-
(2007)
PLo S Comput. Biol.
, vol.3
-
-
Cannarozzi, G.1
Schneider, A.2
Gonnet, G.3
-
7
-
-
0023099491
-
Computational complexity of inferring phylogenies from chromosome inversion data
-
DOI 10.1016/S0022-5193(87)80263-1
-
Day, W., and Sankoff, D. 1987. The computational complexity of inferring phylogenies from chromosome inversion data. J. Theor. Biol. 127, 213-218. (Pubitemid 17004339)
-
(1987)
Journal of Theoretical Biology
, vol.124
, Issue.2
, pp. 213-218
-
-
Day, W.H.E.1
Sankoff, D.2
-
8
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
9
-
-
12044259827
-
Is there something wrong with the bootstrap on phylogenies? A reply to Hillis and Bull
-
Felsenstein, J., and Kishino, H. 1993. Is there something wrong with the bootstrap on phylogenies? A reply to Hillis and Bull. Syst. Biol. 42, 193-200.
-
(1993)
Syst. Biol.
, vol.42
, pp. 193-200
-
-
Felsenstein, J.1
Kishino, H.2
-
10
-
-
65849260160
-
-
MIT Press, Cambridge, MA
-
Fertin, G., Labarre, A., Rusu, I., et al. 2009. Combinatorics of Genome Rearrangements. MIT Press, Cambridge, MA.
-
(2009)
Combinatorics of Genome Rearrangements.
-
-
Fertin, G.1
Labarre, A.2
Rusu, I.3
-
11
-
-
2642613543
-
Assessing molecular phylogenies
-
Hillis, D., and Huelsenbeck, J. 1995. Assessing molecular phylogenies. Science 267, 255-256.
-
(1995)
Science
, vol.267
, pp. 255-256
-
-
Hillis, D.1
Huelsenbeck, J.2
-
12
-
-
34547753508
-
Rates of genome evolution and branching order from whole genome analysis
-
DOI 10.1093/molbev/msm094
-
Huttley, G., Wakefield, M., and Easteal, S. 2007. Rates of genome evolution and branching order from whole-genome analysis. Mol. Biol. Evol. 24, 1722-1730. (Pubitemid 47236694)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.8
, pp. 1722-1730
-
-
Huttley, G.A.1
Wakefield, M.J.2
Easteal, S.3
-
13
-
-
46249101804
-
Estimating true evolutionary distances under the DCJ model
-
DOI 10.1093/bioinformatics/btn148
-
Lin, Y., and Moret, B. 2008. Estimating true evolutionary distances under the DCJ model. Bioinformatics 24, i114-i122. (Pubitemid 351911664)
-
(2008)
Bioinformatics
, vol.24
, Issue.13
-
-
Lin, Y.1
Moret, B.M.E.2
-
14
-
-
75149182864
-
Estimating true evolutionary distances under rearrangements, duplications, and losses
-
Lin, Y., Rajan, V., Swenson, K., et al. 2010. Estimating true evolutionary distances under rearrangements, duplications, and losses. BMCBioinform. 11, S54.
-
(2010)
BMCBioinform.
, vol.11
-
-
Lin, Y.1
Rajan, V.2
Swenson, K.3
-
15
-
-
0035252569
-
Parallel adaptive radiations in two major clades of placental mammals
-
DOI 10.1038/35054544
-
Madsen, O., Scally, M., Douady, C., et al. 2001. Parallel adaptive radiations in two major clades ofplacental mammals. Nature 409, 610-614. (Pubitemid 32154811)
-
(2001)
Nature
, vol.409
, Issue.6820
, pp. 610-614
-
-
Madsen, O.1
Scally, M.2
Douady, C.J.3
Kao, D.J.4
DeBry, R.W.5
Adkins, R.6
Amrine, H.M.7
Stanhope, M.J.8
De Jong, W.W.9
Springer, M.S.10
-
16
-
-
23844520968
-
Steps toward accurate reconstructions of phylogenies from gene-order data
-
DOI 10.1016/S0022-0000(02)00007-7, PII S0022000002000077
-
Moret, B., Tang, J., Wang, L.-S., et al. 2002. Steps toward accurate reconstructions of phylogenies from gene-order data. J. Comput. Syst. Sci. 65, 508-525. (Pubitemid 41161953)
-
(2003)
Journal of Computer and System Sciences
, vol.65
, Issue.3
, pp. 508-525
-
-
Moret, B.M.E.1
Tang, J.2
Wang, L.-S.3
Warnow, T.4
-
17
-
-
0035234694
-
A new implementation and detailed study of breakpoint analysis
-
Moret, B., Wyman, S., Bader, D., et al. 2001. A new implementation and detailed study of breakpoint analysis. Proc. 6th Pac. Symp. Biocomput. 583-594.
-
(2001)
Proc. 6th Pac. Symp. Biocomput.
, pp. 583-594
-
-
Moret, B.1
Wyman, S.2
Bader, D.3
-
18
-
-
0035252080
-
Molecular phylogenetics and the origins of placental mammals
-
DOI 10.1038/35054550
-
Murphy, W., Eizirik, E., Johnson, W., et al. 2001. Molecular phylogenetics and the origins of placental mammals. Nature 409, 614-618. (Pubitemid 32154812)
-
(2001)
Nature
, vol.409
, Issue.6820
, pp. 614-618
-
-
Murphy, W.J.1
Eizirik, E.2
Johnson, W.E.3
Zhang, Y.P.4
Ryder, O.A.5
O'Brien, S.J.6
-
19
-
-
85036788482
-
A language and environment for statistical computing
-
R Development Core Team, 2009. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna.
-
(2009)
R Foundation for Statistical Computing, Vienna
-
-
-
20
-
-
0019424782
-
Comparison of phylogenetic trees
-
DOI 10.1016/0025-5564(81)90043-2
-
Robinson, D., and Foulds, L. 1981. Comparison of phylogenetic trees. Math. Biosci. 53, 131-147. (Pubitemid 11129084)
-
(1981)
Mathematical Biosciences
, vol.53
, Issue.1-2
, pp. 131-147
-
-
Robinson, D.F.1
Foulds, L.R.2
-
21
-
-
0033793019
-
Rare genomic changes as a tool for phylogenetics
-
Rokas, A., and Holland, P. 2000. Rare genomic changes as a tool for phylogenetics. Trends Ecol. Evol. 15, 454-459.
-
(2000)
Trends Ecol. Evol.
, vol.15
, pp. 454-459
-
-
Rokas, A.1
Holland, P.2
-
22
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
23
-
-
77950533243
-
Using jackknife to assess the quality of gene order phylogenies
-
Shi, J., Zhang, Y., Luo, H., et al. 2010. Using jackknife to assess the quality of gene order phylogenies. BMC Bioinform. 11, 168.
-
(2010)
BMC Bioinform.
, vol.11
, pp. 168
-
-
Shi, J.1
Zhang, Y.2
Luo, H.3
-
24
-
-
0347532847
-
Applying the bootstrap in phylogeny reconstruction
-
DOI 10.1214/ss/1063994980
-
Soltis, P., and Soltis, D. 2003. Applying the bootstrap in phylogeny reconstruction. Statist. Sci. 18, 256-267. (Pubitemid 37545098)
-
(2003)
Statistical Science
, vol.18
, Issue.2
, pp. 256-267
-
-
Soltis, P.S.1
Soltis, D.E.2
-
25
-
-
0001637701
-
A crossover reducer in Drosophila melanogaster due to inversion of a section of the third chromosome
-
Sturtevant, A. 1926. A crossover reducer in Drosophila melanogaster due to inversion of a section of the third chromosome. Biol. Zent. Bl. 46, 697-702.
-
(1926)
Biol. Zent. Bl.
, vol.46
, pp. 697-702
-
-
Sturtevant, A.1
-
26
-
-
0000309645
-
Inversions in the third chromosome of wild races of drosophila pseu-doobscura and their use in the study of the history of the species
-
Sturtevant, A., and Dobzhansky, T. 1936. Inversions in the third chromosome of wild races of drosophila pseu-doobscura and their use in the study of the history of the species. Proc. Natl. Acad. Sci. USA 22, 448-450.
-
(1936)
Proc. Natl. Acad. Sci. USA
, vol.22
, pp. 448-450
-
-
Sturtevant, A.1
Dobzhansky, T.2
-
27
-
-
0001336205
-
Phylogenetic inference
-
In Hillis D., Mable, B., and Moritz C., eds. Sunderland, MA
-
Swofford, D., Olsen, G., Waddell, P., et al. 1996. Phylogenetic inference, 407-514. In Hillis, D., Mable, B., and Moritz, C., eds., Molecular Systematics, Sinauer Assoc., Sunderland, MA.
-
(1996)
Molecular Systematics, Sinauer Assoc
, pp. 407-514
-
-
Swofford, D.1
Olsen, G.2
Waddell, P.3
-
28
-
-
0345225320
-
Scaling up accurate phylogenetic reconstruction from gene-order data
-
Tang, J., and Moret, B. 2003. Scaling up accurate phylogenetic reconstruction from gene-order data. Bioinformatics 19, i305-i312.
-
(2003)
Bioinformatics
, vol.19
-
-
Tang, J.1
Moret, B.2
-
30
-
-
0008745750
-
Estimating true evolutionary distances between genomes
-
Wang, L.-S., and Warnow, T. 2001. Estimating true evolutionary distances between genomes. Lect. Notes Comput. Sci. 2149, 176-190.
-
(2001)
Lect. Notes Comput. Sci.
, vol.2149
, pp. 176-190
-
-
Wang, L.-S.1
Warnow, T.2
-
31
-
-
35448956570
-
Genomics, biogeography, and the diversification of placental mammals
-
DOI 10.1073/pnas.0704342104
-
Wildman, D., Uddin, M., Opazo, J., et al. 2007. Genomics, biogeography, and the diversification of placental mammals. Proc. Natl. Acad. Sci. USA 104, 14395-14400. (Pubitemid 350003272)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.36
, pp. 14395-14400
-
-
Wildman, D.E.1
Uddin, M.2
Opazo, J.C.3
Liu, G.4
Lefort, V.5
Guindon, S.6
Gascuel, O.7
Grossman, L.I.8
Romero, R.9
Goodman, M.10
-
32
-
-
24044535485
-
Efficient sorting of genomic permutations by translocation, inversion and block interchange
-
DOI 10.1093/bioinformatics/bti535
-
Yancopoulos, S., Attie, O., and Friedberg, R. 2005. Efficient sorting of genomic permutations by translocation, inversion and block interchange. Bioinformatics 21, 3340-3346. (Pubitemid 41222437)
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3340-3346
-
-
Yancopoulos, S.1
Attie, O.2
Friedberg, R.3
-
33
-
-
0036699481
-
Increased taxon sampling greatly reduces phylogenetic error
-
DOI 10.1080/10635150290102339
-
Zwickl, D., and Hillis, D. 2002. Increased taxon sampling greatly reduces phylogenetic error. Syst. Biol. 51, 588-598. (Pubitemid 35180690)
-
(2002)
Systematic Biology
, vol.51
, Issue.4
, pp. 588-598
-
-
Zwickl, D.J.1
Hillis, D.M.2
|