-
1
-
-
34547100313
-
Structure and function of DnaA N-terminal domains: specific sites and mechanisms in inter-DnaA interaction and in DnaB helicase loading on oriC
-
Abe, Y., Jo, T., Matsuda, Y., Matsunaga, C., Katayama, T., and Ueda, T. (2007) Structure and function of DnaA N-terminal domains: specific sites and mechanisms in inter-DnaA interaction and in DnaB helicase loading on oriC. J Biol Chem 282: 17816-17827.
-
(2007)
J Biol Chem
, vol.282
, pp. 17816-17827
-
-
Abe, Y.1
Jo, T.2
Matsuda, Y.3
Matsunaga, C.4
Katayama, T.5
Ueda, T.6
-
2
-
-
84866404499
-
The primosomal protein DnaD inhibits cooperative DNA binding by the replication initiator DnaA in Bacillus subtilis
-
Bonilla, C.Y., and Grossman, A.D. (2012) The primosomal protein DnaD inhibits cooperative DNA binding by the replication initiator DnaA in Bacillus subtilis. J Bacteriol 194: 5110-5117.
-
(2012)
J Bacteriol
, vol.194
, pp. 5110-5117
-
-
Bonilla, C.Y.1
Grossman, A.D.2
-
3
-
-
0024284091
-
Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome
-
Bramhill, D., and Kornberg, A. (1988) Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome. Cell 52: 743-755.
-
(1988)
Cell
, vol.52
, pp. 743-755
-
-
Bramhill, D.1
Kornberg, A.2
-
4
-
-
84868306613
-
Chromosomal replication initiation machinery of low-G+C-content Firmicutes
-
Briggs, G.S., Smits, W.K., and Soultanas, P. (2012) Chromosomal replication initiation machinery of low-G+C-content Firmicutes. J Bacteriol 194: 5162-5170.
-
(2012)
J Bacteriol
, vol.194
, pp. 5162-5170
-
-
Briggs, G.S.1
Smits, W.K.2
Soultanas, P.3
-
5
-
-
45749100545
-
The functional analysis of YabA, which interacts with DnaA and regulates initiation of chromosome replication in Bacillus subtilis
-
Cho, E., Ogasawara, N., and Ishikawa, S. (2008) The functional analysis of YabA, which interacts with DnaA and regulates initiation of chromosome replication in Bacillus subtilis. Genes Genet Syst 83: 111-125.
-
(2008)
Genes Genet Syst
, vol.83
, pp. 111-125
-
-
Cho, E.1
Ogasawara, N.2
Ishikawa, S.3
-
6
-
-
0027381536
-
Replicatively active complexes of DnaA protein and the Escherichia coli chromosomal origin observed in the electron microscope
-
Crooke, E., Thresher, R., Hwang, D.S., Griffith, J., and Kornberg, A. (1993) Replicatively active complexes of DnaA protein and the Escherichia coli chromosomal origin observed in the electron microscope. J Mol Biol 233: 16-24.
-
(1993)
J Mol Biol
, vol.233
, pp. 16-24
-
-
Crooke, E.1
Thresher, R.2
Hwang, D.S.3
Griffith, J.4
Kornberg, A.5
-
7
-
-
77956259937
-
Origin remodeling and opening in bacteria rely on distinct assembly states of the DnaA initiator
-
Duderstadt, K.E., Mott, M.L., Crisona, N.J., Chuang, K., Yang, H., and Berger, J.M. (2010) Origin remodeling and opening in bacteria rely on distinct assembly states of the DnaA initiator. J Biol Chem 285: 28229-28239.
-
(2010)
J Biol Chem
, vol.285
, pp. 28229-28239
-
-
Duderstadt, K.E.1
Mott, M.L.2
Crisona, N.J.3
Chuang, K.4
Yang, H.5
Berger, J.M.6
-
8
-
-
80054029342
-
DNA stretching by bacterial initiators promotes replication origin opening
-
Duderstadt, K.E., Chuang, K., and Berger, J.M. (2011) DNA stretching by bacterial initiators promotes replication origin opening. Nature 478: 209-213.
-
(2011)
Nature
, vol.478
, pp. 209-213
-
-
Duderstadt, K.E.1
Chuang, K.2
Berger, J.M.3
-
9
-
-
0037119995
-
The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation
-
Erzberger, J.P., Pirruccello, M.M., and Berger, J.M. (2002) The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation. EMBO J 21: 4763-4773.
-
(2002)
EMBO J
, vol.21
, pp. 4763-4773
-
-
Erzberger, J.P.1
Pirruccello, M.M.2
Berger, J.M.3
-
10
-
-
33746860263
-
Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling
-
Erzberger, J.P., Mott, M.L., and Berger, J.M. (2006) Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling. Nat Struct Mol Biol 13: 676-683.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 676-683
-
-
Erzberger, J.P.1
Mott, M.L.2
Berger, J.M.3
-
11
-
-
21644437635
-
An essential tryptophan of Escherichia coli DnaA protein functions in oligomerization at the E. coli replication origin
-
Felczak, M.M., Simmons, L.A., and Kaguni, J.M. (2005) An essential tryptophan of Escherichia coli DnaA protein functions in oligomerization at the E. coli replication origin. J Biol Chem 280: 24627-24633.
-
(2005)
J Biol Chem
, vol.280
, pp. 24627-24633
-
-
Felczak, M.M.1
Simmons, L.A.2
Kaguni, J.M.3
-
12
-
-
0038476181
-
Structural basis of replication origin recognition by the DnaA protein
-
Fujikawa, N., Kurumizaka, H., Nureki, O., Terada, T., Shirouzu, M., Katayama, T., and Yokoyama, S. (2003) Structural basis of replication origin recognition by the DnaA protein. Nucleic Acids Res 31: 2077-2086.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2077-2086
-
-
Fujikawa, N.1
Kurumizaka, H.2
Nureki, O.3
Terada, T.4
Shirouzu, M.5
Katayama, T.6
Yokoyama, S.7
-
13
-
-
0025292506
-
Purification and characterization of an initiation protein for chromosomal replication, DnaA, in Bacillus subtilis
-
Fukuoka, T., Moriya, S., Yoshikawa, H., and Ogasawara, N. (1990) Purification and characterization of an initiation protein for chromosomal replication, DnaA, in Bacillus subtilis. J Biochem (Tokyo) 107: 732-739.
-
(1990)
J Biochem (Tokyo)
, vol.107
, pp. 732-739
-
-
Fukuoka, T.1
Moriya, S.2
Yoshikawa, H.3
Ogasawara, N.4
-
14
-
-
70349932060
-
YabA of Bacillus subtilis controls DnaA-mediated replication initiation but not the transcriptional response to replication stress
-
Goranov, A.I., Breier, A.M., Merrikh, H., and Grossman, A.D. (2009) YabA of Bacillus subtilis controls DnaA-mediated replication initiation but not the transcriptional response to replication stress. Mol Microbiol 74: 454-466.
-
(2009)
Mol Microbiol
, vol.74
, pp. 454-466
-
-
Goranov, A.I.1
Breier, A.M.2
Merrikh, H.3
Grossman, A.D.4
-
15
-
-
20344367271
-
Bacillus subtilis YabA is involved in determining the timing and synchrony of replication initiation
-
Hayashi, M., Ogura, Y., Harry, E.J., Ogasawara, N., and Moriya, S. (2005) Bacillus subtilis YabA is involved in determining the timing and synchrony of replication initiation. FEMS Microbiol Lett 247: 73-79.
-
(2005)
FEMS Microbiol Lett
, vol.247
, pp. 73-79
-
-
Hayashi, M.1
Ogura, Y.2
Harry, E.J.3
Ogasawara, N.4
Moriya, S.5
-
16
-
-
0035108406
-
DnaD protein of Bacillus subtilis interacts with DnaA, the initiator protein of replication
-
Ishigo-Oka, D., Ogasawara, N., and Moriya, S. (2001) DnaD protein of Bacillus subtilis interacts with DnaA, the initiator protein of replication. J Bacteriol 183: 2148-2150.
-
(2001)
J Bacteriol
, vol.183
, pp. 2148-2150
-
-
Ishigo-Oka, D.1
Ogasawara, N.2
Moriya, S.3
-
17
-
-
1642325936
-
Evolutionary history and higher order classification of AAA+ ATPases
-
Iyer, L.M., Leipe, D.D., Koonin, E.V., and Aravind, L. (2004) Evolutionary history and higher order classification of AAA+ ATPases. J Struct Biol 146: 11-31.
-
(2004)
J Struct Biol
, vol.146
, pp. 11-31
-
-
Iyer, L.M.1
Leipe, D.D.2
Koonin, E.V.3
Aravind, L.4
-
18
-
-
84872592804
-
DnaA binding locus datA promotes DnaA-ATP hydrolysis to enable cell cycle-coordinated replication initiation
-
Kasho, K., and Katayama, T. (2013) DnaA binding locus datA promotes DnaA-ATP hydrolysis to enable cell cycle-coordinated replication initiation. Proc Natl Acad Sci USA 110: 936-941.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 936-941
-
-
Kasho, K.1
Katayama, T.2
-
19
-
-
76949086750
-
Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC
-
Katayama, T., Ozaki, S., Keyamura, K., and Fujimitsu, K. (2010) Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC. Nat Rev Microbiol 8: 163-170.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 163-170
-
-
Katayama, T.1
Ozaki, S.2
Keyamura, K.3
Fujimitsu, K.4
-
20
-
-
75349083245
-
DnaA, ORC, and Cdc6: similarity beyond the domains of life and diversity
-
Kawakami, H., and Katayama, T. (2010) DnaA, ORC, and Cdc6: similarity beyond the domains of life and diversity. Biochem Cell Biol 88: 49-62.
-
(2010)
Biochem Cell Biol
, vol.88
, pp. 49-62
-
-
Kawakami, H.1
Katayama, T.2
-
21
-
-
71749100656
-
Rapid exchange of bound ADP on the Staphylococcus aureus replication initiation protein DnaA
-
Kurokawa, K., Mizumura, H., Takaki, T., Ishii, Y., Ichihashi, N., Lee, B.L., and Sekimizu, K. (2009) Rapid exchange of bound ADP on the Staphylococcus aureus replication initiation protein DnaA. J Biol Chem 284: 34201-34210.
-
(2009)
J Biol Chem
, vol.284
, pp. 34201-34210
-
-
Kurokawa, K.1
Mizumura, H.2
Takaki, T.3
Ishii, Y.4
Ichihashi, N.5
Lee, B.L.6
Sekimizu, K.7
-
22
-
-
80053993314
-
Control of the replication initiator DnaA by an anti-cooperativity factor
-
Merrikh, H., and Grossman, A.D. (2011) Control of the replication initiator DnaA by an anti-cooperativity factor. Mol Microbiol 82: 434-446.
-
(2011)
Mol Microbiol
, vol.82
, pp. 434-446
-
-
Merrikh, H.1
Grossman, A.D.2
-
23
-
-
73249150967
-
Bacterial origin recognition complexes direct assembly of higher-order DnaA oligomeric structures
-
Miller, D.T., Grimwade, J.E., Betteridge, T., Rozgaja, T., Torgue, J.J., and Leonard, A.C. (2009) Bacterial origin recognition complexes direct assembly of higher-order DnaA oligomeric structures. Proc Natl Acad Sci USA 106: 18479-18484.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 18479-18484
-
-
Miller, D.T.1
Grimwade, J.E.2
Betteridge, T.3
Rozgaja, T.4
Torgue, J.J.5
Leonard, A.C.6
-
24
-
-
70350155327
-
A role for nonessential domain II of initiator protein, DnaA, in replication control
-
Molt, K.L., Sutera, V.A., Jr, Moore, K.K., and Lovett, S.T. (2009) A role for nonessential domain II of initiator protein, DnaA, in replication control. Genetics 183: 39-49.
-
(2009)
Genetics
, vol.183
, pp. 39-49
-
-
Molt, K.L.1
Sutera Jr, V.A.2
Moore, K.K.3
Lovett, S.T.4
-
25
-
-
34247271405
-
DNA replication initiation: mechanisms and regulation in bacteria
-
Mott, M.L., and Berger, J.M. (2007) DNA replication initiation: mechanisms and regulation in bacteria. Nat Rev Microbiol 5: 343-354.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 343-354
-
-
Mott, M.L.1
Berger, J.M.2
-
26
-
-
52949106530
-
Dynamic control of the DNA replication initiation protein DnaA by Soj/ParA
-
Murray, H., and Errington, J. (2008) Dynamic control of the DNA replication initiation protein DnaA by Soj/ParA. Cell 135: 74-84.
-
(2008)
Cell
, vol.135
, pp. 74-84
-
-
Murray, H.1
Errington, J.2
-
27
-
-
0032969563
-
AAA+: a class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes
-
Neuwald, A.F., Aravind, L., Spouge, J.L., and Koonin, E.V. (1999) AAA+: a class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 9: 27-43.
-
(1999)
Genome Res
, vol.9
, pp. 27-43
-
-
Neuwald, A.F.1
Aravind, L.2
Spouge, J.L.3
Koonin, E.V.4
-
28
-
-
0037177830
-
A nucleotide switch in the Escherichia coli DnaA protein initiates chromosomal replication: evidence from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivo
-
Nishida, S., Fujimitsu, K., Sekimizu, K., Ohmura, T., Ueda, T., and Katayama, T. (2002) A nucleotide switch in the Escherichia coli DnaA protein initiates chromosomal replication: evidence from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivo. J Biol Chem 277: 14986-14995.
-
(2002)
J Biol Chem
, vol.277
, pp. 14986-14995
-
-
Nishida, S.1
Fujimitsu, K.2
Sekimizu, K.3
Ohmura, T.4
Ueda, T.5
Katayama, T.6
-
29
-
-
0037062435
-
An expanded view of bacterial DNA replication
-
Noirot-Gros, M.F., Dervyn, E., Wu, L.J., Mervelet, P., Errington, J., Ehrlich, S.D., and Noirot, P. (2002) An expanded view of bacterial DNA replication. Proc Natl Acad Sci USA 99: 8342-8347.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 8342-8347
-
-
Noirot-Gros, M.F.1
Dervyn, E.2
Wu, L.J.3
Mervelet, P.4
Errington, J.5
Ehrlich, S.D.6
Noirot, P.7
-
30
-
-
33144457589
-
Functional dissection of YabA, a negative regulator of DNA replication initiation in Bacillus subtilis
-
Noirot-Gros, M.F., Velten, M., Yoshimura, M., McGovern, S., Morimoto, T., Ehrlich, S.D., etal. (2006) Functional dissection of YabA, a negative regulator of DNA replication initiation in Bacillus subtilis. Proc Natl Acad Sci USA 103: 2368-2373.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 2368-2373
-
-
Noirot-Gros, M.F.1
Velten, M.2
Yoshimura, M.3
McGovern, S.4
Morimoto, T.5
Ehrlich, S.D.6
-
31
-
-
84855259882
-
Regulation of chromosomal replication initiation by oriC-proximal DnaA-box clusters in Bacillus subtilis
-
Okumura, H., Yoshimura, M., Ueki, M., Oshima, T., Ogasawara, N., and Ishikawa, S. (2012) Regulation of chromosomal replication initiation by oriC-proximal DnaA-box clusters in Bacillus subtilis. Nucleic Acids Res 40: 220-234.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 220-234
-
-
Okumura, H.1
Yoshimura, M.2
Ueki, M.3
Oshima, T.4
Ogasawara, N.5
Ishikawa, S.6
-
32
-
-
84857873014
-
Highly organized DnaA-oriC complexes recruit the single-stranded DNA for replication initiation
-
Ozaki, S., and Katayama, T. (2012) Highly organized DnaA-oriC complexes recruit the single-stranded DNA for replication initiation. Nucleic Acids Res 40: 1648-1665.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 1648-1665
-
-
Ozaki, S.1
Katayama, T.2
-
33
-
-
43749087597
-
A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin
-
Ozaki, S., Kawakami, H., Nakamura, K., Fujikawa, N., Kagawa, W., Park, S.Y., etal. (2008) A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin. J Biol Chem 283: 8351-8362.
-
(2008)
J Biol Chem
, vol.283
, pp. 8351-8362
-
-
Ozaki, S.1
Kawakami, H.2
Nakamura, K.3
Fujikawa, N.4
Kagawa, W.5
Park, S.Y.6
-
34
-
-
0024462061
-
In vivo studies of DnaA binding to the origin of replication of Escherichia coli
-
Samitt, C.E., Hansen, F.G., Miller, J.F., and Schaechter, M. (1989) In vivo studies of DnaA binding to the origin of replication of Escherichia coli. EMBO J 8: 989-993.
-
(1989)
EMBO J
, vol.8
, pp. 989-993
-
-
Samitt, C.E.1
Hansen, F.G.2
Miller, J.F.3
Schaechter, M.4
-
35
-
-
84858794276
-
Soj/ParA stalls DNA replication by inhibiting helix formation of the initiator protein DnaA
-
Scholefield, G., Errington, J., and Murray, H. (2012) Soj/ParA stalls DNA replication by inhibiting helix formation of the initiator protein DnaA. EMBO J 31: 1542-1555.
-
(2012)
EMBO J
, vol.31
, pp. 1542-1555
-
-
Scholefield, G.1
Errington, J.2
Murray, H.3
-
36
-
-
0023658349
-
ATP activates dnaA protein in initiating replication of plasmids bearing the origin of the E. coli chromosome
-
Sekimizu, K., Bramhill, D., and Kornberg, A. (1987) ATP activates dnaA protein in initiating replication of plasmids bearing the origin of the E. coli chromosome. Cell 50: 259-265.
-
(1987)
Cell
, vol.50
, pp. 259-265
-
-
Sekimizu, K.1
Bramhill, D.2
Kornberg, A.3
-
37
-
-
74349131115
-
Ordered association of helicase loader proteins with the Bacillus subtilis origin of replication in vivo
-
Smits, W.K., Goranov, A.I., and Grossman, A.D. (2010) Ordered association of helicase loader proteins with the Bacillus subtilis origin of replication in vivo. Mol Microbiol 75: 452-461.
-
(2010)
Mol Microbiol
, vol.75
, pp. 452-461
-
-
Smits, W.K.1
Goranov, A.I.2
Grossman, A.D.3
-
38
-
-
57049113817
-
Cell-cycle-dependent spatial sequestration of the DnaA replication initiator protein in Bacillus subtilis
-
Soufo, C.D., Soufo, H.J., Noirot-Gros, M.F., Steindorf, A., Noirot, P., and Graumann, P.L. (2008) Cell-cycle-dependent spatial sequestration of the DnaA replication initiator protein in Bacillus subtilis. Dev Cell 15: 935-941.
-
(2008)
Dev Cell
, vol.15
, pp. 935-941
-
-
Soufo, C.D.1
Soufo, H.J.2
Noirot-Gros, M.F.3
Steindorf, A.4
Noirot, P.5
Graumann, P.L.6
-
39
-
-
0035869023
-
Mechanism of origin unwinding: sequential binding of DnaA to double- and single-stranded DNA
-
Speck, C., and Messer, W. (2001) Mechanism of origin unwinding: sequential binding of DnaA to double- and single-stranded DNA. EMBO J 20: 1469-1476.
-
(2001)
EMBO J
, vol.20
, pp. 1469-1476
-
-
Speck, C.1
Messer, W.2
-
40
-
-
36549048006
-
The AAA+ superfamily - a myriad of motions
-
Tucker, P.A., and Sallai, L. (2007) The AAA+ superfamily - a myriad of motions. Curr Opin Struct Biol 17: 641-652.
-
(2007)
Curr Opin Struct Biol
, vol.17
, pp. 641-652
-
-
Tucker, P.A.1
Sallai, L.2
-
41
-
-
0032844522
-
The N-terminus promotes oligomerization of the Escherichia coli initiator protein DnaA
-
Weigel, C., Schmidt, A., Seitz, H., Tungler, D., Welzeck, M., and Messer, W. (1999) The N-terminus promotes oligomerization of the Escherichia coli initiator protein DnaA. Mol Microbiol 34: 53-66.
-
(1999)
Mol Microbiol
, vol.34
, pp. 53-66
-
-
Weigel, C.1
Schmidt, A.2
Seitz, H.3
Tungler, D.4
Welzeck, M.5
Messer, W.6
-
42
-
-
60649100510
-
ORC proteins: marking the start
-
Wigley, D.B. (2009) ORC proteins: marking the start. Curr Opin Struct Biol 19: 72-78.
-
(2009)
Curr Opin Struct Biol
, vol.19
, pp. 72-78
-
-
Wigley, D.B.1
|