메뉴 건너뛰기




Volumn 5, Issue 6, 2013, Pages 1220-1232

Genomic diversity of "deep ecotype" Alteromonas macleodii isolates: Evidence for pan-mediterranean clonal frames

Author keywords

Alteromonas macleodii; Horizontal gene transfer; Microevolution; Recombination; SNPs

Indexed keywords

ALTEROMONAS; BACTERIAL GENOME; ECOTYPE; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENETICS; GENOMIC ISLAND; HORIZONTAL GENE TRANSFER; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; SINGLE NUCLEOTIDE POLYMORPHISM; SOUTHERN EUROPE; ALTEROMONAS MACLEODII; ARTICLE; MICROEVOLUTION; RECOMBINATION; SNPS;

EID: 84884395137     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evt089     Document Type: Article
Times cited : (53)

References (66)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25(17):3389-3402.
    • (1997) Nucleic Acids Res. , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1
  • 2
    • 84873890915 scopus 로고    scopus 로고
    • A new global reconstruction of temperature changes at the Last Glacial Maximum
    • Annan JD, Hargreaves JC. 2013. A new global reconstruction of temperature changes at the Last Glacial Maximum. Clim Past. 9 (1) 367-376.
    • (2013) Clim Past. , vol.9 , Issue.1 , pp. 367-376
    • Annan, J.D.1    Hargreaves, J.C.2
  • 3
    • 79959842126 scopus 로고    scopus 로고
    • Genomic island variability facilitates Prochlorococcus-virus coexistence
    • Avrani S, Wurtzel O, Sharon I, Sorek R, Lindell D. 2011. Genomic island variability facilitates Prochlorococcus-virus coexistence. Nature 474(7353):604-608.
    • (2011) Nature , vol.474 , Issue.7353 , pp. 604-608
    • Avrani, S.1    Wurtzel, O.2    Sharon, I.3    Sorek, R.4    Lindell, D.5
  • 4
    • 70350641005 scopus 로고    scopus 로고
    • Genome evolution and adaptation in a long-term experiment with Escherichia coli
    • Barrick JE, et al. 2009. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461(7268):1243-1247.
    • (2009) Nature , vol.461 , Issue.7268 , pp. 1243-1247
    • Barrick, J.E.1
  • 5
    • 0036966973 scopus 로고    scopus 로고
    • Comparison of SXT and R391, two conjugative integrating elements: Definition of a genetic backbone for the mobilization of resistance determinants
    • Beaber JW, Burrus V, Hochhut B, Waldor MK. 2002. Comparison of SXT and R391, two conjugative integrating elements: definition of a genetic backbone for the mobilization of resistance determinants. Cell Mol Life Sci. 59 (12) 2065-2070.
    • (2002) Cell Mol Life Sci. , vol.59 , Issue.12 , pp. 2065-2070
    • Beaber, J.W.1    Burrus, V.2    Hochhut, B.3    Waldor, M.K.4
  • 6
    • 34347364443 scopus 로고    scopus 로고
    • Integrons: Mobilizable platforms that promote genetic diversity in bacteria
    • Boucher Y, Labbate M, Koenig JE, Stokes HW. 2007. Integrons: mobilizable platforms that promote genetic diversity in bacteria. Trends Microbiol. 15 (7) 301-309.
    • (2007) Trends Microbiol. , vol.15 , Issue.7 , pp. 301-309
    • Boucher, Y.1    Labbate, M.2    Koenig, J.E.3    Stokes, H.W.4
  • 7
    • 24044433279 scopus 로고    scopus 로고
    • ACT: The Artemis comparison tool
    • Carver TJ, et al. 2005. ACT: the Artemis comparison tool. Bioinformatics 21 (16) 3422-3423.
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3422-3423
    • Carver, T.J.1
  • 8
    • 78649694766 scopus 로고    scopus 로고
    • Genetic basis of growth adaptation of Escherichia coli after deletion of pgi, a major metabolic gene
    • Charusanti P, et al. 2010. Genetic basis of growth adaptation of Escherichia coli after deletion of pgi, a major metabolic gene. PLoS Genet. 6(11):e1001186.
    • (2010) PLoS Genet. , vol.6 , Issue.11
    • Charusanti, P.1
  • 9
    • 78649868522 scopus 로고    scopus 로고
    • Ecosystem-specific selection pressures revealed through comparative population genomics
    • Coleman ML, Chisholm SW. 2010. Ecosystem-specific selection pressures revealed through comparative population genomics. Proc Natl Acad Sci USA. 107:18634-18639.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 18634-18639
    • Coleman, M.L.1    Chisholm, S.W.2
  • 10
    • 75349114758 scopus 로고    scopus 로고
    • Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations
    • Conrad T, et al. 2009. Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations. Genome Biol. 10(10):R118.
    • (2009) Genome Biol. , vol.10 , Issue.10
    • Conrad, T.1
  • 11
    • 79960104605 scopus 로고    scopus 로고
    • Microbial laboratory evolution in the era of genome-scale science
    • Conrad TM, Lewis NE, Palsson BO. 2011. Microbial laboratory evolution in the era of genome-scale science. Mol Syst Biol. 7:509.
    • (2011) Mol Syst Biol. , vol.7 , pp. 509
    • Conrad, T.M.1    Lewis, N.E.2    Palsson, B.O.3
  • 12
    • 84873046564 scopus 로고    scopus 로고
    • Comparative analysis of mobilizable genomic islands
    • Daccord A, Ceccarelli D, Rodrigue S, Burrus V. 2013. Comparative analysis of mobilizable genomic islands. J Bacteriol. 195(3):606-614.
    • (2013) J Bacteriol. , vol.195 , Issue.3 , pp. 606-614
    • Daccord, A.1    Ceccarelli, D.2    Rodrigue, S.3    Burrus, V.4
  • 13
    • 3543051830 scopus 로고    scopus 로고
    • Mauve: Multiple alignment of conserved genomic sequence with rearrangements
    • Darling A C E, Mau B, Blattner FR, Perna NT. 2004. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res. 14(7):1394-1403.
    • (2004) Genome Res. , vol.14 , Issue.7 , pp. 1394-1403
    • Darling, A.C.E.1    Mau, B.2    Blattner, F.R.3    Perna, N.T.4
  • 14
    • 34249027580 scopus 로고    scopus 로고
    • Inference of bacterial microevolution using multilocus sequence data
    • Didelot X, Falush D. 2007. Inference of bacterial microevolution using multilocus sequence data. Genetics 175(3):1251-1266.
    • (2007) Genetics , vol.175 , Issue.3 , pp. 1251-1266
    • Didelot, X.1    Falush, D.2
  • 15
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: A multiple sequence alignment method with reduced time and space complexity
    • Edgar R. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5(1):113.
    • (2004) BMC Bioinformatics , vol.5 , Issue.1 , pp. 113
    • Edgar, R.1
  • 16
    • 84876571362 scopus 로고    scopus 로고
    • Polyclonality of concurrent natural populations of Alteromonas macleodii
    • Gonzaga A, et al. 2012. Polyclonality of concurrent natural populations of Alteromonas macleodii. Genome Biol Evol. 4(12):1360-1374.
    • (2012) Genome Biol Evol. , vol.4 , Issue.12 , pp. 1360-1374
    • Gonzaga, A.1
  • 17
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser. 41:95-98.
    • (1999) Nucleic Acids Symp Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 18
    • 75649084906 scopus 로고    scopus 로고
    • Evolution of MRSA during hospital transmission and intercontinental spread
    • Harris SR, et al. 2010. Evolution of MRSA during hospital transmission and intercontinental spread. Science 327(5964):469-474.
    • (2010) Science , vol.327 , Issue.5964 , pp. 469-474
    • Harris, S.R.1
  • 19
    • 0026781517 scopus 로고
    • Site-specific integration of the Haemophilus influenzae bacteriophage HP 1: Location of the boundaries of the phage attachment site
    • Hauser MA, Scocca JJ. 1992. Site-specific integration of the Haemophilus influenzae bacteriophage HP 1: location of the boundaries of the phage attachment site. J Bacteriol. 174(20):6674-6677.
    • (1992) J Bacteriol. , vol.174 , Issue.20 , pp. 6674-6677
    • Hauser, M.A.1    Scocca, J.J.2
  • 20
    • 84876343851 scopus 로고    scopus 로고
    • Genome sequencing identifies two nearly unchanged strains of persistent Listeria monocytogenes isolated in two different fish processing plants sampled six years apart
    • Holch A, et al. 2013. Genome sequencing identifies two nearly unchanged strains of persistent Listeria monocytogenes isolated in two different fish processing plants sampled six years apart. Appl Environ Microbiol. 79:2944-2951.
    • (2013) Appl Environ Microbiol. , vol.79 , pp. 2944-2951
    • Holch, A.1
  • 21
    • 51649088898 scopus 로고    scopus 로고
    • Biogeography of the ubiquitous marine bacterium Alteromonas macleodii determined by multilocus sequence analysis
    • Ivars-Martínez E, D'Auria G, et al. 2008. Biogeography of the ubiquitous marine bacterium Alteromonas macleodii determined by multilocus sequence analysis. Mol Ecol. 17(18):4092-4106.
    • (2008) Mol Ecol. , vol.17 , Issue.18 , pp. 4092-4106
    • Ivars-Martínez, E.1    D'Auria, G.2
  • 22
    • 57349122987 scopus 로고    scopus 로고
    • Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter
    • Ivars-Martínez E, Martin-Cuadrado AB, et al. 2008. Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter. ISME J. 2(12):1194-1212.
    • (2008) ISME J. , vol.2 , Issue.12 , pp. 1194-1212
    • Ivars-Martínez, E.1    Martin-Cuadrado, A.B.2
  • 23
    • 0034716946 scopus 로고    scopus 로고
    • Genomic sequences of bacteriophages HK97 and HK022: Pervasive genetic mosaicism in the lambdoid bacteriophages
    • Juhala RJ, et al. 2000. Genomic sequences of bacteriophages HK97 and HK022:pervasive genetic mosaicism in the lambdoid bacteriophages. J Mol Biol. 299(1):27-51.
    • (2000) J Mol Biol. , vol.299 , Issue.1 , pp. 27-51
    • Juhala, R.J.1
  • 24
    • 0028266653 scopus 로고
    • Excision of a P4-like cryptic prophage leads to Alp protease expression in Escherichia coli
    • Kirby JE, Trempy JE, Gottesman S. 1994. Excision of a P4-like cryptic prophage leads to Alp protease expression in Escherichia coli. J Bacteriol. 176(7):2068-2081.
    • (1994) J Bacteriol. , vol.176 , Issue.7 , pp. 2068-2081
    • Kirby, J.E.1    Trempy, J.E.2    Gottesman, S.3
  • 25
    • 78449239214 scopus 로고    scopus 로고
    • Transition from positive to neutral in mutation fixation along with continuing rising fitness in thermal adaptive evolution
    • Kishimoto T, et al. 2010. Transition from positive to neutral in mutation fixation along with continuing rising fitness in thermal adaptive evolution. PLoS Genet. 6(10):e1001164.
    • (2010) PLoS Genet. , vol.6 , Issue.10
    • Kishimoto, T.1
  • 26
    • 14044262978 scopus 로고    scopus 로고
    • Genomic insights that advance the species definition for prokaryotes
    • Konstantinidis KT, Tiedje JM. 2005. Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci U S A. 102(7):2567-2572.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , Issue.7 , pp. 2567-2572
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 27
    • 2942538300 scopus 로고    scopus 로고
    • Versatile and open software for comparing large genomes
    • Kurtz S, et al. 2004. Versatile and open software for comparing large genomes. Genome Biol. 5(2):R12.
    • (2004) Genome Biol. , vol.5 , Issue.2
    • Kurtz, S.1
  • 28
    • 0023035074 scopus 로고
    • The structure of human thrombospondin, an adhesive glycoprotein with multiple calcium-binding sites and homologies with several different proteins
    • Lawler J, Hynes RO. 1986. The structure of human thrombospondin, an adhesive glycoprotein with multiple calcium-binding sites and homologies with several different proteins. J Cell Biol. 103(5):1635-1648.
    • (1986) J Cell Biol. , vol.103 , Issue.5 , pp. 1635-1648
    • Lawler, J.1    Hynes, R.O.2
  • 29
    • 33646757219 scopus 로고    scopus 로고
    • Flagellar glycosylation-a new component of the motility repertoire?
    • Logan SM. 2006. Flagellar glycosylation-a new component of the motility repertoire? Microbiology 152(5):1249-1262.
    • (2006) Microbiology , vol.152 , Issue.5 , pp. 1249-1262
    • Logan, S.M.1
  • 30
    • 17844377328 scopus 로고    scopus 로고
    • Genetic analysis of housekeeping genes reveals a deep-sea ecotype of Alteromonas macleodii in the Mediterranean Sea
    • López-López A, Bartual SG, Stal L, Onyshchenko O, Rodríguez-Valera F. 2005. Genetic analysis of housekeeping genes reveals a deep-sea ecotype of Alteromonas macleodii in the Mediterranean Sea. Environ Microbiol. 7(5):649-659.
    • (2005) Environ Microbiol. , vol.7 , Issue.5 , pp. 649-659
    • López-López, A.1    Bartual, S.G.2    Stal, L.3    Onyshchenko, O.4    Rodríguez-Valera, F.5
  • 31
    • 84867023857 scopus 로고    scopus 로고
    • Genomes of surface isolates of Alteromonas macleodii: The life of a widespread marine opportunistic copiotroph
    • López-Pérez M, et al. 2012. Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph. Sci Rep. 2:696.
    • (2012) Sci Rep. , vol.2 , pp. 696
    • López-Pérez, M.1
  • 32
    • 77957243284 scopus 로고    scopus 로고
    • RDP3: A flexible and fast computer program for analyzing recombination
    • Martin DP, et al. 2010. RDP3:a flexible and fast computer program for analyzing recombination. Bioinformatics 26(19):2462-2463.
    • (2010) Bioinformatics , vol.26 , Issue.19 , pp. 2462-2463
    • Martin, D.P.1
  • 33
    • 33747183094 scopus 로고    scopus 로고
    • Integrons: Agents of bacterial evolution
    • Mazel D. 2006. Integrons: agents of bacterial evolution. Nat Rev Microbiol. 4(8):608-620.
    • (2006) Nat Rev Microbiol. , vol.4 , Issue.8 , pp. 608-620
    • Mazel, D.1
  • 34
    • 78049286743 scopus 로고    scopus 로고
    • Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
    • McCarren J, et al. 2010. Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea. Proc Natl Acad Sci U S A. 107(38):16420-16427.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , Issue.38 , pp. 16420-16427
    • McCarren, J.1
  • 35
    • 77749295090 scopus 로고    scopus 로고
    • Mediterranean intermediate circulation estimated from Argo data in 2003-2010
    • Menna M, Poulain PM. 2010. Mediterranean intermediate circulation estimated from Argo data in 2003-2010. Ocean Sci. 6(1):331-343.
    • (2010) Ocean Sci. , vol.6 , Issue.1 , pp. 331-343
    • Menna, M.1    Poulain, P.M.2
  • 36
    • 0025133386 scopus 로고
    • Molecular evolution of the Escherichia coli chromosome. III. Clonal frames
    • Milkman R, Bridges MM. 1990. Molecular evolution of the Escherichia coli chromosome. III. Clonal frames. Genetics 126(3):505-517.
    • (1990) Genetics , vol.126 , Issue.3 , pp. 505-517
    • Milkman, R.1    Bridges, M.M.2
  • 37
    • 77957331293 scopus 로고    scopus 로고
    • Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families
    • Morelli G, et al. 2010. Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families. PLoS Genet. 6(7):e1001036.
    • (2010) PLoS Genet. , vol.6 , Issue.7
    • Morelli, G.1
  • 38
    • 80053133499 scopus 로고    scopus 로고
    • Evidence for several waves of global transmission in the seventh cholera pandemic
    • Mutreja A, et al. 2011. Evidence for several waves of global transmission in the seventh cholera pandemic. Nature 477(7365):462-465.
    • (2011) Nature , vol.477 , Issue.7365 , pp. 462-465
    • Mutreja, A.1
  • 39
    • 0026805942 scopus 로고
    • Rapid isolation of genomic DNA from Gram-negative bacteria
    • Neumann BR, Pospiech A, Schairer HU. 1992. Rapid isolation of genomic DNA from Gram-negative bacteria. Trends Genet. 8(10):332-333.
    • (1992) Trends Genet. , vol.8 , Issue.10 , pp. 332-333
    • Neumann, B.R.1    Pospiech, A.2    Schairer, H.U.3
  • 40
    • 77954065669 scopus 로고    scopus 로고
    • A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus
    • Nübel U, et al. 2010. A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus. PLoS Pathog. 6(4):e1000855.
    • (2010) PLoS Pathog. , vol.6 , Issue.4
    • Nübel, U.1
  • 41
    • 0033677613 scopus 로고    scopus 로고
    • Definition of the attI1 site of class 1 integrons
    • Partridge SR, et al. 2000. Definition of the attI1 site of class 1 integrons. Microbiology 146(11):2855-2864.
    • (2000) Microbiology , vol.146 , Issue.11 , pp. 2855-2864
    • Partridge, S.R.1
  • 42
    • 0037224962 scopus 로고    scopus 로고
    • Differential growth response of colonyforming a- and g-proteobacteria in dilution culture and nutrient addition experiments from Lake Kinneret (Israel), the Eastern Mediterranean Sea, and the Gulf of Eilat
    • Pinhassi J, Berman T. 2003. Differential growth response of colonyforming a- and g-proteobacteria in dilution culture and nutrient addition experiments from Lake Kinneret (Israel), the Eastern Mediterranean Sea, and the Gulf of Eilat. Appl Environ Microbiol. 69(1):199-211.
    • (2003) Appl Environ Microbiol. , vol.69 , Issue.1 , pp. 199-211
    • Pinhassi, J.1    Berman, T.2
  • 43
    • 78751579207 scopus 로고    scopus 로고
    • Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara
    • Quaiser A, Zivanovic Y, Moreira D, Lopez-Garcia P. 2011. Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara. ISME J. 5(2):285-304.
    • (2011) ISME J. , vol.5 , Issue.2 , pp. 285-304
    • Quaiser, A.1    Zivanovic, Y.2    Moreira, D.3    Lopez-Garcia, P.4
  • 44
    • 80055056483 scopus 로고    scopus 로고
    • Rates of mutation and host transmission for an Escherichia coli clone over 3 years
    • Reeves PR, et al. 2011. Rates of mutation and host transmission for an Escherichia coli clone over 3 years. PLoS One 6(10):e26907.
    • (2011) PLoS One , vol.6 , Issue.10
    • Reeves, P.R.1
  • 45
    • 38549158363 scopus 로고    scopus 로고
    • Think big-giant genes in bacteria
    • Reva O, Tümmler B. 2008. Think big-giant genes in bacteria. Environ Microbiol. 10(3):768-777.
    • (2008) Environ Microbiol. , vol.10 , Issue.3 , pp. 768-777
    • Reva, O.1    Tümmler, B.2
  • 46
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European molecular biology open software suite
    • Rice P, Longden I, Bleasby A. 2000. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 16(6):276-277.
    • (2000) Trends Genet. , vol.16 , Issue.6 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 47
    • 33644630612 scopus 로고    scopus 로고
    • Comparisons of dN/dS are time dependent for closely related bacterial genomes
    • Rocha E P C, et al. 2006. Comparisons of dN/dS are time dependent for closely related bacterial genomes. J Theor Biol. 239(2):226-235.
    • (2006) J Theor Biol. , vol.239 , Issue.2 , pp. 226-235
    • Rocha, E.P.C.1
  • 48
    • 84897584350 scopus 로고    scopus 로고
    • Is the pan-genome also a pan-selectome?
    • Rodriguez-Valera F, Ussery D. 2012. Is the pan-genome also a pan-selectome? F1000 Res. 1:16.
    • (2012) F1000 Res. , vol.1 , pp. 16
    • Rodriguez-Valera, F.1    Ussery, D.2
  • 49
    • 70350180460 scopus 로고    scopus 로고
    • Explaining microbial population genomics through phage predation
    • Rodriguez-Valera F, et al. 2009. Explaining microbial population genomics through phage predation. Nat Rev Microbiol. 7(11):828-836.
    • (2009) Nat Rev Microbiol. , vol.7 , Issue.11 , pp. 828-836
    • Rodriguez-Valera, F.1
  • 50
    • 33947238287 scopus 로고    scopus 로고
    • The Sorcerer II global ocean sampling expedition: Northwest Atlantic through eastern tropical Pacific
    • Rusch DB, et al. 2007. The Sorcerer II global ocean sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol. 5(3):e77.
    • (2007) PLoS Biol. , vol.5 , Issue.3
    • Rusch, D.B.1
  • 51
    • 0033635022 scopus 로고    scopus 로고
    • Artemis: Sequence visualization and annotation
    • Rutherford K, et al. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16(10):944-945.
    • (2000) Bioinformatics , vol.16 , Issue.10 , pp. 944-945
    • Rutherford, K.1
  • 52
    • 0035651017 scopus 로고    scopus 로고
    • Microbial communities in the chemocline of a hypersaline deep-sea basin (Urania Basin, Mediterranean Sea)
    • Sass AM, Sass H, Coolen M J L, Cypionka H, Overmann J. 2001. Microbial communities in the chemocline of a hypersaline deep-sea basin (Urania Basin, Mediterranean Sea). Appl Environ Microbiol. 67(12):5392-5402.
    • (2001) Appl Environ Microbiol. , vol.67 , Issue.12 , pp. 5392-5402
    • Sass, A.M.1    Sass, H.2    Coolen, M.J.L.3    Cypionka, H.4    Overmann, J.5
  • 53
    • 0034530892 scopus 로고    scopus 로고
    • Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: Changes in the genetic diversity of bacterial populations
    • Schäfer H, et al. 2006. Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: changes in the genetic diversity of bacterial populations. FEMS Microbiol Ecol. 34(3):243-253.
    • (2006) FEMS Microbiol Ecol. , vol.34 , Issue.3 , pp. 243-253
    • Schäfer, H.1
  • 54
    • 84859499489 scopus 로고    scopus 로고
    • Population genomics of early events in the ecological differentiation of bacteria
    • Shapiro BJ, et al. 2012. Population genomics of early events in the ecological differentiation of bacteria. Science 336(6077):48-51.
    • (2012) Science , vol.336 , Issue.6077 , pp. 48-51
    • Shapiro, B.J.1
  • 55
    • 84855281247 scopus 로고    scopus 로고
    • Transcriptional responses of surface water marine microbial assemblages to deep-sea water amendment
    • Shi Y, McCarren J, De Long EF. 2012. Transcriptional responses of surface water marine microbial assemblages to deep-sea water amendment. Environ Microbiol. 14(1):191-206.
    • (2012) Environ Microbiol. , vol.14 , Issue.1 , pp. 191-206
    • Shi, Y.1    McCarren, J.2    De Long, E.F.3
  • 56
    • 84871933403 scopus 로고    scopus 로고
    • Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep
    • Smedile F, et al. 2012. Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep. Environ Microbiol. 15(1):167-182.
    • (2012) Environ Microbiol. , vol.15 , Issue.1 , pp. 167-182
    • Smedile, F.1
  • 57
    • 18744372450 scopus 로고    scopus 로고
    • SNPsFinder, a web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes
    • Song J, Xu Y, White S, Miller K W P, Wolinsky M. 2005. SNPsFinder, a web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes. Bioinformatics 21(9):2083-2084.
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 2083-2084
    • Song, J.1    Xu, Y.2    White, S.3    Miller, K.W.P.4    Wolinsky, M.5
  • 58
    • 10644222759 scopus 로고    scopus 로고
    • Long-term oceanographic and ecological research in the Western English Channel
    • Southward AJ, et al. 2004. Long-term oceanographic and ecological research in the Western English Channel. Adv Mar. Biol. 47:1-105.
    • (2004) Adv Mar. Biol. , vol.47 , pp. 1-105
    • Southward, A.J.1
  • 59
    • 14644438364 scopus 로고    scopus 로고
    • Circular genome visualization and exploration using CGView
    • Stothard P, Wishart DS. 2005. Circular genome visualization and exploration using CGView. Bioinformatics 21(4):537-539.
    • (2005) Bioinformatics , vol.21 , Issue.4 , pp. 537-539
    • Stothard, P.1    Wishart, D.S.2
  • 60
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments
    • Suyama M, Torrents D, Bork P. 2006. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res. 34(2 Suppl), W609-W612.
    • (2006) Nucleic Acids Res. , vol.34 , Issue.2 SUPPL.
    • Suyama, M.1    Torrents, D.2    Bork, P.3
  • 61
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22(22):4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 62
    • 34548406920 scopus 로고    scopus 로고
    • High intraspecific recombination rate in a native population of Candidatus Pelagibacter ubique (SAR11)
    • Vergin KL, et al. 2007. High intraspecific recombination rate in a native population of Candidatus Pelagibacter ubique (SAR11). Environ Microbiol. 9(10):2430-2440.
    • (2007) Environ Microbiol. , vol.9 , Issue.10 , pp. 2430-2440
    • Vergin, K.L.1
  • 63
    • 70349451496 scopus 로고    scopus 로고
    • Control and benefits of CP4-57 prophage excision in Escherichia coli biofilms
    • Wang X, Kim Y, Wood TK. 2009. Control and benefits of CP4-57 prophage excision in Escherichia coli biofilms. ISME J. 3(10):1164-1179.
    • (2009) ISME J. , vol.3 , Issue.10 , pp. 1164-1179
    • Wang, X.1    Kim, Y.2    Wood, T.K.3
  • 64
    • 74249093709 scopus 로고    scopus 로고
    • Comparative ICE genomics: Insights into the evolution of the SXT/R391 family of ICEs
    • Wozniak R A F, et al. 2009. Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786.
    • (2009) PLoS Genet. , vol.5 , Issue.12
    • Wozniak, R.A.F.1
  • 65
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • Yang Z. 1998. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol Biol Evol. 15(5):568-573.
    • (1998) Mol Biol Evol. , vol.15 , Issue.5 , pp. 568-573
    • Yang, Z.1
  • 66
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18(5):821-829.
    • (2008) Genome Res. , vol.18 , Issue.5 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.