-
1
-
-
0037417886
-
Identification of nucleocytoplasmic cycling as a remote sensor in cellular signaling by databased modeling
-
Swameye I, Müller T, Timmer J, Sandra O, Klingmüller U, (2003) Identification of nucleocytoplasmic cycling as a remote sensor in cellular signaling by databased modeling. Proceedings of the National Academy of Sciences 100: 1028-1033.
-
(2003)
Proceedings of the National Academy of Sciences
, vol.100
, pp. 1028-1033
-
-
Swameye, I.1
Müller, T.2
Timmer, J.3
Sandra, O.4
Klingmüller, U.5
-
2
-
-
77953582302
-
Covering a broad dynamic range: information processing at the erythropoietin receptor
-
Becker V, Schilling M, Bachmann J, Baumann U, Raue A, et al. (2010) Covering a broad dynamic range: information processing at the erythropoietin receptor. Science 328: 1404-1408.
-
(2010)
Science
, vol.328
, pp. 1404-1408
-
-
Becker, V.1
Schilling, M.2
Bachmann, J.3
Baumann, U.4
Raue, A.5
-
5
-
-
66249136447
-
Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis
-
Spencer S, Gaudet S, Albeck J, Burke J, Sorger P, (2009) Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis. Nature 459: 428-432.
-
(2009)
Nature
, vol.459
, pp. 428-432
-
-
Spencer, S.1
Gaudet, S.2
Albeck, J.3
Burke, J.4
Sorger, P.5
-
6
-
-
84861443923
-
Moment-based inference predicts bimodality in transient gene expression
-
Zechner C, Ruess J, Krenn P, Pelet S, Peter M, et al. (2012) Moment-based inference predicts bimodality in transient gene expression. Proceedings of the National Academy of Sciences 109: 8340-8345.
-
(2012)
Proceedings of the National Academy of Sciences
, vol.109
, pp. 8340-8345
-
-
Zechner, C.1
Ruess, J.2
Krenn, P.3
Pelet, S.4
Peter, M.5
-
7
-
-
79960594395
-
Division of labor by dual feedback regulators controls JAK2/STAT5 signaling over broad ligand range
-
Bachmann J, Raue A, Schilling M, Böhm M, Kreutz C, et al. (2011) Division of labor by dual feedback regulators controls JAK2/STAT5 signaling over broad ligand range. Molecular Systems Biology 7: 516.
-
(2011)
Molecular Systems Biology
, vol.7
, pp. 516
-
-
Bachmann, J.1
Raue, A.2
Schilling, M.3
Böhm, M.4
Kreutz, C.5
-
8
-
-
29144434998
-
Computational processing and error reduction strategies for standardized quantitative data in biological networks
-
Schilling M, Maiwald T, Bohl S, Kollmann M, Kreutz C, et al. (2005) Computational processing and error reduction strategies for standardized quantitative data in biological networks. FEBS Journal 272: 6400-6411.
-
(2005)
FEBS Journal
, vol.272
, pp. 6400-6411
-
-
Schilling, M.1
Maiwald, T.2
Bohl, S.3
Kollmann, M.4
Kreutz, C.5
-
9
-
-
79251527894
-
One-source peptide/phosphopeptide standards for accurate phosphorylation degree determination
-
Hahn B, Böhm M, Raia V, Zinn N, Möller P, et al. (2011) One-source peptide/phosphopeptide standards for accurate phosphorylation degree determination. Proteomics 11: 490-494.
-
(2011)
Proteomics
, vol.11
, pp. 490-494
-
-
Hahn, B.1
Böhm, M.2
Raia, V.3
Zinn, N.4
Möller, P.5
-
10
-
-
35748945147
-
An error model for protein quantification
-
Kreutz C, Bartolome-Rodriguez MM, Maiwald T, Seidl M, Blum HE, et al. (2007) An error model for protein quantification. Bioinformatics 23: 2747-2753.
-
(2007)
Bioinformatics
, vol.23
, pp. 2747-2753
-
-
Kreutz, C.1
Bartolome-Rodriguez, M.M.2
Maiwald, T.3
Seidl, M.4
Blum, H.E.5
-
11
-
-
33644897539
-
Ubiquity of log-normal distributions in intra-cellular reaction dynamics
-
Furusawa C, Suzuki T, Kashiwagi A, Yomo T, Kaneko K, (2005) Ubiquity of log-normal distributions in intra-cellular reaction dynamics. Biophysics 1: 25-31.
-
(2005)
Biophysics
, vol.1
, pp. 25-31
-
-
Furusawa, C.1
Suzuki, T.2
Kashiwagi, A.3
Yomo, T.4
Kaneko, K.5
-
12
-
-
0001735517
-
On the mathematical foundations of theoretical statistics
-
Fisher R, (1922) On the mathematical foundations of theoretical statistics. Phil Trans Roy Soc A 222: 309-368.
-
(1922)
Phil Trans Roy Soc A
, vol.222
, pp. 309-368
-
-
Fisher, R.1
-
14
-
-
33745217791
-
SUNDIALS: Suite of nonlinear and differential/algebraic equation solvers
-
Hindmarsh A, Brown P, Grant K, Lee S, Serban R, et al. (2005) SUNDIALS: Suite of nonlinear and differential/algebraic equation solvers. ACM T Math Software 31: 363-396.
-
(2005)
ACM T Math Software
, vol.31
, pp. 363-396
-
-
Hindmarsh, A.1
Brown, P.2
Grant, K.3
Lee, S.4
Serban, R.5
-
19
-
-
0030303844
-
An interior, trust region approach for nonlinear minimization subject to bounds
-
Coleman T, Li Y, (1996) An interior, trust region approach for nonlinear minimization subject to bounds. SIAM Journal on Optimization 6: 418-445.
-
(1996)
SIAM Journal on Optimization
, vol.6
, pp. 418-445
-
-
Coleman, T.1
Li, Y.2
-
20
-
-
33751423943
-
Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems
-
Rodriguez-Fernandez M, Egea J, Banga J, (2006) Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems. BMC Bioinformatics 7: 483.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 483
-
-
Rodriguez-Fernandez, M.1
Egea, J.2
Banga, J.3
-
21
-
-
33846563823
-
Scatter search for chemical and bioprocess optimization
-
Egea J, Rodríguez-Fernández M, Banga J, Martí R, (2007) Scatter search for chemical and bioprocess optimization. Journal of Global Optimization 37: 481-503.
-
(2007)
Journal of Global Optimization
, vol.37
, pp. 481-503
-
-
Egea, J.1
Rodríguez-Fernández, M.2
Banga, J.3
Martí, R.4
-
22
-
-
0023977978
-
The simultaneous solution and sensitivity analysis of systems described by ordinary differential equations
-
Leis J, Kramer M, (1988) The simultaneous solution and sensitivity analysis of systems described by ordinary differential equations. ACM T Math Software 14: 45-60.
-
(1988)
ACM T Math Software
, vol.14
, pp. 45-60
-
-
Leis, J.1
Kramer, M.2
-
23
-
-
77954383034
-
Effective parameter estimation within a multi-dimensional population balance model framework
-
Ramachandran R, Barton P, (2010) Effective parameter estimation within a multi-dimensional population balance model framework. Chemical Engineering Science 65: 4884-4893.
-
(2010)
Chemical Engineering Science
, vol.65
, pp. 4884-4893
-
-
Ramachandran, R.1
Barton, P.2
-
24
-
-
10644259891
-
Symmetry and Integration Methods for Differential Equations
-
Heidelberg, Germany: Springer
-
Bluman G, Anco S (2010) Symmetry and Integration Methods for Differential Equations. Applied Mathematical Sciences. Heidelberg, Germany: Springer.
-
(2010)
Applied Mathematical Sciences
-
-
Bluman, G.1
Anco, S.2
-
25
-
-
78650680756
-
Identifiability and observability analysis for experimental design in non-linear dynamical models
-
Raue A, Becker V, Klingmüller U, Timmer J, (2010) Identifiability and observability analysis for experimental design in non-linear dynamical models. Chaos 20: 045105.
-
(2010)
Chaos
, vol.20
, pp. 045105
-
-
Raue, A.1
Becker, V.2
Klingmüller, U.3
Timmer, J.4
-
26
-
-
67650760503
-
Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood
-
Raue A, Kreutz C, Maiwald T, Bachmann J, Schilling M, et al. (2009) Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood. Bioinformatics 25: 1923-1929.
-
(2009)
Bioinformatics
, vol.25
, pp. 1923-1929
-
-
Raue, A.1
Kreutz, C.2
Maiwald, T.3
Bachmann, J.4
Schilling, M.5
-
27
-
-
84865642147
-
Likelihood based observability analysis and confidence intervals for predictions of dynamic models
-
Kreutz C, Raue A, Timmer J, (2012) Likelihood based observability analysis and confidence intervals for predictions of dynamic models. BMC Systems Biology 6: 120.
-
(2012)
BMC Systems Biology
, vol.6
, pp. 120
-
-
Kreutz, C.1
Raue, A.2
Timmer, J.3
-
28
-
-
84954932200
-
Teaching about approximate confidence regions based on maximum likelihood estimation
-
Meeker W, Escobar L, (1995) Teaching about approximate confidence regions based on maximum likelihood estimation. The American Statistician 49: 48-53.
-
(1995)
The American Statistician
, vol.49
, pp. 48-53
-
-
Meeker, W.1
Escobar, L.2
-
30
-
-
84859749049
-
An integrated strategy for prediction uncertainty analysis
-
Vanlier J, Tiemann C, Hilbers P, van Riel N, (2012) An integrated strategy for prediction uncertainty analysis. Bioinformatics 28: 1130-1135.
-
(2012)
Bioinformatics
, vol.28
, pp. 1130-1135
-
-
Vanlier, J.1
Tiemann, C.2
Hilbers, P.3
van Riel, N.4
-
31
-
-
84874150433
-
Joining forces of Bayesian and frequentist methodology: A study for inference in the presence of non-identifiability
-
Raue A, Kreutz C, Theis F, Timmer J, (2013) Joining forces of Bayesian and frequentist methodology: A study for inference in the presence of non-identifiability. Phil Trans Roy Soc A 371: 20110544.
-
(2013)
Phil Trans Roy Soc A
, vol.371
, pp. 20110544
-
-
Raue, A.1
Kreutz, C.2
Theis, F.3
Timmer, J.4
-
32
-
-
84888027235
-
High-dimensional Bayesian parameter estimation: Case study for a model of JAK2/STAT5 signaling
-
In press
-
Hug S, Raue A, Hasenauer J, Bachmann J, Klingmüller U, et al. (2013) High-dimensional Bayesian parameter estimation: Case study for a model of JAK2/STAT5 signaling. Mathematical Biosciences: In press.
-
(2013)
Mathematical Biosciences
-
-
Hug, S.1
Raue, A.2
Hasenauer, J.3
Bachmann, J.4
Klingmüller, U.5
-
34
-
-
40749162829
-
LibSBML: an API library for SBML
-
Bornstein B, Keating S, Jouraku A, Hucka M, (2008) LibSBML: an API library for SBML. Bioinformatics 24: 880-881.
-
(2008)
Bioinformatics
, vol.24
, pp. 880-881
-
-
Bornstein, B.1
Keating, S.2
Jouraku, A.3
Hucka, M.4
-
35
-
-
0017126376
-
Time delay in simple chemostat models
-
MacDonald N, (1976) Time delay in simple chemostat models. Biotechnology and Bioengineering 18: 805-812.
-
(1976)
Biotechnology and Bioengineering
, vol.18
, pp. 805-812
-
-
MacDonald, N.1
|