-
1
-
-
68249102788
-
CRISPR-based adaptive and heritable immunity in prokaryotes
-
J. van der Oost, M.M. Jore, E.R. Westra, M. Lundgren, and S.J. Brouns CRISPR-based adaptive and heritable immunity in prokaryotes Trends Biochem. Sci. 34 2009 401 407
-
(2009)
Trends Biochem. Sci.
, vol.34
, pp. 401-407
-
-
Van Der Oost, J.1
Jore, M.M.2
Westra, E.R.3
Lundgren, M.4
Brouns, S.J.5
-
2
-
-
73649130281
-
The CRISPR system: Small RNA-guided defense in bacteria and archaea
-
F.V. Karginov, and G.J. Hannon The CRISPR system: small RNA-guided defense in bacteria and archaea Mol. Cell 37 2010 7 19
-
(2010)
Mol. Cell
, vol.37
, pp. 7-19
-
-
Karginov, F.V.1
Hannon, G.J.2
-
3
-
-
77249170201
-
CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
-
L.A. Marraffini, and E.J. Sontheimer CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea Nat. Rev., Genet. 11 2010 181 190
-
(2010)
Nat. Rev., Genet.
, vol.11
, pp. 181-190
-
-
Marraffini, L.A.1
Sontheimer, E.J.2
-
4
-
-
84857097177
-
RNA-guided genetic silencing systems in bacteria and archaea
-
B. Wiedenheft, S.H. Sternberg, and J.A. Doudna RNA-guided genetic silencing systems in bacteria and archaea Nature 482 2012 331 338
-
(2012)
Nature
, vol.482
, pp. 331-338
-
-
Wiedenheft, B.1
Sternberg, S.H.2
Doudna, J.A.3
-
5
-
-
23844505202
-
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
-
A. Bolotin, B. Quinquis, A. Sorokin, and S.D. Ehrlich Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin Microbiology 151 2005 2551 2561
-
(2005)
Microbiology
, vol.151
, pp. 2551-2561
-
-
Bolotin, A.1
Quinquis, B.2
Sorokin, A.3
Ehrlich, S.D.4
-
6
-
-
16444385662
-
Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
-
F.J. Mojica, C. Diez-Villasenor, J. Garcia-Martinez, and E. Soria Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements J. Mol. Evol. 60 2005 174 182
-
(2005)
J. Mol. Evol.
, vol.60
, pp. 174-182
-
-
Mojica, F.J.1
Diez-Villasenor, C.2
Garcia-Martinez, J.3
Soria, E.4
-
7
-
-
15844390228
-
CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
-
C. Pourcel, G. Salvignol, and G. Vergnaud CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies Microbiology 151 2005 653 663
-
(2005)
Microbiology
, vol.151
, pp. 653-663
-
-
Pourcel, C.1
Salvignol, G.2
Vergnaud, G.3
-
8
-
-
34248400310
-
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
-
D.H. Haft, J. Selengut, E.F. Mongodin, and K.E. Nelson A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes PLoS Comput. Biol. 1 2005 e60
-
(2005)
PLoS Comput. Biol.
, vol.1
, pp. 60
-
-
Haft, D.H.1
Selengut, J.2
Mongodin, E.F.3
Nelson, K.E.4
-
9
-
-
34248374277
-
A putative RNA-interference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
-
K.S. Makarova, N.V. Grishin, S.A. Shabalina, Y.I. Wolf, and E.V. Koonin A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action Biol. Direct 1 2006 7
-
(2006)
Biol. Direct
, vol.1
, pp. 7
-
-
Makarova, K.S.1
Grishin, N.V.2
Shabalina, S.A.3
Wolf, Y.I.4
Koonin, E.V.5
-
10
-
-
79956157571
-
Evolution and classification of the CRISPR-Cas systems
-
K.S. Makarova, D.H. Haft, R. Barrangou, S.J. Brouns, E. Charpentier, and P. Horvath Evolution and classification of the CRISPR-Cas systems Nat. Rev., Microbiol. 9 2011 467 477
-
(2011)
Nat. Rev., Microbiol.
, vol.9
, pp. 467-477
-
-
Makarova, K.S.1
Haft, D.H.2
Barrangou, R.3
Brouns, S.J.4
Charpentier, E.5
Horvath, P.6
-
11
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
S.J. Brouns, M.M. Jore, M. Lundgren, E.R. Westra, R.J. Slijkhuis, and A.P. Snijders Small CRISPR RNAs guide antiviral defense in prokaryotes Science 321 2008 960 964
-
(2008)
Science
, vol.321
, pp. 960-964
-
-
Brouns, S.J.1
Jore, M.M.2
Lundgren, M.3
Westra, E.R.4
Slijkhuis, R.J.5
Snijders, A.P.6
-
12
-
-
58049191229
-
Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
-
J. Carte, R. Wang, H. Li, R.M. Terns, and M.P. Terns Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes Genes Dev. 22 2008 3489 3496
-
(2008)
Genes Dev.
, vol.22
, pp. 3489-3496
-
-
Carte, J.1
Wang, R.2
Li, H.3
Terns, R.M.4
Terns, M.P.5
-
13
-
-
77956498326
-
Sequence- and structure-specific RNA processing by a CRISPR endonuclease
-
R.E. Haurwitz, M. Jinek, B. Wiedenheft, K. Zhou, and J.A. Doudna Sequence- and structure-specific RNA processing by a CRISPR endonuclease Science 329 2010 1355 1358
-
(2010)
Science
, vol.329
, pp. 1355-1358
-
-
Haurwitz, R.E.1
Jinek, M.2
Wiedenheft, B.3
Zhou, K.4
Doudna, J.A.5
-
14
-
-
84862190458
-
Csy4 relies on an unusual catalytic dyad to position and cleave CRISPR RNA
-
R.E. Haurwitz, S.H. Sternberg, and J.A. Doudna Csy4 relies on an unusual catalytic dyad to position and cleave CRISPR RNA EMBO J. 31 2012 2824 2832
-
(2012)
EMBO J.
, vol.31
, pp. 2824-2832
-
-
Haurwitz, R.E.1
Sternberg, S.H.2
Doudna, J.A.3
-
15
-
-
79958825675
-
An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3
-
D.G. Sashital, M. Jinek, and J.A. Doudna An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3 Nat. Struct. Mol. Biol. 18 2011 680 687
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 680-687
-
-
Sashital, D.G.1
Jinek, M.2
Doudna, J.A.3
-
16
-
-
79958848350
-
Recognition and maturation of effector RNAs in a CRISPR interference pathway
-
E.M. Gesner, M.J. Schellenberg, E.L. Garside, M.M. George, and A.M. Macmillan Recognition and maturation of effector RNAs in a CRISPR interference pathway Nat. Struct. Mol. Biol. 18 2011 688 692
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 688-692
-
-
Gesner, E.M.1
Schellenberg, M.J.2
Garside, E.L.3
George, M.M.4
Macmillan, A.M.5
-
17
-
-
78149355930
-
Binding and cleavage of CRISPR RNA by Cas6
-
J. Carte, N.T. Pfister, M.M. Compton, R.M. Terns, and M.P. Terns Binding and cleavage of CRISPR RNA by Cas6 RNA 16 2010 2181 2188
-
(2010)
RNA
, vol.16
, pp. 2181-2188
-
-
Carte, J.1
Pfister, N.T.2
Compton, M.M.3
Terns, R.M.4
Terns, M.P.5
-
18
-
-
79551694059
-
Interaction of the Cas6 riboendonuclease with CRISPR RNAs: Recognition and cleavage
-
R. Wang, G. Preamplume, M.P. Terns, R.M. Terns, and H. Li Interaction of the Cas6 riboendonuclease with CRISPR RNAs: recognition and cleavage Structure 19 2011 257 264
-
(2011)
Structure
, vol.19
, pp. 257-264
-
-
Wang, R.1
Preamplume, G.2
Terns, M.P.3
Terns, R.M.4
Li, H.5
-
19
-
-
79960554003
-
Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems
-
K.S. Makarova, L. Aravind, Y.I. Wolf, and E.V. Koonin Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems Biol. Direct 6 2011 38
-
(2011)
Biol. Direct
, vol.6
, pp. 38
-
-
Makarova, K.S.1
Aravind, L.2
Wolf, Y.I.3
Koonin, E.V.4
-
20
-
-
79953250082
-
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
-
E. Deltcheva, K. Chylinski, C.M. Sharma, K. Gonzales, Y. Chao, and Z.A. Pirzada CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III Nature 471 2011 602 607
-
(2011)
Nature
, vol.471
, pp. 602-607
-
-
Deltcheva, E.1
Chylinski, K.2
Sharma, C.M.3
Gonzales, K.4
Chao, Y.5
Pirzada, Z.A.6
-
21
-
-
84865704094
-
Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system
-
K.H. Nam, C. Haitjema, X. Liu, F. Ding, H. Wang, M.P. Delisa, and A. Ke Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system Structure 20 2012 1574 1584
-
(2012)
Structure
, vol.20
, pp. 1574-1584
-
-
Nam, K.H.1
Haitjema, C.2
Liu, X.3
Ding, F.4
Wang, H.5
Delisa, M.P.6
Ke, A.7
-
22
-
-
84867678349
-
Cas5d processes pre-crRNA and is a member of a larger family of CRISPR RNA endonucleases
-
E.L. Garside, M.J. Schellenberg, E.M. Gesner, J.B. Bonanno, J.M. Sauder, and S.K. Burley Cas5d processes pre-crRNA and is a member of a larger family of CRISPR RNA endonucleases RNA 18 2012 2020 2028
-
(2012)
RNA
, vol.18
, pp. 2020-2028
-
-
Garside, E.L.1
Schellenberg, M.J.2
Gesner, E.M.3
Bonanno, J.B.4
Sauder, J.M.5
Burley, S.K.6
-
23
-
-
79958754524
-
Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE)
-
N.G. Lintner, M. Kerou, S.K. Brumfield, S. Graham, H. Liu, and J.H. Naismith Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE) J. Biol. Chem. 286 2011 21643 21656
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 21643-21656
-
-
Lintner, N.G.1
Kerou, M.2
Brumfield, S.K.3
Graham, S.4
Liu, H.5
Naismith, J.H.6
-
24
-
-
79955574254
-
Structural basis for CRISPR RNA-guided DNA recognition by Cascade
-
M.M. Jore, M. Lundgren, E. van Duijn, J.B. Bultema, E.R. Westra, and S.P. Waghmare Structural basis for CRISPR RNA-guided DNA recognition by Cascade Nat. Struct. Mol. Biol. 18 2011 529 536
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 529-536
-
-
Jore, M.M.1
Lundgren, M.2
Van Duijn, E.3
Bultema, J.B.4
Westra, E.R.5
Waghmare, S.P.6
-
25
-
-
80053169737
-
Structures of the RNA-guided surveillance complex from a bacterial immune system
-
B. Wiedenheft, G.C. Lander, K. Zhou, M.M. Jore, S.J. Brouns, and J. van der Oost Structures of the RNA-guided surveillance complex from a bacterial immune system Nature 477 2011 486 489
-
(2011)
Nature
, vol.477
, pp. 486-489
-
-
Wiedenheft, B.1
Lander, G.C.2
Zhou, K.3
Jore, M.M.4
Brouns, S.J.5
Van Der Oost, J.6
-
26
-
-
80052213049
-
2 +-dependent double-stranded DNA binding activity
-
2 +-dependent double-stranded DNA binding activity J. Biol. Chem. 286 2011 30759 30768
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 30759-30768
-
-
Nam, K.H.1
Kurinov, I.2
Ke, A.3
-
27
-
-
84859145768
-
Crystal structure of Streptococcus pyogenes Csn2 reveals calcium-dependent conformational changes in its tertiary and quaternary structure
-
Y. Koo, D.K. Jung, and E. Bae Crystal structure of Streptococcus pyogenes Csn2 reveals calcium-dependent conformational changes in its tertiary and quaternary structure PLoS One 7 2012 e33401
-
(2012)
PLoS One
, vol.7
, pp. 33401
-
-
Koo, Y.1
Jung, D.K.2
Bae, E.3
-
28
-
-
84861479896
-
The crystal structure of the CRISPR-associated protein Csn2 from Streptococcus agalactiae
-
P. Ellinger, Z. Arslan, R. Wurm, B. Tschapek, C. MacKenzie, and K. Pfeffer The crystal structure of the CRISPR-associated protein Csn2 from Streptococcus agalactiae J. Struct. Biol. 178 2012 350 362
-
(2012)
J. Struct. Biol.
, vol.178
, pp. 350-362
-
-
Ellinger, P.1
Arslan, Z.2
Wurm, R.3
Tschapek, B.4
Mackenzie, C.5
Pfeffer, K.6
-
29
-
-
84867218972
-
Identification, structural, and biochemical characterization of a group of large Csn2 proteins involved in CRISPR-mediated bacterial immunity
-
K.H. Lee, S.G. Lee, K. Eun Lee, H. Jeon, H. Robinson, and B.H. Oh Identification, structural, and biochemical characterization of a group of large Csn2 proteins involved in CRISPR-mediated bacterial immunity Proteins 80 2012 2573 2582
-
(2012)
Proteins
, vol.80
, pp. 2573-2582
-
-
Lee, K.H.1
Lee, S.G.2
Eun Lee, K.3
Jeon, H.4
Robinson, H.5
Oh, B.H.6
-
30
-
-
0035836659
-
Complete genome sequence of an M1 strain of Streptococcus pyogenes
-
J.J. Ferretti, W.M. McShan, D. Ajdic, D.J. Savic, G. Savic, and K. Lyon Complete genome sequence of an M1 strain of Streptococcus pyogenes Proc. Natl Acad. Sci. USA 98 2001 4658 4663
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 4658-4663
-
-
Ferretti, J.J.1
McShan, W.M.2
Ajdic, D.3
Savic, D.J.4
Savic, G.5
Lyon, K.6
-
31
-
-
34250662138
-
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
-
I. Grissa, G. Vergnaud, and C. Pourcel The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats BMC Bioinformatics 8 2007 172
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 172
-
-
Grissa, I.1
Vergnaud, G.2
Pourcel, C.3
-
32
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Z. Otwinowski, and W. Minor Processing of X-ray diffraction data collected in oscillation mode Methods Enzymol. 276 1997 307 326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
33
-
-
34447508216
-
Phaser crystallographic software
-
A.J. McCoy, R.W. Grosse-Kunstleve, P.D. Adams, M.D. Winn, L.C. Storoni, and R.J. Read Phaser crystallographic software J. Appl. Crystallogr. 40 2007 658 674
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
36
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
V.B. Chen, W.B. Arendall 3rd, J.J. Headd, D.A. Keedy, R.M. Immormino, and G.J. Kapral MolProbity: all-atom structure validation for macromolecular crystallography Acta Crystallogr., Sect. D: Biol. Crystallogr. 66 2010 12 21
-
(2010)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall III, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
-
37
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
38
-
-
0032961270
-
ESPript: Analysis of multiple sequence alignments in PostScript
-
P. Gouet, E. Courcelle, D.I. Stuart, and F. Metoz ESPript: analysis of multiple sequence alignments in PostScript Bioinformatics 15 1999 305 308
-
(1999)
Bioinformatics
, vol.15
, pp. 305-308
-
-
Gouet, P.1
Courcelle, E.2
Stuart, D.I.3
Metoz, F.4
-
39
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
N.A. Baker, D. Sept, S. Joseph, M.J. Holst, and J.A. McCammon Electrostatics of nanosystems: application to microtubules and the ribosome Proc. Natl Acad. Sci. USA 98 2001 10037 10041
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
40
-
-
0033954256
-
The Protein Data Bank
-
H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, and H. Weissig The Protein Data Bank Nucleic Acids Res. 28 2000 235 242 Technology and Technology
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
|