-
1
-
-
79959349283
-
Genome-wide remodeling of the epigenetic landscape during myogenic differentiation
-
Asp P, BlumR, Vethantham V, Parisi F, MicsinaiM, Cheng J, Bowman C, Kluger Y, Dynlacht BD (2011) Genome-wide remodeling of the epigenetic landscape during myogenic differentiation. Proc Natl Acad Sci USA 108: E149-E158
-
(2011)
Proc Natl Acad Sci USA
, vol.108
-
-
Asp, P.1
Blumr Vethantham, V.2
Parisi, F.3
Micsinaim Cheng, J.4
Bowman, C.5
Kluger, Y.6
Dynlacht, B.D.7
-
2
-
-
80052394416
-
Noncoding transcripts in sense and antisense orientation regulate the epigenetic state of ribosomal RNA genes
-
Bierhoff H, Schmitz K, Maass F, Ye J, Grummt I (2011) Noncoding transcripts in sense and antisense orientation regulate the epigenetic state of ribosomal RNA genes. Cold Spring Harb Symp Quant Biol 75: 357-364
-
(2011)
Cold Spring Harb Symp Quant Biol
, vol.75
, pp. 357-364
-
-
Bierhoff, H.1
Schmitz, K.2
Maass, F.3
Ye, J.4
Grummt, I.5
-
3
-
-
84859452677
-
Yin Yang 1 deficiency in skeletal muscle protects against rapamycininduced diabetic-like symptoms through activation of insulin/IGF signaling
-
Blattler SM, Cunningham JT, Verdeguer F, Chim H, Haas W, Liu H, Romanino K, Ruegg MA, Gygi SP, Shi Y, Puigserver P (2012) Yin Yang 1 deficiency in skeletal muscle protects against rapamycininduced diabetic-like symptoms through activation of insulin/IGF signaling. Cell Metab 15: 505-517
-
(2012)
Cell Metab
, vol.15
, pp. 505-517
-
-
Blattler, S.M.1
Cunningham, J.T.2
Verdeguer, F.3
Chim, H.4
Haas, W.5
Liu, H.6
Romanino, K.7
Ruegg, M.A.8
Gygi, S.P.9
Shi, Y.10
Puigserver, P.11
-
4
-
-
84875418596
-
Noncoding RNA and Polycomb recruitment
-
Brockdorff N (2013) Noncoding RNA and Polycomb recruitment. RNA 19: 429-442
-
(2013)
RNA
, vol.19
, pp. 429-442
-
-
Brockdorff, N.1
-
5
-
-
33748419667
-
Myogenic progenitor cells and skeletal myogenesis in vertebrates
-
Buckingham M (2006) Myogenic progenitor cells and skeletal myogenesis in vertebrates. Curr Opin Genet Dev 16: 525-532
-
(2006)
Curr Opin Genet Dev
, vol.16
, pp. 525-532
-
-
Buckingham, M.1
-
6
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL (2011) Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 25: 1915-1927
-
(2011)
Genes Dev
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
Trapnell, C.2
Goff, L.3
Koziol, M.4
Tazon-Vega, B.5
Regev, A.6
Rinn, J.L.7
-
7
-
-
33646362551
-
Systematic identification of human mitochondrial disease genes through integrative genomics
-
Calvo S, Jain M, Xie X, Sheth SA, Chang B, Goldberger OA, Spinazzola A, Zeviani M, Carr SA, Mootha VK (2006) Systematic identification of human mitochondrial disease genes through integrative genomics. Nat Genet 38: 576-582
-
(2006)
Nat Genet
, vol.38
, pp. 576-582
-
-
Calvo, S.1
Jain, M.2
Xie, X.3
Sheth, S.A.4
Chang, B.5
Goldberger, O.A.6
Spinazzola, A.7
Zeviani, M.8
Carr, S.A.9
Mootha, V.K.10
-
8
-
-
77951935861
-
Genome-wide MyoD binding in skeletal muscle cells: A potential for broad cellular reprogramming
-
Cao Y, Yao Z, Sarkar D, Lawrence M, Sanchez GJ, Parker MH, MacQuarrie KL, Davison J, Morgan MT, Ruzzo WL, Gentleman RC, Tapscott SJ (2010) Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming. Dev Cell 18: 662-674
-
(2010)
Dev Cell
, vol.18
, pp. 662-674
-
-
Cao, Y.1
Yao, Z.2
Sarkar, D.3
Lawrence, M.4
Sanchez, G.J.5
Parker, M.H.6
MacQuarrie, K.L.7
Davison, J.8
Morgan, M.T.9
Ruzzo, W.L.10
Gentleman, R.C.11
Tapscott, S.J.12
-
9
-
-
7544230144
-
The Polycomb Ezh2 methyltransferase regulates muscle gene expression and skeletal muscle differentiation
-
Caretti G, Di Padova M, Micales B, Lyons GE, Sartorelli V (2004) The Polycomb Ezh2 methyltransferase regulates muscle gene expression and skeletal muscle differentiation. Genes Dev 18: 2627-2638
-
(2004)
Genes Dev
, vol.18
, pp. 2627-2638
-
-
Caretti, G.1
Di Padova, M.2
Micales, B.3
Lyons, G.E.4
Sartorelli, V.5
-
10
-
-
80054715378
-
A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA
-
Cesana M, Cacchiarelli D, Legnini I, Santini T, Sthandier O, Chinappi M, Tramontano A, Bozzoni I (2011) A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. Cell 147: 358-369
-
(2011)
Cell
, vol.147
, pp. 358-369
-
-
Cesana, M.1
Cacchiarelli, D.2
Legnini, I.3
Santini, T.4
Sthandier, O.5
Chinappi, M.6
Tramontano, A.7
Bozzoni, I.8
-
11
-
-
36749081539
-
MTOR controls mitochondrial oxidative function through a YY1-PGC-1alpha transcriptional complex
-
Cunningham JT, Rodgers JT, Arlow DH, Vazquez F, Mootha VK, Puigserver P (2007) mTOR controls mitochondrial oxidative function through a YY1-PGC-1alpha transcriptional complex. Nature 450: 736-740
-
(2007)
Nature
, vol.450
, pp. 736-740
-
-
Cunningham, J.T.1
Rodgers, J.T.2
Arlow, D.H.3
Vazquez, F.4
Mootha, V.K.5
Puigserver, P.6
-
12
-
-
77956282766
-
CXCR4/YY1 inhibition impairs VEGF network and angiogenesis during malignancy
-
de Nigris F, Crudele V, Giovane A, Casamassimi A, Giordano A, Garban HJ, Cacciatore F, Pentimalli F, Marquez-Garban DC, Petrillo A, Cito L, Sommese L, Fiore A, Petrillo M, Siani A, Barbieri A, Arra C, Rengo F, Hayashi T, Al-Omran M et al (2010) CXCR4/YY1 inhibition impairs VEGF network and angiogenesis during malignancy. Proc Natl Acad Sci USA 107: 14484-14489
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 14484-14489
-
-
De Nigris, F.1
Crudele, V.2
Giovane, A.3
Casamassimi, A.4
Giordano, A.5
Garban, H.J.6
Cacciatore, F.7
Pentimalli, F.8
Marquez-Garban, D.C.9
Petrillo, A.10
Cito, L.11
Sommese, L.12
Fiore, A.13
Petrillo, M.14
Siani, A.15
Barbieri, A.16
Arra, C.17
Rengo, F.18
Hayashi, T.19
Al-Omran, M.20
more..
-
13
-
-
77952908743
-
A large fraction of extragenic RNA pol II transcription sites overlap enhancers
-
De Santa F, Barozzi I, Mietton F, Ghisletti S, Polletti S, Tusi BK, Muller H, Ragoussis J, Wei CL, Natoli G (2010) A large fraction of extragenic RNA pol II transcription sites overlap enhancers. PLoS Biol 8: e1000384
-
(2010)
PLoS Biol
, vol.8
-
-
De Santa, F.1
Barozzi, I.2
Mietton, F.3
Ghisletti, S.4
Polletti, S.5
Tusi, B.K.6
Muller, H.7
Ragoussis, J.8
Wei, C.L.9
Natoli, G.10
-
14
-
-
79952274283
-
Yin Yang 1: A multifaceted protein beyond a transcription factor
-
Deng Z, Cao P, Wan MM, Sui G (2010) Yin Yang 1: a multifaceted protein beyond a transcription factor. Transcription 1: 81-84
-
(2010)
Transcription
, vol.1
, pp. 81-84
-
-
Deng, Z.1
Cao, P.2
Wan, M.M.3
Sui, G.4
-
15
-
-
84864627155
-
Pax3/7BP is a Pax7-and Pax3-binding protein that regulates the proliferation of muscle precursor cells by an epigenetic mechanism
-
Diao Y, Guo X, Li Y, Sun K, Lu L, Jiang L, Fu X, Zhu H, Sun H, Wang H, Wu Z (2012) Pax3/7BP is a Pax7-and Pax3-binding protein that regulates the proliferation of muscle precursor cells by an epigenetic mechanism. Cell Stem Cell 11: 231-241
-
(2012)
Cell Stem Cell
, vol.11
, pp. 231-241
-
-
Diao, Y.1
Guo, X.2
Li, Y.3
Sun, K.4
Lu, L.5
Jiang, L.6
Fu, X.7
Zhu, H.8
Sun, H.9
Wang, H.10
Wu, Z.11
-
16
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
17
-
-
33644507479
-
Transcription factor YY1: Structure, function, and therapeutic implications in cancer biology
-
Gordon S, Akopyan G, Garban H, Bonavida B (2006) Transcription factor YY1: structure, function, and therapeutic implications in cancer biology. Oncogene 25: 1125-1142
-
(2006)
Oncogene
, vol.25
, pp. 1125-1142
-
-
Gordon, S.1
Akopyan, G.2
Garban, H.3
Bonavida, B.4
-
18
-
-
84875212339
-
Essential and unexpected role of Yin Yang 1 to promote mesodermal cardiac differentiation
-
Gregoire S, Karra R, Passer D, Deutsch MA, Krane M, Feistritzer R, Sturzu A, Domian I, Saga Y, Wu SM (2013) Essential and unexpected role of Yin Yang 1 to promote mesodermal cardiac differentiation. Circ Res 112: 900-910
-
(2013)
Circ Res
, vol.112
, pp. 900-910
-
-
Gregoire, S.1
Karra, R.2
Passer, D.3
Deutsch, M.A.4
Krane, M.5
Feistritzer, R.6
Sturzu, A.7
Domian, I.8
Saga, Y.9
Wu, S.M.10
-
20
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta RA, Shah N,Wang KC, Kim J, Horlings HM,Wong DJ, Tsai MC, Hung T, Argani P, Rinn JL, Wang Y, Brzoska P, Kong B, Li R, West RB, van de Vijver MJ, Sukumar S, Chang HY (2010) Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 464: 1071-1076
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
Wong, D.J.6
Tsai, M.C.7
Hung, T.8
Argani, P.9
Rinn, J.L.10
Wang, Y.11
Brzoska, P.12
Kong, B.13
Li, R.14
West, R.B.15
Van De Vijver, M.J.16
Sukumar, S.17
Chang, H.Y.18
-
21
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
GuttmanM, Amit I, Garber M, French C, LinMF, Feldser D, HuarteM, Zuk O, Carey BW, Cassady JP, Cabili MN, Jaenisch R, Mikkelsen TS, Jacks T, Hacohen N, Bernstein BE, Kellis M, Regev A, Rinn JL, Lander ES (2009) Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 458: 223-227
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
Huarte, M.7
Zuk, O.8
Carey, B.W.9
Cassady, J.P.10
Cabili, M.N.11
Jaenisch, R.12
Mikkelsen, T.S.13
Jacks, T.14
Hacohen, N.15
Bernstein, B.E.16
Kellis, M.17
Regev, A.18
Rinn, J.L.19
Lander, E.S.20
more..
-
22
-
-
80052869283
-
LincRNAs act in the circuitry controlling pluripotency and differentiation
-
GuttmanM, Donaghey J, Carey BW, GarberM, Grenier JK, Munson G, Young G, Lucas AB, Ach R, Bruhn L, Yang X, Amit I, Meissner A, Regev A, Rinn JL, Root DE, Lander ES (2011) lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 477: 295-300
-
(2011)
Nature
, vol.477
, pp. 295-300
-
-
Guttmanm Donaghey, J.1
Carey, B.W.2
Garberm Grenier, J.K.3
Munson, G.4
Young, G.5
Lucas, A.B.6
Ach, R.7
Bruhn, L.8
Yang, X.9
Amit, I.10
Meissner, A.11
Regev, A.12
Rinn, J.L.13
Root, D.E.14
Lander, E.S.15
-
23
-
-
77952148742
-
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
-
Guttman M, GarberM, Levin JZ, Donaghey J, Robinson J, Adiconis X, Fan L, Koziol MJ, Gnirke A, Nusbaum C, Rinn JL, Lander ES, Regev A (2010) Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat Biotechnol 28: 503-510
-
(2010)
Nat Biotechnol
, vol.28
, pp. 503-510
-
-
Guttman, M.1
Garberm Levin, J.Z.2
Donaghey, J.3
Robinson, J.4
Adiconis, X.5
Fan, L.6
Koziol, M.J.7
Gnirke, A.8
Nusbaum, C.9
Rinn, J.L.10
Lander, E.S.11
Regev, A.12
-
24
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
-
Huarte M, Guttman M, Feldser D, Garber M, Koziol MJ, Kenzelmann-Broz D, Khalil AM, Zuk O, Amit I, Rabani M, Attardi LD, Regev A, Lander ES, Jacks T, Rinn JL (2010) A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell 142: 409-419
-
(2010)
Cell
, vol.142
, pp. 409-419
-
-
Huarte, M.1
Guttman, M.2
Feldser, D.3
Garber, M.4
Koziol, M.J.5
Kenzelmann-Broz, D.6
Khalil, A.M.7
Zuk, O.8
Amit, I.9
Rabani, M.10
Attardi, L.D.11
Regev, A.12
Lander, E.S.13
Jacks, T.14
Rinn, J.L.15
-
25
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
Khalil AM, Guttman M, Huarte M, Garber M, Raj A, RiveaMorales D, Thomas K, Presser A, Bernstein BE, van Oudenaarden A, Regev A, Lander ES, Rinn JL (2009) Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci USA 106: 11667-11672
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
Riveamorales, D.6
Thomas, K.7
Presser, A.8
Bernstein, B.E.9
Van Oudenaarden, A.10
Regev, A.11
Lander, E.S.12
Rinn, J.L.13
-
26
-
-
84865777819
-
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
-
Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, Gerstein M, Gertz J, Hartemink AJ, Hoffman MM, Iyer VR et al (2012) ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Res 22: 1813-1831
-
(2012)
Genome Res
, vol.22
, pp. 1813-1831
-
-
Landt, S.G.1
Marinov, G.K.2
Kundaje, A.3
Kheradpour, P.4
Pauli, F.5
Batzoglou, S.6
Bernstein, B.E.7
Bickel, P.8
Brown, J.B.9
Cayting, P.10
Chen, Y.11
Desalvo, G.12
Epstein, C.13
Fisher-Aylor, K.I.14
Euskirchen, G.15
Gerstein, M.16
Gertz, J.17
Hartemink, A.J.18
Hoffman, M.M.19
Iyer, V.R.20
more..
-
28
-
-
67650711615
-
SOAP2: An improved ultrafast tool for short read alignment
-
Li R, Yu C, Li Y, Lam TW, Yiu SM, Kristiansen K, Wang J (2009) SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 25: 1966-1967
-
(2009)
Bioinformatics
, vol.25
, pp. 1966-1967
-
-
Li, R.1
Yu, C.2
Li, Y.3
Lam, T.W.4
Yiu, S.M.5
Kristiansen, K.6
Wang, J.7
-
29
-
-
78649467088
-
Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells
-
Loewer S, Cabili MN, Guttman M, Loh YH, Thomas K, Park IH, Garber M, Curran M, Onder T, Agarwal S, Manos PD, Datta S, Lander ES, Schlaeger TM, Daley GQ, Rinn JL (2010) Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells. Nat Genet 42: 1113-1117
-
(2010)
Nat Genet
, vol.42
, pp. 1113-1117
-
-
Loewer, S.1
Cabili, M.N.2
Guttman, M.3
Loh, Y.H.4
Thomas, K.5
Park, I.H.6
Garber, M.7
Curran, M.8
Onder, T.9
Agarwal, S.10
Manos, P.D.11
Datta, S.12
Lander, E.S.13
Schlaeger, T.M.14
Daley, G.Q.15
Rinn, J.L.16
-
30
-
-
84863012238
-
A novel YY1-miR-1 regulatory circuit in skeletal myogenesis revealed by genome-wide prediction of YY1-miRNA network
-
Lu L, Zhou L, Chen EZ, Sun K, Jiang P, Wang L, Su X, Sun H, Wang H (2012) A novel YY1-miR-1 regulatory circuit in skeletal myogenesis revealed by genome-wide prediction of YY1-miRNA network. PLoS One 7: e27596
-
(2012)
PLoS One
, vol.7
-
-
Lu, L.1
Zhou, L.2
Chen, E.Z.3
Sun, K.4
Jiang, P.5
Wang, L.6
Su, X.7
Sun, H.8
Wang, H.9
-
31
-
-
78650684739
-
GC-rich sequence elements recruit PRC2 in mammalian ES cells
-
Mendenhall EM, Koche RP, Truong T, Zhou VW, Issac B, Chi AS, Ku M, Bernstein BE (2010) GC-rich sequence elements recruit PRC2 in mammalian ES cells. PLoS Genet 6: e1001244
-
(2010)
PLoS Genet
, vol.6
-
-
Mendenhall, E.M.1
Koche, R.P.2
Truong, T.3
Zhou, V.W.4
Issac, B.5
Chi, A.S.6
Ku, M.7
Bernstein, B.E.8
-
32
-
-
84856237597
-
Polycomb protein Ezh1 promotes RNA polymerase II elongation
-
Mousavi K, Zare H, Wang AH, Sartorelli V (2012) Polycomb protein Ezh1 promotes RNA polymerase II elongation. Mol Cell 45: 255-262
-
(2012)
Mol Cell
, vol.45
, pp. 255-262
-
-
Mousavi, K.1
Zare, H.2
Wang, A.H.3
Sartorelli, V.4
-
33
-
-
77957243921
-
Long noncoding RNAs with enhancer-like function in human cells
-
Orom UA, Derrien T, Beringer M, Gumireddy K, Gardini A, Bussotti G, Lai F, Zytnicki M, Notredame C, Huang Q, Guigo R, Shiekhattar R (2010) Long noncoding RNAs with enhancer-like function in human cells. Cell 143: 46-58
-
(2010)
Cell
, vol.143
, pp. 46-58
-
-
Orom, U.A.1
Derrien, T.2
Beringer, M.3
Gumireddy, K.4
Gardini, A.5
Bussotti, G.6
Lai, F.7
Zytnicki, M.8
Notredame, C.9
Huang, Q.10
Guigo, R.11
Shiekhattar, R.12
-
34
-
-
77957357566
-
TNF/p38alpha/polycomb signaling to Pax7 locus in satellite cells links inflammation to the epigenetic control of muscle regeneration
-
Palacios D, Mozzetta C, Consalvi S, Caretti G, Saccone V, Proserpio V, Marquez VE, Valente S, Mai A, Forcales SV, Sartorelli V, Puri PL (2010) TNF/p38alpha/polycomb signaling to Pax7 locus in satellite cells links inflammation to the epigenetic control of muscle regeneration. Cell Stem Cell 7: 455-469
-
(2010)
Cell Stem Cell
, vol.7
, pp. 455-469
-
-
Palacios, D.1
Mozzetta, C.2
Consalvi, S.3
Caretti, G.4
Saccone, V.5
Proserpio, V.6
Marquez, V.E.7
Valente, S.8
Mai, A.9
Forcales, S.V.10
Sartorelli, V.11
Puri, P.L.12
-
35
-
-
84255196924
-
A new 'Linc' between noncoding RNAs and blood development
-
Paralkar VR, Weiss MJ (2011) A new 'Linc' between noncoding RNAs and blood development. Genes Dev 25: 2555-2558
-
(2011)
Genes Dev
, vol.25
, pp. 2555-2558
-
-
Paralkar, V.R.1
Weiss, M.J.2
-
37
-
-
79961202865
-
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression
-
Prensner JR, Iyer MK, Balbin OA, Dhanasekaran SM, Cao Q, Brenner JC, Laxman B, Asangani IA, Grasso CS, Kominsky HD, Cao X, Jing X, Wang X, Siddiqui J, Wei JT, Robinson D, Iyer HK, Palanisamy N, Maher CA, Chinnaiyan AM (2011) Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression. Nat Biotechnol 29: 742-749
-
(2011)
Nat Biotechnol
, vol.29
, pp. 742-749
-
-
Prensner, J.R.1
Iyer, M.K.2
Balbin, O.A.3
Dhanasekaran, S.M.4
Cao, Q.5
Brenner, J.C.6
Laxman, B.7
Asangani, I.A.8
Grasso, C.S.9
Kominsky, H.D.10
Cao, X.11
Jing, X.12
Wang, X.13
Siddiqui, J.14
Wei, J.T.15
Robinson, D.16
Iyer, H.K.17
Palanisamy, N.18
Maher, C.A.19
Chinnaiyan, A.M.20
more..
-
38
-
-
0033952368
-
The molecular regulation of myogenesis
-
Sabourin LA, Rudnicki MA (2000) The molecular regulation of myogenesis. Clin Genet 57: 16-25
-
(2000)
Clin Genet
, vol.57
, pp. 16-25
-
-
Sabourin, L.A.1
Rudnicki, M.A.2
-
39
-
-
34548291568
-
The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons
-
Sone M, Hayashi T, Tarui H, Agata K, Takeichi M, Nakagawa S (2007) The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons. J Cell Sci 120: 2498-2506
-
(2007)
J Cell Sci
, vol.120
, pp. 2498-2506
-
-
Sone, M.1
Hayashi, T.2
Tarui, H.3
Agata, K.4
Takeichi, M.5
Nakagawa, S.6
-
40
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28: 511-515
-
(2010)
Nat Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
41
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
Tsai MC, Manor O, Wan Y, Mosammaparast N, Wang JK, Lan F, Shi Y, Segal E, Chang HY (2010) Long noncoding RNA as modular scaffold of histone modification complexes. Science 329: 689-693
-
(2010)
Science
, vol.329
, pp. 689-693
-
-
Tsai, M.C.1
Manor, O.2
Wan, Y.3
Mosammaparast, N.4
Wang, J.K.5
Lan, F.6
Shi, Y.7
Segal, E.8
Chang, H.Y.9
-
42
-
-
84455206362
-
Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
-
Ulitsky I, Shkumatava A, Jan CH, Sive H, Bartel DP (2011) Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell 147: 1537-1550
-
(2011)
Cell
, vol.147
, pp. 1537-1550
-
-
Ulitsky, I.1
Shkumatava, A.2
Jan, C.H.3
Sive, H.4
Bartel, D.P.5
-
43
-
-
84860370054
-
Yin Yang 1 extends the Myc-related transcription factors network in embryonic stem cells
-
Vella P, Barozzi I, Cuomo A, Bonaldi T, Pasini D (2012) Yin Yang 1 extends the Myc-related transcription factors network in embryonic stem cells. Nucleic Acids Res 40: 3403-3418
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 3403-3418
-
-
Vella, P.1
Barozzi, I.2
Cuomo, A.3
Bonaldi, T.4
Pasini, D.5
-
45
-
-
54549119169
-
NF-kappaB-YY1-miR-29 regulatory circuitry in skeletal myogenesis and rhabdomyosarcoma
-
Wang H, Garzon R, Sun H, Ladner KJ, Singh R, Dahlman J, Cheng A, Hall BM, Qualman SJ, Chandler DS, Croce CM, Guttridge DC (2008) NF-kappaB-YY1-miR-2 regulatory circuitry in skeletal myogenesis and rhabdomyosarcoma. Cancer Cell 14: 369-381
-
(2008)
Cancer Cell
, vol.14
, pp. 369-381
-
-
Wang, H.1
Garzon, R.2
Sun, H.3
Ladner, K.J.4
Singh, R.5
Dahlman, J.6
Cheng, A.7
Hall, B.M.8
Qualman, S.J.9
Chandler, D.S.10
Croce, C.M.11
Guttridge, D.C.12
-
46
-
-
34250218193
-
NF-kappaB regulation of YY1 inhibits skeletal myogenesis through transcriptional silencing of myofibrillar genes
-
Wang H, Hertlein E, Bakkar N, Sun H, Acharyya S, Wang J, Carathers M, Davuluri R, Guttridge DC (2007) NF-kappaB regulation of YY1 inhibits skeletal myogenesis through transcriptional silencing of myofibrillar genes. Mol Cell Biol 27: 4374-4387
-
(2007)
Mol Cell Biol
, vol.27
, pp. 4374-4387
-
-
Wang, H.1
Hertlein, E.2
Bakkar, N.3
Sun, H.4
Acharyya, S.5
Wang, J.6
Carathers, M.7
Davuluri, R.8
Guttridge, D.C.9
-
47
-
-
77956542998
-
CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer
-
Wang J, Liu X, Wu H, Ni P, Gu Z, Qiao Y, Chen N, Sun F, Fan Q (2010) CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer. Nucleic Acids Res 38: 5366-5383
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 5366-5383
-
-
Wang, J.1
Liu, X.2
Wu, H.3
Ni, P.4
Gu, Z.5
Qiao, Y.6
Chen, N.7
Sun, F.8
Fan, Q.9
-
48
-
-
84862812760
-
Loss of miR-29 in myoblasts contributes to dystrophic muscle pathogenesis
-
Wang L, Zhou L, Jiang P, Lu L, Chen X, Lan H, Guttridge DC, Sun H, Wang H (2012) Loss of miR-29 in myoblasts contributes to dystrophic muscle pathogenesis. Mol Ther 20: 1222-1233
-
(2012)
Mol Ther
, vol.20
, pp. 1222-1233
-
-
Wang, L.1
Zhou, L.2
Jiang, P.3
Lu, L.4
Chen, X.5
Lan, H.6
Guttridge, D.C.7
Sun, H.8
Wang, H.9
-
49
-
-
34250364559
-
Analysis of overrepresented motifs in human core promoters reveals dual regulatory roles of YY1
-
Xi H, Yu Y, Fu Y, Foley J, Halees A, Weng Z (2007) Analysis of overrepresented motifs in human core promoters reveals dual regulatory roles of YY1. Genome Res 17: 798-806
-
(2007)
Genome Res
, vol.17
, pp. 798-806
-
-
Xi, H.1
Yu, Y.2
Fu, Y.3
Foley, J.4
Halees, A.5
Weng, Z.6
-
50
-
-
82655168824
-
A lincRNA switch for embryonic stem cell fate
-
Yang L, Lin C, Rosenfeld MG (2011) A lincRNA switch for embryonic stem cell fate. Cell Res 21: 1646-1648
-
(2011)
Cell Res
, vol.21
, pp. 1646-1648
-
-
Yang, L.1
Lin, C.2
Rosenfeld, M.G.3
-
51
-
-
84880922344
-
A novel miR-193a-5p-YY1-APC regulatory axis in human endometrioid endometrial adenocarcinoma
-
Yang Y, Zhou L, Lu L,Wang L, Li X, Jiang P, Chan LK, Zhang T, Yu J, Kwong J, Cheung TH, Chung T, Mak K, Sun H, Wang H (2013) A novel miR-193a-5p-YY1-APC regulatory axis in human endometrioid endometrial adenocarcinoma. Oncogene 32: 3432-3442
-
(2013)
Oncogene
, vol.32
, pp. 3432-3442
-
-
Yang, Y.1
Zhou, L.2
Lu, L.3
Wang, L.4
Li, X.5
Jiang, P.6
Chan, L.K.7
Zhang, T.8
Yu, J.9
Kwong, J.10
Cheung, T.H.11
Chung, T.12
Mak, K.13
Sun, H.14
Wang, H.15
-
52
-
-
84864098110
-
Identification and properties of 1,119 candidate lincRNA loci in the Drosophila melanogaster genome
-
Young RS, Marques AC, Tibbit C, Haerty W, Bassett AR, Liu JL, Ponting CP (2012) Identification and properties of 1,119 candidate lincRNA loci in the Drosophila melanogaster genome. Genome Biol Evol 4: 427-442
-
(2012)
Genome Biol Evol
, vol.4
, pp. 427-442
-
-
Young, R.S.1
Marques, A.C.2
Tibbit, C.3
Haerty, W.4
Bassett, A.R.5
Liu, J.L.6
Ponting, C.P.7
-
53
-
-
53849146020
-
Modelbased analysis of ChIP-Seq (MACS)
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS (2008) Modelbased analysis of ChIP-Seq (MACS). Genome Biol 9: R137
-
(2008)
Genome Biol
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
-
54
-
-
84863389824
-
Inhibition of miR-29 by TGF-beta-Smad3 signaling through dual mechanisms promotes transdifferentiation of mouse myoblasts into myofibroblasts
-
Zhou L, Wang L, Lu L, Jiang P, Sun H, Wang H (2012a) Inhibition of miR-29 by TGF-beta-Smad3 signaling through dual mechanisms promotes transdifferentiation of mouse myoblasts into myofibroblasts. PLoS One 7: e33766
-
(2012)
PLoS One
, vol.7
-
-
Zhou, L.1
Wang, L.2
Lu, L.3
Jiang, P.4
Sun, H.5
Wang, H.6
-
55
-
-
84864078659
-
A novel target of microRNA-29, Ring1 and YY1-binding protein (Rybp), negatively regulates skeletal myogenesis
-
Zhou L, Wang L, Lu L, Jiang P, Sun H, Wang H (2012b) A novel target of microRNA-29, Ring1 and YY1-binding protein (Rybp), negatively regulates skeletal myogenesis. J Biol Chem 287: 25255-25265
-
(2012)
J Biol Chem
, vol.287
, pp. 25255-25265
-
-
Zhou, L.1
Wang, L.2
Lu, L.3
Jiang, P.4
Sun, H.5
Wang, H.6
|