A user's guide to quantitative and comparative analysis of metagenomic datasets

Methods in Enzymology

Volumn 531, Issue , 2013, Pages 525-547

  Luo, Chengwei ^a,b   Rodriguez R, Luis M ^a   Konstantinidis, Konstantinos T ^a,b  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

^b Georgia Institute of Technology   (United States)

Author keywords

Assembly; Community diversity; Comparative analysis; Coverage estimation; Differentially abundant genes; Metagenomics; MeTaxa; Nonpareil; Taxonomic assignment

Indexed keywords

RNA 16S;

ACID MINE DRAINAGE; ALGORITHM; ANALYSIS; ARTICLE; COMPARATIVE ANALYSIS; COMPUTER MODEL; DATA BASE; DNA DNA HYBRIDIZATION; DNA SEQUENCE; EXPERIMENTAL DESIGN; GENE SEQUENCE; GENETIC VARIABILITY; GENOME SIZE; HORIZONTAL GENE TRANSFER; HUMAN; MARKER GENE; METAGENOME; METAGENOMICS; MICROBIAL COMMUNITY; NONHUMAN; ORGANISM COMMUNITY; PRIORITY JOURNAL; PROTEOMICS; QUANTITATIVE ANALYSIS; REFERENCE DATABASE; TARGET ORGANISM; TRANSCRIPTOMICS;

ASSEMBLY; COMMUNITY DIVERSITY; COMPARATIVE ANALYSIS; COVERAGE ESTIMATION; DIFFERENTIALLY ABUNDANT GENES; METAGENOMICS; METAXA; NONPAREIL; TAXONOMIC ASSIGNMENT;

ALGORITHMS; BACTERIA; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; GENOME, BACTERIAL; METAGENOMICS;

EID: 84884557900     PISSN: 00766879     EISSN: 15577988     Source Type: Book Series    
DOI: 10.1016/B978-0-12-407863-5.00023-X     Document Type: Chapter

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