-
1
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable, P.S., Ware, D., Fulton, R.S., et al. 2009, The B73 maize genome: complexity, diversity, and dynamics, Science, 326, 1112-5.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
-
2
-
-
0033867122
-
Microsatellites: Consensus and controversy
-
Chambers, G.K. and MacAvoy, E.S. 2000, Microsatellites: consensus and controversy, Comp. Biochem. Physiol. B Biochem. Mol. Biol., 126, 455-76.
-
(2000)
Comp. Biochem. Physiol. B Biochem. Mol. Biol
, vol.126
, pp. 455-476
-
-
Chambers, G.K.1
MacAvoy, E.S.2
-
3
-
-
3042782819
-
Microsatellites: Simple sequences with complex evolution
-
Ellegren, H. 2004, Microsatellites: simple sequences with complex evolution, Nat. Rev. Genet., 5, 435-45.
-
(2004)
Nat. Rev. Genet
, vol.5
, pp. 435-445
-
-
Ellegren, H.1
-
4
-
-
0031239614
-
Microsatellite marker development, mapping and applications in rice genetics and breeding
-
McCouch, S.R., Chen, X., Panaud, O., et al. 1997, Microsatellite marker development, mapping and applications in rice genetics and breeding, PlantMol. Biol., 35, 89-99.
-
(1997)
PlantMol. Biol
, vol.35
, pp. 89-99
-
-
McCouch, S.R.1
Chen, X.2
Panaud, O.3
-
5
-
-
84863393816
-
Using nextgeneration sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences
-
Zalapa, J.E., Cuevas, H., Zhu, H., et al. 2012, Using nextgeneration sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences, Am. J. Botany, 99, 193-208.
-
(2012)
Am. J. Botany
, vol.99
, pp. 193-208
-
-
Zalapa, J.E.1
Cuevas, H.2
Zhu, H.3
-
6
-
-
38049048656
-
The genome-wide determinants of human and chimpanzee microsatellite evolution
-
Kelkar, Y.D., Tyekucheva, S., Chiaromonte, F. and Makova, K.D. 2008, The genome-wide determinants of human and chimpanzee microsatellite evolution, Genome Res., 18, 30-8.
-
(2008)
Genome Res
, vol.18
, pp. 30-38
-
-
Kelkar, Y.D.1
Tyekucheva, S.2
Chiaromonte, F.3
Makova, K.D.4
-
7
-
-
11344276529
-
Genic microsatellite markers in plants: Features and applications
-
Varshney, R.K., Graner, A. and Sorrells, M.E. 2005, Genic microsatellite markers in plants: features and applications, Trends Biotechnol., 23, 48-55.
-
(2005)
Trends Biotechnol
, vol.23
, pp. 48-55
-
-
Varshney, R.K.1
Graner, A.2
Sorrells, M.E.3
-
8
-
-
70949101874
-
Molecular characterization of global maize breeding germplasm based on genome-wide single nucleotide polymorphisms
-
Lu, Y., Yan, J., Guimaraes, C.T., et al. 2009, Molecular characterization of global maize breeding germplasm based on genome-wide single nucleotide polymorphisms, Theor. Appl. Genet., 120, 93-115.
-
(2009)
Theor. Appl. Genet
, vol.120
, pp. 93-115
-
-
Lu, Y.1
Yan, J.2
Guimaraes, C.T.3
-
9
-
-
79959358444
-
Genome-wide distribution and organization of microsatellites in plants: An insight into marker development in Brachypodium
-
Sonah, H., Deshmukh, R.K., Sharma, A., et al. 2011, Genome-wide distribution and organization of microsatellites in plants: an insight into marker development in Brachypodium, PloS One, 6, e21298.
-
(2011)
PloS One
, vol.6
-
-
Sonah, H.1
Deshmukh, R.K.2
Sharma, A.3
-
10
-
-
77956684654
-
Abundance of SSR motifs and development of candidate polymorphic SSR markers (BARCSOYSSR-1. 0) in soybean
-
Song, Q., Jia, G., Zhu, Y., et al. 2010, Abundance of SSR motifs and development of candidate polymorphic SSR markers (BARCSOYSSR-1. 0) in soybean, Crop Sci., 50, 1950-60.
-
(2010)
Crop Sci
, vol.50
, pp. 1950-1960
-
-
Song, Q.1
Jia, G.2
Zhu, Y.3
-
11
-
-
79958083178
-
Identification ofSNPandSSRmarkers ineggplant usingRADtag sequencing
-
Barchi, L., Lanteri, S., Portis, E., et al. 2011, Identification ofSNPandSSRmarkers ineggplant usingRADtag sequencing, BMC Genomics, 12, 304.
-
(2011)
BMC Genomics
, vol.12
, pp. 304
-
-
Barchi, L.1
Lanteri, S.2
Portis, E.3
-
12
-
-
78049332150
-
Genome-wide association studies of 14 agronomic traits in rice landraces
-
Huang, X.,Wei, X., Sang, T., et al. 2010, Genome-wide association studies of 14 agronomic traits in rice landraces, Nat. Genet., 42, 961-7.
-
(2010)
Nat. Genet
, vol.42
, pp. 961-967
-
-
Huang, X.1
Wei, X.2
Sang, T.3
-
13
-
-
0347991996
-
Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites
-
Liu, K., Goodman, M., Muse, S., Smith, J.S., Buckler, E. and Doebley, J. 2003, Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites, Genetics, 165, 2117-28.
-
(2003)
Genetics
, vol.165
, pp. 2117-2128
-
-
Liu, K.1
Goodman, M.2
Muse, S.3
Smith, J.S.4
Buckler, E.5
Doebley, J.6
-
14
-
-
27644482825
-
Genetic diversity among CIMMYT maize inbred lines investigated with SSR markers
-
Xia, X., Reif, J., Melchinger, A., et al. 2005, Genetic diversity among CIMMYT maize inbred lines investigated with SSR markers, Crop Sci., 45, 2573-82.
-
(2005)
Crop Sci
, vol.45
, pp. 2573-2582
-
-
Xia, X.1
Reif, J.2
Melchinger, A.3
-
15
-
-
42449140561
-
Genetic diversity in CIMMYT nontemperate maize germplasm: Landraces, open pollinated varieties, and inbred lines
-
Warburton, M., Reif, J., Frisch, M., et al. 2008, Genetic diversity in CIMMYT nontemperate maize germplasm: landraces, open pollinated varieties, and inbred lines, Crop Sci., 48, 617-24.
-
(2008)
Crop Sci
, vol.48
, pp. 617-624
-
-
Warburton, M.1
Reif, J.2
Frisch, M.3
-
16
-
-
67650711615
-
SOAP2: An improved ultrafast tool for short read alignment
-
Li, R., Yu, C., Li, Y., et al. 2009, SOAP2: an improved ultrafast tool for short read alignment, Bioinformatics, 25, 1966-7.
-
(2009)
Bioinformatics
, vol.25
, pp. 1966-1967
-
-
Li, R.1
Yu, C.2
Li, Y.3
-
17
-
-
84859725424
-
Transcriptome characterization and sequencing-based identification of saltresponsive genes in Millettia pinnata, a semi-mangrove plant
-
Huang, J., Lu, X., Yan, H., et al. 2012, Transcriptome characterization and sequencing-based identification of saltresponsive genes in Millettia pinnata, a semi-mangrove plant, DNA Res., 19, 195-207.
-
(2012)
DNA Res
, vol.19
, pp. 195-207
-
-
Huang, J.1
Lu, X.2
Yan, H.3
-
18
-
-
84863007735
-
Maize HapMap2 identifies extant variation from a genome in flux
-
Chia, J.M., Song, C., Bradbury, P.J., et al. 2012, Maize HapMap2 identifies extant variation from a genome in flux, Nat. Genet., 44, 803-7.
-
(2012)
Nat. Genet
, vol.44
, pp. 803-807
-
-
Chia, J.M.1
Song, C.2
Bradbury, P.J.3
-
19
-
-
0030774039
-
An evaluation of the utility of SSR loci as molecular markers in maize (Zeamays L.): Comparisons with data from RFLPs and pedigree
-
Smith, J., Chin, E., Shu, H., et al. 1997, An evaluation of the utility of SSR loci as molecular markers in maize (Zeamays L.): comparisons with data from RFLPs and pedigree, Theor. Appl. Genet., 95, 163-73.
-
(1997)
Theor. Appl. Genet
, vol.95
, pp. 163-173
-
-
Smith, J.1
Chin, E.2
Shu, H.3
-
20
-
-
0034882994
-
Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential
-
Temnykh, S., DeClerck, G., Lukashova, A., Lipovich, L., Cartinhour, S. and McCouch, S. 2001, Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential, Genome Res., 11, 1441-52.
-
(2001)
Genome Res
, vol.11
, pp. 1441-1452
-
-
Temnykh, S.1
Declerck, G.2
Lukashova, A.3
Lipovich, L.4
Cartinhour, S.5
McCouch, S.6
-
21
-
-
73649094751
-
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs
-
Soderlund, C., Descour, A., Kudrna, D., et al. 2009, Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs, PLoS Genet., 5, e1000740.
-
(2009)
PLoS Genet
, vol.5
-
-
Soderlund, C.1
Descour, A.2
Kudrna, D.3
-
22
-
-
34548405696
-
A genome-wide microsatellite polymorphism database for the indica and japonica rice
-
Zhang, Z., Deng, Y., Tan, J., Hu, S., Yu, J. and Xue, Q. 2007, A genome-wide microsatellite polymorphism database for the indica and japonica rice, DNA Res., 14, 37-45.
-
(2007)
DNA Res
, vol.14
, pp. 37-45
-
-
Zhang, Z.1
Deng, Y.2
Tan, J.3
Hu, S.4
Yu, J.5
Xue, Q.6
-
23
-
-
33745033519
-
Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes
-
Lawson, M.J. and Zhang, L. 2006, Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes, Genome Biol., 7, R14.
-
(2006)
Genome Biol
, vol.7
-
-
Lawson, M.J.1
Zhang, L.2
-
24
-
-
51849085108
-
Development of a set of public SSR markers derived from genomic sequence of a rapid cycling Brassica oleracea L genotype
-
Iniguez-Luy, F.L., Voort, A.V. and Osborn, T.C. 2008, Development of a set of public SSR markers derived from genomic sequence of a rapid cycling Brassica oleracea L. genotype, Theor. Appl. Genet., 117, 977-85.
-
(2008)
Theor. Appl. Genet
, vol.117
, pp. 977-985
-
-
Iniguez-Luy, F.L.1
Voort, A.V.2
Osborn, T.C.3
-
25
-
-
70149117838
-
Development of genome-wide simple sequence repeat markers using whole-genome shotgun sequences of sorghum(Sorghum bicolor (L.) moench)
-
Yonemaru, J., Ando, T., Mizubayashi, T., Kasuga, S., Matsumoto, T. and Yano, M. 2009, Development of genome-wide simple sequence repeat markers using whole-genome shotgun sequences of sorghum(Sorghum bicolor (L.) moench), DNA Res., 16, 187-93.
-
(2009)
DNA Res
, vol.16
, pp. 187-193
-
-
Yonemaru, J.1
Ando, T.2
Mizubayashi, T.3
Kasuga, S.4
Matsumoto, T.5
Yano, M.6
-
26
-
-
0036478903
-
Microsatellites are preferentially associatedwith nonrepetitive DNA in plant genomes
-
Morgante, M., Hanafey, M. and Powell, W. 2002, Microsatellites are preferentially associatedwith nonrepetitive DNA in plant genomes, Nat. Genet., 30, 194-200.
-
(2002)
Nat. Genet
, vol.30
, pp. 194-200
-
-
Morgante, M.1
Hanafey, M.2
Powell, W.3
-
27
-
-
0033951367
-
Selection against frameshift mutations limits microsatellite expansion in coding DNA
-
Metzgar, D., Bytof, J. andWills, C. 2000, Selection against frameshift mutations limits microsatellite expansion in coding DNA, Genome Res., 10, 72-80.
-
(2000)
Genome Res
, vol.10
, pp. 72-80
-
-
Metzgar, D.1
Bytof, J.2
Wills, C.3
-
28
-
-
84879446930
-
Estimation of sequencing error rates in short reads
-
Wang, X.V., Blades,N., Ding, J., Sultana, R. and Parmigiani, G. 2012, Estimation of sequencing error rates in short reads, BMC Bioinformatics, 13, 185.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 185
-
-
Wang, X.V.1
Blades, N.2
Ding, J.3
Sultana, R.4
Parmigiani, G.5
-
29
-
-
84862993359
-
Comparative population genomics of maize domestication and improvement
-
Hufford, M.B., Xu, X., Van Heerwaarden, J., et al. 2012, Comparative population genomics of maize domestication and improvement, Nat. Genet., 44, 808-11.
-
(2012)
Nat. Genet
, vol.44
, pp. 808-811
-
-
Hufford, M.B.1
Xu, X.2
Van Heerwaarden, J.3
-
30
-
-
78049338441
-
Genome-wide patterns of genetic variation among elite maize inbred lines
-
Lai, J., Li, R., Xu, X., et al. 2010, Genome-wide patterns of genetic variation among elite maize inbred lines, Nat. Genet., 42, 1027-30.
-
(2010)
Nat. Genet
, vol.42
, pp. 1027-1030
-
-
Lai, J.1
Li, R.2
Xu, X.3
-
31
-
-
84862981255
-
Genome-wide genetic changes during modern breeding of maize
-
Jiao, Y., Zhao, H.,Ren, L., et al.2012,Genome-wide genetic changes during modern breeding of maize, Nat. Genet., 44, 812-5.
-
(2012)
Nat. Genet
, vol.44
, pp. 812-815
-
-
Jiao, Y.1
Zhao, H.2
Ren, L.3
-
32
-
-
0036010771
-
Development and mapping of SSR markers for maize
-
Sharopova, N., McMullen, M.D., Schultz, L., et al. 2002, Development and mapping of SSR markers for maize, Plant Mol. Biol., 48, 463-81.
-
(2002)
Plant Mol. Biol
, vol.48
, pp. 463-481
-
-
Sharopova, N.1
McMullen, M.D.2
Schultz, L.3
-
33
-
-
33344471412
-
Molecular and functional diversity of maize
-
Buckler, E.S., Gaut, B.S. and McMullen, M.D. 2006, Molecular and functional diversity of maize, Curr. Opin. Plant Biol., 9, 172-6.
-
(2006)
Curr. Opin. Plant Biol
, vol.9
, pp. 172-176
-
-
Buckler, E.S.1
Gaut, B.S.2
McMullen, M.D.3
-
34
-
-
80052824966
-
Comparative SNP and haplotype analysis reveals a higher genetic diversity and rapider LD decay in tropical than temperate germplasm in maize
-
Lu, Y., Shah, T., Hao, Z., et al. 2011, Comparative SNP and haplotype analysis reveals a higher genetic diversity and rapider LD decay in tropical than temperate germplasm in maize, PloS One, 6, e24861.
-
(2011)
PloS One
, Issue.6
-
-
Lu, Y.1
Shah, T.2
Hao, Z.3
-
35
-
-
84856720041
-
Genome-scale identification of resistance gene analogs and the development of their intron length polymorphism markers in maize
-
Liu, H., Lin, Y., Chen, G., Shen, Y., Liu, J. and Zhang, S. 2012, Genome-scale identification of resistance gene analogs and the development of their intron length polymorphism markers in maize, Mol. Breeding, 29, 437-47.
-
(2012)
Mol. Breeding
, vol.29
, pp. 437-447
-
-
Liu, H.1
Lin, Y.2
Chen, G.3
Shen, Y.4
Liu, J.5
Zhang, S.6
-
36
-
-
78751474683
-
Genome nucleotide composition shapes variation in simple sequence repeats
-
Tian, X., Strassmann, J.E. and Queller, D.C. 2011, Genome nucleotide composition shapes variation in simple sequence repeats, Mol. Biol. Evol., 28, 899-909.
-
(2011)
Mol. Biol. Evol
, vol.28
, pp. 899-909
-
-
Tian, X.1
Strassmann, J.E.2
Queller, D.C.3
|