-
1
-
-
77956190770
-
Structural characterization of proteins and complexes using small-angle X-ray solution scattering
-
Mertens, H. D. and Svergun, D. I. (2010) Structural characterization of proteins and complexes using small-angle X-ray solution scattering J. Struct. Biol. 172, 128-141
-
(2010)
J. Struct. Biol.
, vol.172
, pp. 128-141
-
-
Mertens, H.D.1
Svergun, D.I.2
-
2
-
-
77950223101
-
Small-angle scattering for structural biology - Expanding the frontier while avoiding the pitfalls
-
Jacques, D. A. and Trewhella, J. (2010) Small-angle scattering for structural biology-Expanding the frontier while avoiding the pitfalls Protein Sci. 19, 642-657
-
(2010)
Protein Sci.
, vol.19
, pp. 642-657
-
-
Jacques, D.A.1
Trewhella, J.2
-
3
-
-
84877778935
-
Super-resolution in solution X-ray scattering and its applications to structural systems biology
-
Rambo, R. P. and Tainer, J. A. (2013) Super-resolution in solution X-ray scattering and its applications to structural systems biology Annu. Rev. Biophys. 42, 415-441
-
(2013)
Annu. Rev. Biophys.
, vol.42
, pp. 415-441
-
-
Rambo, R.P.1
Tainer, J.A.2
-
4
-
-
84859782518
-
New developments in the ATSAS program package for small-angle scattering data analysis
-
Petoukhov, M. V., Franke, D., Shkumatov, A. V., Tria, G., Kikhney, A. G., Gajda, M., Gorba, C., Mertens, H. D. T., Konarev, P. V., and Svergun, D. I. (2012) New developments in the ATSAS program package for small-angle scattering data analysis J. Appl. Crystallogr. 45, 342-350
-
(2012)
J. Appl. Crystallogr.
, vol.45
, pp. 342-350
-
-
Petoukhov, M.V.1
Franke, D.2
Shkumatov, A.V.3
Tria, G.4
Kikhney, A.G.5
Gajda, M.6
Gorba, C.7
Mertens, H.D.T.8
Konarev, P.V.9
Svergun, D.I.10
-
6
-
-
0001252801
-
New developments in direct shape determination from small-angle scattering 2. Uniqueness
-
Svergun, D. I., Volkov, V. V., Kozin, M. B., and Stuhrmann, H. B. (1996) New developments in direct shape determination from small-angle scattering 2. Uniqueness Acta Crystallogr. A52, 419-426
-
(1996)
Acta Crystallogr.
, vol.52
, pp. 419-426
-
-
Svergun, D.I.1
Volkov, V.V.2
Kozin, M.B.3
Stuhrmann, H.B.4
-
7
-
-
0031807272
-
Low-resolution structures of proteins in solution retrieved from X-ray scattering with a genetic algorithm
-
Chacon, P., Moran, F., Diaz, J. F., Pantos, E., and Andreu, J. M. (1998) Low-resolution structures of proteins in solution retrieved from X-ray scattering with a genetic algorithm Biophys. J. 74, 2760-2775
-
(1998)
Biophys. J.
, vol.74
, pp. 2760-2775
-
-
Chacon, P.1
Moran, F.2
Diaz, J.F.3
Pantos, E.4
Andreu, J.M.5
-
8
-
-
0033001996
-
Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing
-
Svergun, D. I. (1999) Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing Biophys. J. 76, 2879-2886
-
(1999)
Biophys. J.
, vol.76
, pp. 2879-2886
-
-
Svergun, D.I.1
-
9
-
-
62649139615
-
DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering
-
Franke, D. and Svergun, D. I. (2009) DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering J. Appl. Crystallogr. 42, 342-346
-
(2009)
J. Appl. Crystallogr.
, vol.42
, pp. 342-346
-
-
Franke, D.1
Svergun, D.I.2
-
10
-
-
0035010533
-
Determination of domain structure of proteins from X-ray solution scattering
-
Svergun, D. I., Petoukhov, M. V., and Koch, M. H. J. (2001) Determination of domain structure of proteins from X-ray solution scattering Biophys. J. 80, 2946-2953
-
(2001)
Biophys. J.
, vol.80
, pp. 2946-2953
-
-
Svergun, D.I.1
Petoukhov, M.V.2
Koch, M.H.J.3
-
11
-
-
23244455562
-
Global rigid body modeling of macromolecular complexes against small-angle scattering data
-
Petoukhov, M. V. and Svergun, D. I. (2005) Global rigid body modeling of macromolecular complexes against small-angle scattering data Biophys. J. 89, 1237-1250
-
(2005)
Biophys. J.
, vol.89
, pp. 1237-1250
-
-
Petoukhov, M.V.1
Svergun, D.I.2
-
12
-
-
82055161782
-
DADIMODO: A program for refining the structure of multidomain proteins and complexes against small-angle scattering data and NMR-derived restraints
-
Evrard, G., Mareuil, F., Bontems, F., Sizun, C., and Perez, J. (2011) DADIMODO: a program for refining the structure of multidomain proteins and complexes against small-angle scattering data and NMR-derived restraints J. Appl. Crystallogr. 44, 1264-1271
-
(2011)
J. Appl. Crystallogr.
, vol.44
, pp. 1264-1271
-
-
Evrard, G.1
Mareuil, F.2
Bontems, F.3
Sizun, C.4
Perez, J.5
-
13
-
-
50349088228
-
A structure refinement protocol combining NMR residual dipolar couplings and small angle scattering restraints
-
Gabel, F., Simon, B., Nilges, M., Petoukhov, M., Svergun, D., and Sattler, M. (2008) A structure refinement protocol combining NMR residual dipolar couplings and small angle scattering restraints J. Biomol. NMR 41, 199-208
-
(2008)
J. Biomol. NMR
, vol.41
, pp. 199-208
-
-
Gabel, F.1
Simon, B.2
Nilges, M.3
Petoukhov, M.4
Svergun, D.5
Sattler, M.6
-
14
-
-
70349316826
-
Combined sampler robot and high-performance liquid chromatography: A fully automated system for biological small-angle X-ray scattering experiments at the Synchrotron SOLEIL SWING beamline
-
David, G. and Perez, J. (2009) Combined sampler robot and high-performance liquid chromatography: a fully automated system for biological small-angle X-ray scattering experiments at the Synchrotron SOLEIL SWING beamline J. Appl. Crystallogr. 42, 892-900
-
(2009)
J. Appl. Crystallogr.
, vol.42
, pp. 892-900
-
-
David, G.1
Perez, J.2
-
15
-
-
0345169163
-
Small-angle scattering: A view on the properties, structures and structural changes of biological macromolecules in solution
-
Koch, M. H., Vachette, P., and Svergun, D. I. (2003) Small-angle scattering: a view on the properties, structures and structural changes of biological macromolecules in solution Q. Rev. Biophys. 36, 147-227
-
(2003)
Q. Rev. Biophys.
, vol.36
, pp. 147-227
-
-
Koch, M.H.1
Vachette, P.2
Svergun, D.I.3
-
16
-
-
33645214738
-
ATSAS 2.1, a program package for small-angle scattering data analysis
-
Konarev, P. V., Petoukhov, M. V., Volkov, V. V., and Svergun, D. I. (2006) ATSAS 2.1, a program package for small-angle scattering data analysis J. Appl. Crystallogr. 39, 277-286
-
(2006)
J. Appl. Crystallogr.
, vol.39
, pp. 277-286
-
-
Konarev, P.V.1
Petoukhov, M.V.2
Volkov, V.V.3
Svergun, D.I.4
-
17
-
-
34247891557
-
Structural characterization of flexible proteins using small-angle X-ray scattering
-
Bernado, P., Mylonas, E., Petoukhov, M. V., Blackledge, M., and Svergun, D. I. (2007) Structural characterization of flexible proteins using small-angle X-ray scattering J. Am. Chem. Soc. 129, 5656-5664
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 5656-5664
-
-
Bernado, P.1
Mylonas, E.2
Petoukhov, M.V.3
Blackledge, M.4
Svergun, D.I.5
-
18
-
-
67650992092
-
Structure and flexibility within proteins as identified through small angle X-ray scattering
-
Pelikan, M., Hura, G. L., and Hammel, M. (2009) Structure and flexibility within proteins as identified through small angle X-ray scattering Gen. Physiol. Biophys. 28, 174-189
-
(2009)
Gen. Physiol. Biophys.
, vol.28
, pp. 174-189
-
-
Pelikan, M.1
Hura, G.L.2
Hammel, M.3
-
19
-
-
79958071654
-
X-ray solution scattering studies of the structural diversity intrinsic to protein ensembles
-
Makowski, L., Gore, D., Mandava, S., Minh, D., Park, S., Rodi, D. J., and Fischetti, R. F. (2011) X-ray solution scattering studies of the structural diversity intrinsic to protein ensembles Biopolymers 95, 531-542
-
(2011)
Biopolymers
, vol.95
, pp. 531-542
-
-
Makowski, L.1
Gore, D.2
Mandava, S.3
Minh, D.4
Park, S.5
Rodi, D.J.6
Fischetti, R.F.7
-
20
-
-
77957655386
-
Multidomain assembled states of Hck tyrosine kinase in solution
-
Yang, S., Blachowicz, L., Makowski, L., and Roux, B. (2010) Multidomain assembled states of Hck tyrosine kinase in solution Proc. Natl. Acad. Sci. U.S.A. 107, 15757-15762
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 15757-15762
-
-
Yang, S.1
Blachowicz, L.2
Makowski, L.3
Roux, B.4
-
21
-
-
34249028643
-
A helical structural nucleus is the primary elongating unit of insulin amyloid fibrils
-
Vestergaard, B., Groenning, M., Roessle, M., Kastrup, J. S., van de Weert, M., Flink, J. M., Frokjaer, S., Gajhede, M., and Svergun, D. I. (2007) A helical structural nucleus is the primary elongating unit of insulin amyloid fibrils PLoS Biol. 5, e134-1-e134-9
-
(2007)
PLoS Biol.
, vol.5
-
-
Vestergaard, B.1
Groenning, M.2
Roessle, M.3
Kastrup, J.S.4
Van De Weert, M.5
Flink, J.M.6
Frokjaer, S.7
Gajhede, M.8
Svergun, D.I.9
-
22
-
-
67849117365
-
Low-resolution structures of transient protein-protein complexes using small-angle X-ray scattering
-
Blobel, J., Bernado, P., Svergun, D. I., Tauler, R., and Pons, M. (2009) Low-resolution structures of transient protein-protein complexes using small-angle X-ray scattering J. Am. Chem. Soc. 131, 4378-4386
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 4378-4386
-
-
Blobel, J.1
Bernado, P.2
Svergun, D.I.3
Tauler, R.4
Pons, M.5
-
23
-
-
0026910457
-
Determination of the regularization parameter in indirect-transform methods using perceptual criteria
-
Svergun, D. I. (1992) Determination of the regularization parameter in indirect-transform methods using perceptual criteria J. Appl. Crystallogr. 25, 495-503
-
(1992)
J. Appl. Crystallogr.
, vol.25
, pp. 495-503
-
-
Svergun, D.I.1
-
24
-
-
0029185933
-
CRYSOL - A program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates
-
Svergun, D. I., Barberato, C., and Koch, M. H. J. (1995) CRYSOL-a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates J. Appl. Crystallogr. 28, 768-773
-
(1995)
J. Appl. Crystallogr.
, vol.28
, pp. 768-773
-
-
Svergun, D.I.1
Barberato, C.2
Koch, M.H.J.3
-
25
-
-
0037701585
-
Uniqueness of ab initio shape determination in small angle scattering
-
Volkov, V. V. and Svergun, D. I. (2003) Uniqueness of ab initio shape determination in small angle scattering J. Appl. Crystallogr. 36, 860-864
-
(2003)
J. Appl. Crystallogr.
, vol.36
, pp. 860-864
-
-
Volkov, V.V.1
Svergun, D.I.2
-
26
-
-
0035124442
-
Automated matching of high- and low-resolution structural models
-
Kozin, M. B. and Svergun, D. I. (2001) Automated matching of high- and low-resolution structural models J. Appl. Crystallogr. 34, 33-41
-
(2001)
J. Appl. Crystallogr.
, vol.34
, pp. 33-41
-
-
Kozin, M.B.1
Svergun, D.I.2
-
27
-
-
34248347847
-
Upgrade of the small-angle X-ray scattering beamline X33 at the European Molecular Biology Laboratory, Hamburg
-
Roessle, M. W., Klaering, R., Ristau, U., Robrahn, B., Jahn, D., Gehrmann, T., Konarev, P., Round, A., Fiedler, S., Hermes, C., and Svergun, D. (2007) Upgrade of the small-angle X-ray scattering beamline X33 at the European Molecular Biology Laboratory, Hamburg J. Appl. Crystallogr. 40, s190-s194
-
(2007)
J. Appl. Crystallogr.
, vol.40
-
-
Roessle, M.W.1
Klaering, R.2
Ristau, U.3
Robrahn, B.4
Jahn, D.5
Gehrmann, T.6
Konarev, P.7
Round, A.8
Fiedler, S.9
Hermes, C.10
Svergun, D.11
-
28
-
-
51949084084
-
Automated sample-changing robot for solution scattering experiments at the EMBL Hamburg SAXS station X33
-
Round, A. R., Franke, D., Moritz, S., Huchler, R., Fritsche, M., Malthan, D., Klaering, R., Svergun, D. I., and Roessle, M. (2008) Automated sample-changing robot for solution scattering experiments at the EMBL Hamburg SAXS station X33 J. Appl. Crystallogr. 41, 913-917
-
(2008)
J. Appl. Crystallogr.
, vol.41
, pp. 913-917
-
-
Round, A.R.1
Franke, D.2
Moritz, S.3
Huchler, R.4
Fritsche, M.5
Malthan, D.6
Klaering, R.7
Svergun, D.I.8
Roessle, M.9
-
29
-
-
0141484613
-
PRIMUS - A Windows-PC based system for small-angle scattering data analysis
-
Konarev, P. V., Volkov, V. V., Sokolova, A. V., Koch, M. H. J., and Svergun, D. I. (2003) PRIMUS-a Windows-PC based system for small-angle scattering data analysis J. Appl. Crystallogr. 36, 1277-1282
-
(2003)
J. Appl. Crystallogr.
, vol.36
, pp. 1277-1282
-
-
Konarev, P.V.1
Volkov, V.V.2
Sokolova, A.V.3
Koch, M.H.J.4
Svergun, D.I.5
-
30
-
-
0015994218
-
Real-space refinement of the structure of hen egg-white lysozyme
-
Diamond, R. (1974) Real-space refinement of the structure of hen egg-white lysozyme J. Mol. Biol. 82, 371-391
-
(1974)
J. Mol. Biol.
, vol.82
, pp. 371-391
-
-
Diamond, R.1
-
31
-
-
33646195686
-
Detection of protein assemblies in crystals
-
in (Berthold, M. R. Ed.), pp, Springer-Verlag, Berlin. - 174
-
Krissinel, E. and Henrick, K. (2005) Detection of protein assemblies in crystals, in CompLife 2005 (Berthold, M. R., Ed.), pp 163-174, Springer-Verlag, Berlin.
-
(2005)
CompLife 2005
, pp. 163
-
-
Krissinel, E.1
Henrick, K.2
-
32
-
-
80455176998
-
Structural and functional insights into a dodecameric molecular machine - The RuvBL1/RuvBL2 complex
-
Gorynia, S., Bandeiras, T. M., Pinho, F. G., McVey, C. E., Vonrhein, C., Round, A., Svergun, D. I., Donner, P., Matias, P. M., and Carrondo, M. A. (2011) Structural and functional insights into a dodecameric molecular machine-the RuvBL1/RuvBL2 complex J. Struct. Biol. 176, 279-291
-
(2011)
J. Struct. Biol.
, vol.176
, pp. 279-291
-
-
Gorynia, S.1
Bandeiras, T.M.2
Pinho, F.G.3
McVey, C.E.4
Vonrhein, C.5
Round, A.6
Svergun, D.I.7
Donner, P.8
Matias, P.M.9
Carrondo, M.A.10
-
33
-
-
60349086107
-
Kinetic and mechanistic characterization of Mycobacterium tuberculosis glutamyl-tRNA synthetase and determination of its oligomeric structure in solution
-
Paravisi, S., Fumagalli, G., Riva, M., Morandi, P., Morosi, R., Konarev, P. V., Petoukhov, M. V., Bernier, S., Chenevert, R., Svergun, D. I., Curti, B., and Vanoni, M. A. (2009) Kinetic and mechanistic characterization of Mycobacterium tuberculosis glutamyl-tRNA synthetase and determination of its oligomeric structure in solution FEBS J. 276, 1398-1417
-
(2009)
FEBS J.
, vol.276
, pp. 1398-1417
-
-
Paravisi, S.1
Fumagalli, G.2
Riva, M.3
Morandi, P.4
Morosi, R.5
Konarev, P.V.6
Petoukhov, M.V.7
Bernier, S.8
Chenevert, R.9
Svergun, D.I.10
Curti, B.11
Vanoni, M.A.12
-
34
-
-
84861792561
-
Structural and immunologic characterization of bovine, horse, and rabbit serum albumins
-
Majorek, K. A., Porebski, P. J., Dayal, A., Zimmerman, M. D., Jablonska, K., Stewart, A. J., Chruszcz, M., and Minor, W. (2012) Structural and immunologic characterization of bovine, horse, and rabbit serum albumins Mol. Immunol. 52, 174-182
-
(2012)
Mol. Immunol.
, vol.52
, pp. 174-182
-
-
Majorek, K.A.1
Porebski, P.J.2
Dayal, A.3
Zimmerman, M.D.4
Jablonska, K.5
Stewart, A.J.6
Chruszcz, M.7
Minor, W.8
-
35
-
-
48649089156
-
Dissecting NGF interactions with TrkA and p75 receptors by structural and functional studies of an anti-NGF neutralizing antibody
-
Covaceuszach, S., Cassetta, A., Konarev, P. V., Gonfloni, S., Rudolph, R., Svergun, D. I., Lamba, D., and Cattaneo, A. (2008) Dissecting NGF interactions with TrkA and p75 receptors by structural and functional studies of an anti-NGF neutralizing antibody J. Mol. Biol. 381, 881-896
-
(2008)
J. Mol. Biol.
, vol.381
, pp. 881-896
-
-
Covaceuszach, S.1
Cassetta, A.2
Konarev, P.V.3
Gonfloni, S.4
Rudolph, R.5
Svergun, D.I.6
Lamba, D.7
Cattaneo, A.8
-
37
-
-
53849088227
-
Transcriptional control of energy homeostasis by the estrogen-related receptors
-
Giguere, V. (2008) Transcriptional control of energy homeostasis by the estrogen-related receptors Endocr. Rev. 29, 677-696
-
(2008)
Endocr. Rev.
, vol.29
, pp. 677-696
-
-
Giguere, V.1
-
38
-
-
0036187372
-
Structural and functional evidence for ligand-independent transcriptional activation by the estrogen-related receptor 3
-
Greschik, H., Wurtz, J. M., Sanglier, S., Bourguet, W., van Dorsselaer, A., Moras, D., and Renaud, J. P. (2002) Structural and functional evidence for ligand-independent transcriptional activation by the estrogen-related receptor 3 Mol. Cell 9, 303-313
-
(2002)
Mol. Cell
, vol.9
, pp. 303-313
-
-
Greschik, H.1
Wurtz, J.M.2
Sanglier, S.3
Bourguet, W.4
Van Dorsselaer, A.5
Moras, D.6
Renaud, J.P.7
-
39
-
-
10344247702
-
Evidence for ligand-independent transcriptional activation of the human estrogen-related receptor alpha (ERRalpha): Crystal structure of ERRalpha ligand binding domain in complex with peroxisome proliferator-activated receptor coactivator-1alpha
-
Kallen, J., Schlaeppi, J. M., Bitsch, F., Filipuzzi, I., Schilb, A., Riou, V., Graham, A., Strauss, A., Geiser, M., and Fournier, B. (2004) Evidence for ligand-independent transcriptional activation of the human estrogen-related receptor alpha (ERRalpha): crystal structure of ERRalpha ligand binding domain in complex with peroxisome proliferator-activated receptor coactivator-1alpha J. Biol. Chem. 279, 49330-49337
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 49330-49337
-
-
Kallen, J.1
Schlaeppi, J.M.2
Bitsch, F.3
Filipuzzi, I.4
Schilb, A.5
Riou, V.6
Graham, A.7
Strauss, A.8
Geiser, M.9
Fournier, B.10
-
40
-
-
50649109865
-
Communication between the ERRalpha homodimer interface and the PGC-1alpha binding surface via the helix 8-9 loop
-
Greschik, H., Althage, M., Flaig, R., Sato, Y., Chavant, V., Peluso-Iltis, C., Choulier, L., Cronet, P., Rochel, N., Schule, R., Stromstedt, P. E., and Moras, D. (2008) Communication between the ERRalpha homodimer interface and the PGC-1alpha binding surface via the helix 8-9 loop J. Biol. Chem. 283, 20220-20230
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 20220-20230
-
-
Greschik, H.1
Althage, M.2
Flaig, R.3
Sato, Y.4
Chavant, V.5
Peluso-Iltis, C.6
Choulier, L.7
Cronet, P.8
Rochel, N.9
Schule, R.10
Stromstedt, P.E.11
Moras, D.12
-
41
-
-
34548146568
-
Crystal structure of human estrogen-related receptor alpha in complex with a synthetic inverse agonist reveals its novel molecular mechanism
-
Kallen, J., Lattmann, R., Beerli, R., Blechschmidt, A., Blommers, M. J., Geiser, M., Ottl, J., Schlaeppi, J. M., Strauss, A., and Fournier, B. (2007) Crystal structure of human estrogen-related receptor alpha in complex with a synthetic inverse agonist reveals its novel molecular mechanism J. Biol. Chem. 282, 23231-23239
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 23231-23239
-
-
Kallen, J.1
Lattmann, R.2
Beerli, R.3
Blechschmidt, A.4
Blommers, M.J.5
Geiser, M.6
Ottl, J.7
Schlaeppi, J.M.8
Strauss, A.9
Fournier, B.10
|