메뉴 건너뛰기




Volumn 33, Issue 41, 2013, Pages 16297-16309

Visualization of synaptic inhibition with an optogenetic sensor developed by cell-free protein engineering automation

Author keywords

[No Author keywords available]

Indexed keywords

4 AMINOBUTYRIC ACID;

EID: 84885095868     PISSN: 02706474     EISSN: 15292401     Source Type: Journal    
DOI: 10.1523/JNEUROSCI.4616-11.2013     Document Type: Article
Times cited : (74)

References (47)
  • 2
    • 77957240693 scopus 로고    scopus 로고
    • Multifactorial determinants of protein expression in prokaryotic open reading frames
    • CrossRef Medline
    • Allert M, Cox JC, Hellinga HW (2010) Multifactorial determinants of protein expression in prokaryotic open reading frames. J Mol Biol 402:905-918. CrossRef Medline
    • (2010) J Mol Biol , vol.402 , pp. 905-918
    • Allert, M.1    Cox, J.C.2    Hellinga, H.W.3
  • 3
    • 34447248749 scopus 로고    scopus 로고
    • Spectroscopic and structural study of proton and halide ion cooperative binding to GFP
    • CrossRef Medline
    • Arosio D, Garau G, Ricci F, Marchetti L, Bizzarri R, Nifosì R, Beltram F (2007) Spectroscopic and structural study of proton and halide ion cooperative binding to GFP. Biophys J 93:232-244. CrossRef Medline
    • (2007) Biophys J , vol.93 , pp. 232-244
    • Arosio, D.1    Garau, G.2    Ricci, F.3    Marchetti, L.4    Bizzarri, R.5    Nifosì, R.6    Beltram, F.7
  • 4
    • 77954750354 scopus 로고    scopus 로고
    • Simultaneous intracellular chloride and pH measurements using a GFPbased sensor
    • CrossRef Medline
    • Arosio D, Ricci F, Marchetti L, Gualdani R, Albertazzi L, Beltram F (2010) Simultaneous intracellular chloride and pH measurements using a GFPbased sensor. Nat Methods 7:516-518. CrossRef Medline
    • (2010) Nat Methods , vol.7 , pp. 516-518
    • Arosio, D.1    Ricci, F.2    Marchetti, L.3    Gualdani, R.4    Albertazzi, L.5    Beltram, F.6
  • 5
    • 0142027791 scopus 로고    scopus 로고
    • Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures
    • CrossRef Medline
    • Barondeau DP, Putnam CD, Kassmann CJ, Tainer JA, Getzoff ED (2003) Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures. Proc Natl Acad Sci U S A 100:12111-12116. CrossRef Medline
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 12111-12116
    • Barondeau, D.P.1    Putnam, C.D.2    Kassmann, C.J.3    Tainer, J.A.4    Getzoff, E.D.5
  • 10
    • 0030832226 scopus 로고    scopus 로고
    • On/off blinking and switching behaviour of single molecules of green fluorescent protein
    • CrossRef Medline
    • Dickson RM, Cubitt AB, Tsien RY, Moerner WE (1997) On/off blinking and switching behaviour of single molecules of green fluorescent protein. Nature 388:355-358. CrossRef Medline
    • (1997) Nature , vol.388 , pp. 355-358
    • Dickson, R.M.1    Cubitt, A.B.2    Tsien, R.Y.3    Moerner, W.E.4
  • 11
    • 0033609034 scopus 로고    scopus 로고
    • Structural and spectral response of green fluorescent protein variants to changes in pH
    • CrossRef Medline
    • Elsliger MA, Wachter RM, Hanson GT, Kallio K, Remington SJ (1999) Structural and spectral response of green fluorescent protein variants to changes in pH. Biochemistry 38:5296-5301. CrossRef Medline
    • (1999) Biochemistry , vol.38 , pp. 5296-5301
    • Elsliger, M.A.1    Wachter, R.M.2    Hanson, G.T.3    Kallio, K.4    Remington, S.J.5
  • 12
    • 13244281317 scopus 로고    scopus 로고
    • Coot: Model-building tools for molecular graphics
    • CrossRef Medline
    • Emsley P, Cowtan K (2004) Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60:2126-2132. CrossRef Medline
    • (2004) Acta Crystallogr D Biol Crystallogr , vol.60 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2
  • 13
    • 33750728028 scopus 로고    scopus 로고
    • Quantitative understanding of the energy transfer between fluorescent proteins connected via flexible peptide linkers
    • CrossRef Medline
    • Evers TH, van Dongen EM, Faesen AC, Meijer EW, Merkx M (2006) Quantitative understanding of the energy transfer between fluorescent proteins connected via flexible peptide linkers. Biochemistry 45:13183-13192. CrossRef Medline
    • (2006) Biochemistry , vol.45 , pp. 13183-13192
    • Evers, T.H.1    van Dongen, E.M.2    Faesen, A.C.3    Meijer, E.W.4    Merkx, M.5
  • 15
    • 0035933577 scopus 로고    scopus 로고
    • Green fluorescent proteinbased halide indicators with improved chloride and iodide affinities
    • CrossRef Medline
    • Galietta LJ, Haggie PM, Verkman AS (2001) Green fluorescent proteinbased halide indicators with improved chloride and iodide affinities. FEBS Lett 499:220-224. CrossRef Medline
    • (2001) FEBS Lett , vol.499 , pp. 220-224
    • Galietta, L.J.1    Haggie, P.M.2    Verkman, A.S.3
  • 18
    • 0035800773 scopus 로고    scopus 로고
    • Reducing the environmental sensitivity of yellow fluorescent protein
    • CrossRef Medline
    • Griesbeck O, Baird GS, Campbell RE, Zacharias DA, Tsien RY (2001) Reducing the environmental sensitivity of yellow fluorescent protein. J Biol Chem 276:29188-29194. CrossRef Medline
    • (2001) J Biol Chem , vol.276 , pp. 29188-29194
    • Griesbeck, O.1    Baird, G.S.2    Campbell, R.E.3    Zacharias, D.A.4    Tsien, R.Y.5
  • 19
    • 0021895138 scopus 로고
    • A new generation of Ca2+ indicators with greatly improved fluorescence properties
    • Medline
    • Grynkiewicz G, Poenie M, Tsien RY (1985) A new generation of Ca2+ indicators with greatly improved fluorescence properties. J Biol Chem 260: 3440-3450. Medline
    • (1985) J Biol Chem , vol.260 , pp. 3440-3450
    • Grynkiewicz, G.1    Poenie, M.2    Tsien, R.Y.3
  • 20
    • 0028580734 scopus 로고
    • Wavelength mutations and posttranslational autoxidation of green fluorescent protein
    • CrossRef Medline
    • Heim R, Prasher DC, Tsien RY (1994) Wavelength mutations and posttranslational autoxidation of green fluorescent protein. Proc Natl Acad Sci U S A 91:12501-12504. CrossRef Medline
    • (1994) Proc Natl Acad Sci U S A , vol.91 , pp. 12501-12504
    • Heim, R.1    Prasher, D.C.2    Tsien, R.Y.3
  • 21
    • 41949134810 scopus 로고    scopus 로고
    • Optical measurement of synaptic glutamate spillover and reuptake by linker optimized glutamate-sensitive fluorescent reporters
    • CrossRef Medline
    • Hires SA, Zhu Y, Tsien RY (2008) Optical measurement of synaptic glutamate spillover and reuptake by linker optimized glutamate-sensitive fluorescent reporters. Proc Natl Acad Sci U S A 105:4411-4416. CrossRef Medline
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 4411-4416
    • Hires, S.A.1    Zhu, Y.2    Tsien, R.Y.3
  • 22
    • 77950440622 scopus 로고    scopus 로고
    • Picomole-scale characterization of protein stability and function by quantitative cysteine reactivity
    • CrossRef Medline
    • Isom DG, Vardy E, Oas TG, Hellinga HW (2010) Picomole-scale characterization of protein stability and function by quantitative cysteine reactivity. Proc Natl Acad Sci U S A 107:4908-4913. CrossRef Medline
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 4908-4913
    • Isom, D.G.1    Vardy, E.2    Oas, T.G.3    Hellinga, H.W.4
  • 23
    • 0034052719 scopus 로고    scopus 로고
    • Mechanism and cellular applications of a green fluorescent protein-based halide sensor
    • CrossRef Medline
    • Jayaraman S, Haggie P, Wachter RM, Remington SJ, Verkman AS (2000) Mechanism and cellular applications of a green fluorescent protein-based halide sensor. J Biol Chem 275:6047-6050. CrossRef Medline
    • (2000) J Biol Chem , vol.275 , pp. 6047-6050
    • Jayaraman, S.1    Haggie, P.2    Wachter, R.M.3    Remington, S.J.4    Verkman, A.S.5
  • 24
    • 0033724998 scopus 로고    scopus 로고
    • A genetically encoded ratiometric indicator for chloride: Capturing chloride transients in cultured hippocampal neurons
    • CrossRef Medline
    • Kuner T, Augustine GJ (2000) A genetically encoded ratiometric indicator for chloride: capturing chloride transients in cultured hippocampal neurons. Neuron 27:447-459. CrossRef Medline
    • (2000) Neuron , vol.27 , pp. 447-459
    • Kuner, T.1    Augustine, G.J.2
  • 25
    • 78650485354 scopus 로고    scopus 로고
    • Thermodynamic analysis of ligandinduced changes in protein thermal unfolding applied to highthroughput determination of ligand-affinities with extrinsic fluorescent dyes
    • CrossRef Medline
    • Layton CJ, Hellinga HW (2010) Thermodynamic analysis of ligandinduced changes in protein thermal unfolding applied to highthroughput determination of ligand-affinities with extrinsic fluorescent dyes. Biochemistry 49:10831-10841. CrossRef Medline
    • (2010) Biochemistry , vol.49 , pp. 10831-10841
    • Layton, C.J.1    Hellinga, H.W.2
  • 27
    • 41049099330 scopus 로고    scopus 로고
    • Genetically encoded chloride indicator with improved sensitivity
    • CrossRef Medline
    • Markova O, Mukhtarov M, Real E, Jacob Y, Bregestovski P (2008) Genetically encoded chloride indicator with improved sensitivity. J Neurosci Methods 170:67-76. CrossRef Medline
    • (2008) J Neurosci Methods , vol.170 , pp. 67-76
    • Markova, O.1    Mukhtarov, M.2    Real, E.3    Jacob, Y.4    Bregestovski, P.5
  • 28
    • 0030896261 scopus 로고    scopus 로고
    • The rational design of allosteric interactions in a monomeric protein and its application to the construction of biosensors
    • CrossRef Medline
    • Marvin JS, Corcoran EE, Hattangadi NA, Zhang JV, Gere SA, Hellinga HW (1997) The rational design of allosteric interactions in a monomeric protein and its application to the construction of biosensors. Proc Natl Acad Sci U S A 94:4366-4371. CrossRef Medline
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 4366-4371
    • Marvin, J.S.1    Corcoran, E.E.2    Hattangadi, N.A.3    Zhang, J.V.4    Gere, S.A.5    Hellinga, H.W.6
  • 30
    • 26944499780 scopus 로고    scopus 로고
    • Innovations in the imaging of brain functions using fluorescent proteins
    • CrossRef Medline
    • Miyawaki A (2005) Innovations in the imaging of brain functions using fluorescent proteins. Neuron 48:189-199. CrossRef Medline
    • (2005) Neuron , vol.48 , pp. 189-199
    • Miyawaki, A.1
  • 31
    • 0030610646 scopus 로고    scopus 로고
    • Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin
    • CrossRef Medline
    • Miyawaki A, Llopis J, Heim R, McCaffery JM, Adams JA, Ikura M, Tsien RY (1997) Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin. Nature 388:882-887. CrossRef Medline
    • (1997) Nature , vol.388 , pp. 882-887
    • Miyawaki, A.1    Llopis, J.2    Heim, R.3    McCaffery, J.M.4    Adams, J.A.5    Ikura, M.6    Tsien, R.Y.7
  • 32
    • 0030924992 scopus 로고    scopus 로고
    • Refinement of macromolecular structures by the maximum-likelihood method
    • CrossRef Medline
    • Murshudov GN, Vagin AA, Dodson EJ (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D Biol Crystallogr 53:240-255. CrossRef Medline
    • (1997) Acta Crystallogr D Biol Crystallogr , vol.53 , pp. 240-255
    • Murshudov, G.N.1    Vagin, A.A.2    Dodson, E.J.3
  • 33
    • 77950627617 scopus 로고    scopus 로고
    • Imaging approach for monitoring cellular metabolites and ions using genetically encoded biosensors
    • CrossRef Medline
    • Okumoto S (2010) Imaging approach for monitoring cellular metabolites and ions using genetically encoded biosensors. Curr Opin Biotechnol 21:45-54. CrossRef Medline
    • (2010) Curr Opin Biotechnol , vol.21 , pp. 45-54
    • Okumoto, S.1
  • 34
    • 20844449080 scopus 로고    scopus 로고
    • Detection of glutamate release from neurons by genetically encoded surface-displayed FRET nanosensors
    • CrossRef Medline
    • Okumoto S, Looger LL, Micheva KD, Reimer RJ, Smith SJ, Frommer WB (2005) Detection of glutamate release from neurons by genetically encoded surface-displayed FRET nanosensors. Proc Natl Acad Sci U S A 102:8740-8745. CrossRef Medline
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 8740-8745
    • Okumoto, S.1    Looger, L.L.2    Micheva, K.D.3    Reimer, R.J.4    Smith, S.J.5    Frommer, W.B.6
  • 35
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • CrossRef
    • Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276:307-326. CrossRef
    • (1997) Methods Enzymol , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 36
  • 38
    • 0028937109 scopus 로고
    • Calcium transients in cerebellar granule cell presynaptic terminals
    • CrossRef Medline
    • Regehr WG, Atluri PP (1995) Calcium transients in cerebellar granule cell presynaptic terminals. Biophys J 68:2156-2170. CrossRef Medline
    • (1995) Biophys J , vol.68 , pp. 2156-2170
    • Regehr, W.G.1    Atluri, P.P.2
  • 39
    • 1842424983 scopus 로고    scopus 로고
    • An improved cyan fluorescent protein variants useful for FRET
    • CrossRef Medline
    • Rizzo MA, Springer GH, Granada B, Piston DW (2004) An improved cyan fluorescent protein variants useful for FRET. Nat Biotechnol 22:445-449. CrossRef Medline
    • (2004) Nat Biotechnol , vol.22 , pp. 445-449
    • Rizzo, M.A.1    Springer, G.H.2    Granada, B.3    Piston, D.W.4
  • 40
    • 33646893036 scopus 로고    scopus 로고
    • Concatenation of cyan and yellow fluorescent proteins for efficient resonance energy transfer
    • CrossRef Medline
    • Shimozono S, Hosoi H, Mizuno H, Fukano T, Tahara T, Miyawaki A (2006) Concatenation of cyan and yellow fluorescent proteins for efficient resonance energy transfer. Biochemistry 45:6267-6271. CrossRef Medline
    • (2006) Biochemistry , vol.45 , pp. 6267-6271
    • Shimozono, S.1    Hosoi, H.2    Mizuno, H.3    Fukano, T.4    Tahara, T.5    Miyawaki, A.6
  • 41
    • 0030834492 scopus 로고    scopus 로고
    • A genetically encoded optical probe of membrane voltage
    • CrossRef Medline
    • Siegel MS, Isacoff EY (1997) A genetically encoded optical probe of membrane voltage. Neuron 19:735-741. CrossRef Medline
    • (1997) Neuron , vol.19 , pp. 735-741
    • Siegel, M.S.1    Isacoff, E.Y.2
  • 42
    • 22544460277 scopus 로고    scopus 로고
    • Base catalysis of chromophore formation in Arg96 and Glu222 variants of green fluorescent protein
    • CrossRef Medline
    • Sniegowski JA, Lappe JW, Patel HN, Huffman HA, Wachter RM (2005) Base catalysis of chromophore formation in Arg96 and Glu222 variants of green fluorescent protein. J Biol Chem 280:26248-26255. CrossRef Medline
    • (2005) J Biol Chem , vol.280 , pp. 26248-26255
    • Sniegowski, J.A.1    Lappe, J.W.2    Patel, H.N.3    Huffman, H.A.4    Wachter, R.M.5
  • 43
    • 14844294424 scopus 로고    scopus 로고
    • Protein production by auto-induction in highdensity shaking cultures
    • CrossRef Medline
    • Studier FW (2005) Protein production by auto-induction in highdensity shaking cultures. Protein Expr Purif 41:207-234. CrossRef Medline
    • (2005) Protein Expr Purif , vol.41 , pp. 207-234
    • Studier, F.W.1
  • 44
    • 0033539088 scopus 로고    scopus 로고
    • Sensitivity of the yellow fluorescent protein to halides and nitrate
    • CrossRef Medline
    • Wachter RM, Remington SJ (1999) Sensitivity of the yellow fluorescent protein to halides and nitrate. Curr Biol 9:R628-R629. CrossRef Medline
    • (1999) Curr Biol , vol.9
    • Wachter, R.M.1    Remington, S.J.2
  • 45
    • 0034604399 scopus 로고    scopus 로고
    • Crystallographic and energetic analysis of binding of selected anions to the yellow variants of green fluorescent protein
    • CrossRef Medline
    • Wachter RM, Yarbrough D, Kallio K, Remington SJ (2000) Crystallographic and energetic analysis of binding of selected anions to the yellow variants of green fluorescent protein. J Mol Biol 301:157-171. CrossRef Medline
    • (2000) J Mol Biol , vol.301 , pp. 157-171
    • Wachter, R.M.1    Yarbrough, D.2    Kallio, K.3    Remington, S.J.4
  • 46
    • 0035910511 scopus 로고    scopus 로고
    • Stable SNARE complex prior to evoked synaptic vesicle fusion revealed by fluorescence resonance energy transfer
    • Medline
    • Xia Z, Zhou Q, Lin J, Liu Y (2001) Stable SNARE complex prior to evoked synaptic vesicle fusion revealed by fluorescence resonance energy transfer. J Biol Chem 276:1766-1771. Medline
    • (2001) J Biol Chem , vol.276 , pp. 1766-1771
    • Xia, Z.1    Zhou, Q.2    Lin, J.3    Liu, Y.4
  • 47
    • 77749323191 scopus 로고    scopus 로고
    • Optogenetic interrogation of neural circuits: Technology for probing mammalian brain structures
    • CrossRef Medline
    • Zhang F, Gradinaru V, Adamantidis AR, Durand R, Airan RD, de Lecea L, Deisseroth K (2010) Optogenetic interrogation of neural circuits: technology for probing mammalian brain structures. Nat Protoc 5:439-456. CrossRef Medline
    • (2010) Nat Protoc , vol.5 , pp. 439-456
    • Zhang, F.1    Gradinaru, V.2    Adamantidis, A.R.3    Durand, R.4    Airan, R.D.5    de Lecea, L.6    Deisseroth, K.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.