Rates of phenotypic and genomic evolution during the Cambrian explosion

Current Biology

Volumn 23, Issue 19, 2013, Pages 1889-1895

  Lee, Michael S Y ^a,b   Soubrier, Julien ^a   Edgecombe, Gregory D ^c  

^a UNIVERSITY OF ADELAIDE   (Australia)

^b SOUTH AUSTRALIAN MUSEUM   (Australia)

^c DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALIA; ARTHROPODA;

ANIMAL; ARTHROPOD; ARTICLE; BAYES THEOREM; CLASSIFICATION; EVOLUTION; FOSSIL; GENETIC SELECTION; GENETICS; GENOME; HISTORY; MOLECULAR EVOLUTION; MORPHOGENESIS; PHYLOGENY;

ANIMALS; ARTHROPODS; BAYES THEOREM; BIOLOGICAL EVOLUTION; BODY PATTERNING; EVOLUTION, MOLECULAR; FOSSILS; GENOME; HISTORY, ANCIENT; PHYLOGENY; SELECTION, GENETIC;

EID: 84885304485     PISSN: 09609822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cub.2013.07.055     Document Type: Article

References (42)

1. S.J. Gould Wonderful Life: The Burgess Shale and the Nature of History 1989 W.W. Norton New York
2. G.E. Budd The earliest fossil record of the animals and its significance Philos. Trans. R. Soc. Lond. B Biol. Sci. 363 2008 1425 1434
3. S. Conway Morris Darwin's dilemma: the realities of the Cambrian 'explosion' Philos. Trans. R. Soc. Lond. B Biol. Sci. 361 2006 1069 1083
4. D.H. Erwin, M. Laflamme, S.M. Tweedt, E.A. Sperling, D. Pisani, and K.J. Peterson The Cambrian conundrum: early divergence and later ecological success in the early history of animals Science 334 2011 1091 1097
5. S.E. Peters, and R.R. Gaines Formation of the 'Great Unconformity' as a trigger for the Cambrian explosion Nature 484 2012 363 366
6. R.A. Fortey, D.E.G. Briggs, and M.A. Wills The Cambrian evolutionary 'explosion': Decoupling cladogenesis from morphological disparity Biol. J. Linn. Soc. Lond. 57 1996 13 33
7. J. Levinton, L. Dubb, and G.A. Wray Simulations of evolutionary radiations and their application to understanding the probability of a Cambrian explosion J. Paleontol. 78 2004 31 38
8. J.W. Valentine On the Origin of Phyla 2004 University of Chicago Press Chicago
9. C.W. Wheat, and N. Wahlberg Phylogenomic insights into the Cambrian explosion, the colonization of land and the evolution of flight in arthropoda Syst. Biol. 62 2013 93 109
10. S. Jensen, M.L. Droser, and J.G. Gehling Trace fossil preservation and the early evolution of animals Palaeogeogr. Palaeoclimatol. Palaeoecol. 220 2005 19 29
11. P. Rehm, J. Borner, K. Meusemann, B.M. von Reumont, S. Simon, H. Hadrys, B. Misof, and T. Burmester Dating the arthropod tree based on large-scale transcriptome data Mol. Phylogenet. Evol. 61 2011 880 887
12. O. Rota-Stabelli, A.C. Daley, and D. Pisani Molecular timetrees reveal a Cambrian colonization of land and a new scenario for ecdysozoan evolution Curr. Biol. 23 2013 392 398
13. A.J. Drummond, S.Y.W. Ho, M.J. Phillips, and A. Rambaut Relaxed phylogenetics and dating with confidence PLoS Biol. 4 2006 e88
14. A.J. Drummond, M.A. Suchard, D. Xie, and A. Rambaut Bayesian phylogenetics with BEAUti and the BEAST 1.7 Mol. Biol. Evol. 29 2012 1969 1973
15. M.J. Sanderson r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock Bioinformatics 19 2003 301 302
16. O. Rota-Stabelli, L. Campbell, H. Brinkmann, G.D. Edgecombe, S.J. Longhorn, K.J. Peterson, D. Pisani, H. Philippe, and M.J. Telford A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata Proc. Biol. Sci. 278 2011 298 306
17. J.C. Regier, J.W. Shultz, A. Zwick, A. Hussey, B. Ball, R. Wetzer, J.W. Martin, and C.W. Cunningham Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences Nature 463 2010 1079 1083
18. E.H. Davidson The Regulatory Genome: Gene Regulatory Networks in Development and Evolution 2006 Academic Press New York
19. D.E.G. Briggs, R.A. Fortey, and M.A. Wills Morphological disparity in the Cambrian Science 256 1992 1670 1673
20. R.D.K. Thomas, R.M. Shearman, and G.W. Stewart Evolutionary exploitation of design options by the first animals with hard skeletons Science 288 2000 1239 1242
21. M.-Y. Zhu, L.E. Babcock, and S.-C. Peng Advances in Cambrian stratigraphy and paleontology: Integrating correlation techniques, paleobiology, taphonomy and paleoenvironmental reconstruction Palaeoworld 15 2006 217 222
22. G.D. Edgecombe Palaeomorphology: fossils and the inference of cladistic relationships Acta Zool. 91 2010 72 80
23. S. Aris-Brosou, and Z. Yang Effects of models of rate evolution on estimation of divergence dates with special reference to the metazoan 18S ribosomal RNA phylogeny Syst. Biol. 51 2002 703 714
24. S. Aris-Brosou, and Z. Yang Bayesian models of episodic evolution support a late Precambrian explosive diversification of the Metazoa Mol. Biol. Evol. 20 2003 1947 1954
25. J.J. Welch, E. Fontanillas, and L. Bromham Molecular dates for the "Cambrian explosion": the influence of prior assumptions Syst. Biol. 54 2005 672 678
26. S.Y.W. Ho, M.J. Phillips, A.J. Drummond, and A. Cooper Accuracy of rate estimation using relaxed-clock models with a critical focus on the early metazoan radiation Mol. Biol. Evol. 22 2005 1355 1363
27. F. Ronquist, S. Klopfstein, L. Vilhelmsen, S. Schulmeister, D.L. Murray, and A.P. Rasnitsyn A total-evidence approach to dating with fossils, applied to the early radiation of the Hymenoptera Syst. Biol. 61 2012 973 999
28. R.A. Pyron Divergence time estimation using fossils as terminal taxa and the origins of Lissamphibia Syst. Biol. 60 2011 466 481
29. J.C. Regier, and A. Zwick Sources of signal in 62 protein-coding nuclear genes for higher-level phylogenetics of arthropods PLoS ONE 6 2011 e23408
30. M.S.Y. Lee, and A.B. Camens Strong morphological support for the molecular evolutionary tree of placental mammals J. Evol. Biol. 22 2009 2243 2257
31. A. Stamatakis RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models Bioinformatics 22 2006 2688 2690
32. O. Rota-Stabelli, N. Lartillot, H. Philippe, and D. Pisani Serine codon-usage bias in deep phylogenomics: pancrustacean relationships as a case study Syst. Biol. 62 2013 121 133
33. G. Giribet, and G.D. Edgecombe Reevaluating the arthropod tree of life Annu. Rev. Entomol. 57 2012 167 186
34. T.H.P. Harvey, M.I. Vélez, and N.J. Butterfield Exceptionally preserved crustaceans from western Canada reveal a cryptic Cambrian radiation Proc. Natl. Acad. Sci. USA 109 2012 1589 1594
35. L.D. Bromham, and M.D. Hendy Can fast early rates reconcile molecular dates with the Cambrian explosion? Proc. Biol. Sci. 267 2000 1041 1047
36. T. Vavouri, and B. Lehner Conserved noncoding elements and the evolution of animal body plans Bioessays 31 2009 727 735
37. D.K. Jacobs Selector genes and the Cambrian radiation of Bilateria Proc. Natl. Acad. Sci. USA 87 1990 4406 4410
38. K.L. Sanders, and M.S.Y. Lee Arthropod molecular divergence times and the Cambrian origin of pentastomids Syst. Biodivers. 8 2010 63 74
39. D.N. Reznick, F.H. Shaw, F.H. Rodd, and R.G. Shaw Evaluation of the rate of evolution in natural populations of guppies (Poecilia reticulata) Science 275 1997 1934 1937
40. N.G. Crawford, B.C. Faircloth, J.E. McCormack, R.T. Brumfield, K. Winker, and T.C. Glenn More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs Biol. Lett. 8 2012 783 786
41. F. Zhao, M. Zhu, and S. Hu Community structure and composition of the Cambrian Chengjiang biota Sci. China. Earth Sci. 53 2010 1784 1799
42. G.T. Lloyd, S.C. Wang, and S.L. Brusatte Identifying heterogeneity in rates of morphological evolution: discrete character change in the evolution of lungfish (Sarcopterygii; Dipnoi) Evolution 66 2012 330 348