-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25(17):3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
-
2
-
-
84873890915
-
A new global reconstruction of temperature changes at the Last Glacial Maximum
-
Annan JD, Hargreaves JC. 2013. A new global reconstruction of temperature changes at the Last Glacial Maximum. Clim Past. 9 (1) 367-376.
-
(2013)
Clim Past.
, vol.9
, Issue.1
, pp. 367-376
-
-
Annan, J.D.1
Hargreaves, J.C.2
-
3
-
-
79959842126
-
Genomic island variability facilitates Prochlorococcus-virus coexistence
-
Avrani S, Wurtzel O, Sharon I, Sorek R, Lindell D. 2011. Genomic island variability facilitates Prochlorococcus-virus coexistence. Nature 474(7353):604-608.
-
(2011)
Nature
, vol.474
, Issue.7353
, pp. 604-608
-
-
Avrani, S.1
Wurtzel, O.2
Sharon, I.3
Sorek, R.4
Lindell, D.5
-
4
-
-
70350641005
-
Genome evolution and adaptation in a long-term experiment with Escherichia coli
-
Barrick JE, et al. 2009. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461(7268):1243-1247.
-
(2009)
Nature
, vol.461
, Issue.7268
, pp. 1243-1247
-
-
Barrick, J.E.1
-
5
-
-
0036966973
-
Comparison of SXT and R391, two conjugative integrating elements: Definition of a genetic backbone for the mobilization of resistance determinants
-
Beaber JW, Burrus V, Hochhut B, Waldor MK. 2002. Comparison of SXT and R391, two conjugative integrating elements: definition of a genetic backbone for the mobilization of resistance determinants. Cell Mol Life Sci. 59 (12) 2065-2070.
-
(2002)
Cell Mol Life Sci.
, vol.59
, Issue.12
, pp. 2065-2070
-
-
Beaber, J.W.1
Burrus, V.2
Hochhut, B.3
Waldor, M.K.4
-
6
-
-
34347364443
-
Integrons: Mobilizable platforms that promote genetic diversity in bacteria
-
Boucher Y, Labbate M, Koenig JE, Stokes HW. 2007. Integrons: mobilizable platforms that promote genetic diversity in bacteria. Trends Microbiol. 15 (7) 301-309.
-
(2007)
Trends Microbiol.
, vol.15
, Issue.7
, pp. 301-309
-
-
Boucher, Y.1
Labbate, M.2
Koenig, J.E.3
Stokes, H.W.4
-
7
-
-
24044433279
-
ACT: The Artemis comparison tool
-
Carver TJ, et al. 2005. ACT: the Artemis comparison tool. Bioinformatics 21 (16) 3422-3423.
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3422-3423
-
-
Carver, T.J.1
-
8
-
-
78649694766
-
Genetic basis of growth adaptation of Escherichia coli after deletion of pgi, a major metabolic gene
-
Charusanti P, et al. 2010. Genetic basis of growth adaptation of Escherichia coli after deletion of pgi, a major metabolic gene. PLoS Genet. 6(11):e1001186.
-
(2010)
PLoS Genet.
, vol.6
, Issue.11
-
-
Charusanti, P.1
-
9
-
-
78649868522
-
Ecosystem-specific selection pressures revealed through comparative population genomics
-
Coleman ML, Chisholm SW. 2010. Ecosystem-specific selection pressures revealed through comparative population genomics. Proc Natl Acad Sci USA. 107:18634-18639.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 18634-18639
-
-
Coleman, M.L.1
Chisholm, S.W.2
-
10
-
-
75349114758
-
Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations
-
Conrad T, et al. 2009. Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations. Genome Biol. 10(10):R118.
-
(2009)
Genome Biol.
, vol.10
, Issue.10
-
-
Conrad, T.1
-
11
-
-
79960104605
-
Microbial laboratory evolution in the era of genome-scale science
-
Conrad TM, Lewis NE, Palsson BO. 2011. Microbial laboratory evolution in the era of genome-scale science. Mol Syst Biol. 7:509.
-
(2011)
Mol Syst Biol.
, vol.7
, pp. 509
-
-
Conrad, T.M.1
Lewis, N.E.2
Palsson, B.O.3
-
12
-
-
84873046564
-
Comparative analysis of mobilizable genomic islands
-
Daccord A, Ceccarelli D, Rodrigue S, Burrus V. 2013. Comparative analysis of mobilizable genomic islands. J Bacteriol. 195(3):606-614.
-
(2013)
J Bacteriol.
, vol.195
, Issue.3
, pp. 606-614
-
-
Daccord, A.1
Ceccarelli, D.2
Rodrigue, S.3
Burrus, V.4
-
13
-
-
3543051830
-
Mauve: Multiple alignment of conserved genomic sequence with rearrangements
-
Darling A C E, Mau B, Blattner FR, Perna NT. 2004. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res. 14(7):1394-1403.
-
(2004)
Genome Res.
, vol.14
, Issue.7
, pp. 1394-1403
-
-
Darling, A.C.E.1
Mau, B.2
Blattner, F.R.3
Perna, N.T.4
-
14
-
-
34249027580
-
Inference of bacterial microevolution using multilocus sequence data
-
Didelot X, Falush D. 2007. Inference of bacterial microevolution using multilocus sequence data. Genetics 175(3):1251-1266.
-
(2007)
Genetics
, vol.175
, Issue.3
, pp. 1251-1266
-
-
Didelot, X.1
Falush, D.2
-
15
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar R. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5(1):113.
-
(2004)
BMC Bioinformatics
, vol.5
, Issue.1
, pp. 113
-
-
Edgar, R.1
-
16
-
-
84876571362
-
Polyclonality of concurrent natural populations of Alteromonas macleodii
-
Gonzaga A, et al. 2012. Polyclonality of concurrent natural populations of Alteromonas macleodii. Genome Biol Evol. 4(12):1360-1374.
-
(2012)
Genome Biol Evol.
, vol.4
, Issue.12
, pp. 1360-1374
-
-
Gonzaga, A.1
-
17
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser. 41:95-98.
-
(1999)
Nucleic Acids Symp Ser.
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
18
-
-
75649084906
-
Evolution of MRSA during hospital transmission and intercontinental spread
-
Harris SR, et al. 2010. Evolution of MRSA during hospital transmission and intercontinental spread. Science 327(5964):469-474.
-
(2010)
Science
, vol.327
, Issue.5964
, pp. 469-474
-
-
Harris, S.R.1
-
19
-
-
0026781517
-
Site-specific integration of the Haemophilus influenzae bacteriophage HP 1: Location of the boundaries of the phage attachment site
-
Hauser MA, Scocca JJ. 1992. Site-specific integration of the Haemophilus influenzae bacteriophage HP 1: location of the boundaries of the phage attachment site. J Bacteriol. 174(20):6674-6677.
-
(1992)
J Bacteriol.
, vol.174
, Issue.20
, pp. 6674-6677
-
-
Hauser, M.A.1
Scocca, J.J.2
-
20
-
-
84876343851
-
Genome sequencing identifies two nearly unchanged strains of persistent Listeria monocytogenes isolated in two different fish processing plants sampled six years apart
-
Holch A, et al. 2013. Genome sequencing identifies two nearly unchanged strains of persistent Listeria monocytogenes isolated in two different fish processing plants sampled six years apart. Appl Environ Microbiol. 79:2944-2951.
-
(2013)
Appl Environ Microbiol.
, vol.79
, pp. 2944-2951
-
-
Holch, A.1
-
21
-
-
51649088898
-
Biogeography of the ubiquitous marine bacterium Alteromonas macleodii determined by multilocus sequence analysis
-
Ivars-Martínez E, D'Auria G, et al. 2008. Biogeography of the ubiquitous marine bacterium Alteromonas macleodii determined by multilocus sequence analysis. Mol Ecol. 17(18):4092-4106.
-
(2008)
Mol Ecol.
, vol.17
, Issue.18
, pp. 4092-4106
-
-
Ivars-Martínez, E.1
D'Auria, G.2
-
22
-
-
57349122987
-
Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter
-
Ivars-Martínez E, Martin-Cuadrado AB, et al. 2008. Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter. ISME J. 2(12):1194-1212.
-
(2008)
ISME J.
, vol.2
, Issue.12
, pp. 1194-1212
-
-
Ivars-Martínez, E.1
Martin-Cuadrado, A.B.2
-
23
-
-
0034716946
-
Genomic sequences of bacteriophages HK97 and HK022: Pervasive genetic mosaicism in the lambdoid bacteriophages
-
Juhala RJ, et al. 2000. Genomic sequences of bacteriophages HK97 and HK022:pervasive genetic mosaicism in the lambdoid bacteriophages. J Mol Biol. 299(1):27-51.
-
(2000)
J Mol Biol.
, vol.299
, Issue.1
, pp. 27-51
-
-
Juhala, R.J.1
-
24
-
-
0028266653
-
Excision of a P4-like cryptic prophage leads to Alp protease expression in Escherichia coli
-
Kirby JE, Trempy JE, Gottesman S. 1994. Excision of a P4-like cryptic prophage leads to Alp protease expression in Escherichia coli. J Bacteriol. 176(7):2068-2081.
-
(1994)
J Bacteriol.
, vol.176
, Issue.7
, pp. 2068-2081
-
-
Kirby, J.E.1
Trempy, J.E.2
Gottesman, S.3
-
25
-
-
78449239214
-
Transition from positive to neutral in mutation fixation along with continuing rising fitness in thermal adaptive evolution
-
Kishimoto T, et al. 2010. Transition from positive to neutral in mutation fixation along with continuing rising fitness in thermal adaptive evolution. PLoS Genet. 6(10):e1001164.
-
(2010)
PLoS Genet.
, vol.6
, Issue.10
-
-
Kishimoto, T.1
-
26
-
-
14044262978
-
Genomic insights that advance the species definition for prokaryotes
-
Konstantinidis KT, Tiedje JM. 2005. Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci U S A. 102(7):2567-2572.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.7
, pp. 2567-2572
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
27
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz S, et al. 2004. Versatile and open software for comparing large genomes. Genome Biol. 5(2):R12.
-
(2004)
Genome Biol.
, vol.5
, Issue.2
-
-
Kurtz, S.1
-
28
-
-
0023035074
-
The structure of human thrombospondin, an adhesive glycoprotein with multiple calcium-binding sites and homologies with several different proteins
-
Lawler J, Hynes RO. 1986. The structure of human thrombospondin, an adhesive glycoprotein with multiple calcium-binding sites and homologies with several different proteins. J Cell Biol. 103(5):1635-1648.
-
(1986)
J Cell Biol.
, vol.103
, Issue.5
, pp. 1635-1648
-
-
Lawler, J.1
Hynes, R.O.2
-
29
-
-
33646757219
-
Flagellar glycosylation-a new component of the motility repertoire?
-
Logan SM. 2006. Flagellar glycosylation-a new component of the motility repertoire? Microbiology 152(5):1249-1262.
-
(2006)
Microbiology
, vol.152
, Issue.5
, pp. 1249-1262
-
-
Logan, S.M.1
-
30
-
-
17844377328
-
Genetic analysis of housekeeping genes reveals a deep-sea ecotype of Alteromonas macleodii in the Mediterranean Sea
-
López-López A, Bartual SG, Stal L, Onyshchenko O, Rodríguez-Valera F. 2005. Genetic analysis of housekeeping genes reveals a deep-sea ecotype of Alteromonas macleodii in the Mediterranean Sea. Environ Microbiol. 7(5):649-659.
-
(2005)
Environ Microbiol.
, vol.7
, Issue.5
, pp. 649-659
-
-
López-López, A.1
Bartual, S.G.2
Stal, L.3
Onyshchenko, O.4
Rodríguez-Valera, F.5
-
31
-
-
84867023857
-
Genomes of surface isolates of Alteromonas macleodii: The life of a widespread marine opportunistic copiotroph
-
López-Pérez M, et al. 2012. Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph. Sci Rep. 2:696.
-
(2012)
Sci Rep.
, vol.2
, pp. 696
-
-
López-Pérez, M.1
-
32
-
-
77957243284
-
RDP3: A flexible and fast computer program for analyzing recombination
-
Martin DP, et al. 2010. RDP3:a flexible and fast computer program for analyzing recombination. Bioinformatics 26(19):2462-2463.
-
(2010)
Bioinformatics
, vol.26
, Issue.19
, pp. 2462-2463
-
-
Martin, D.P.1
-
33
-
-
33747183094
-
Integrons: Agents of bacterial evolution
-
Mazel D. 2006. Integrons: agents of bacterial evolution. Nat Rev Microbiol. 4(8):608-620.
-
(2006)
Nat Rev Microbiol.
, vol.4
, Issue.8
, pp. 608-620
-
-
Mazel, D.1
-
34
-
-
78049286743
-
Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
-
McCarren J, et al. 2010. Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea. Proc Natl Acad Sci U S A. 107(38):16420-16427.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, Issue.38
, pp. 16420-16427
-
-
McCarren, J.1
-
35
-
-
77749295090
-
Mediterranean intermediate circulation estimated from Argo data in 2003-2010
-
Menna M, Poulain PM. 2010. Mediterranean intermediate circulation estimated from Argo data in 2003-2010. Ocean Sci. 6(1):331-343.
-
(2010)
Ocean Sci.
, vol.6
, Issue.1
, pp. 331-343
-
-
Menna, M.1
Poulain, P.M.2
-
36
-
-
0025133386
-
Molecular evolution of the Escherichia coli chromosome. III. Clonal frames
-
Milkman R, Bridges MM. 1990. Molecular evolution of the Escherichia coli chromosome. III. Clonal frames. Genetics 126(3):505-517.
-
(1990)
Genetics
, vol.126
, Issue.3
, pp. 505-517
-
-
Milkman, R.1
Bridges, M.M.2
-
37
-
-
77957331293
-
Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families
-
Morelli G, et al. 2010. Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families. PLoS Genet. 6(7):e1001036.
-
(2010)
PLoS Genet.
, vol.6
, Issue.7
-
-
Morelli, G.1
-
38
-
-
80053133499
-
Evidence for several waves of global transmission in the seventh cholera pandemic
-
Mutreja A, et al. 2011. Evidence for several waves of global transmission in the seventh cholera pandemic. Nature 477(7365):462-465.
-
(2011)
Nature
, vol.477
, Issue.7365
, pp. 462-465
-
-
Mutreja, A.1
-
39
-
-
0026805942
-
Rapid isolation of genomic DNA from Gram-negative bacteria
-
Neumann BR, Pospiech A, Schairer HU. 1992. Rapid isolation of genomic DNA from Gram-negative bacteria. Trends Genet. 8(10):332-333.
-
(1992)
Trends Genet.
, vol.8
, Issue.10
, pp. 332-333
-
-
Neumann, B.R.1
Pospiech, A.2
Schairer, H.U.3
-
40
-
-
77954065669
-
A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus
-
Nübel U, et al. 2010. A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus. PLoS Pathog. 6(4):e1000855.
-
(2010)
PLoS Pathog.
, vol.6
, Issue.4
-
-
Nübel, U.1
-
41
-
-
0033677613
-
Definition of the attI1 site of class 1 integrons
-
Partridge SR, et al. 2000. Definition of the attI1 site of class 1 integrons. Microbiology 146(11):2855-2864.
-
(2000)
Microbiology
, vol.146
, Issue.11
, pp. 2855-2864
-
-
Partridge, S.R.1
-
42
-
-
0037224962
-
Differential growth response of colonyforming a- and g-proteobacteria in dilution culture and nutrient addition experiments from Lake Kinneret (Israel), the Eastern Mediterranean Sea, and the Gulf of Eilat
-
Pinhassi J, Berman T. 2003. Differential growth response of colonyforming a- and g-proteobacteria in dilution culture and nutrient addition experiments from Lake Kinneret (Israel), the Eastern Mediterranean Sea, and the Gulf of Eilat. Appl Environ Microbiol. 69(1):199-211.
-
(2003)
Appl Environ Microbiol.
, vol.69
, Issue.1
, pp. 199-211
-
-
Pinhassi, J.1
Berman, T.2
-
43
-
-
78751579207
-
Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara
-
Quaiser A, Zivanovic Y, Moreira D, Lopez-Garcia P. 2011. Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara. ISME J. 5(2):285-304.
-
(2011)
ISME J.
, vol.5
, Issue.2
, pp. 285-304
-
-
Quaiser, A.1
Zivanovic, Y.2
Moreira, D.3
Lopez-Garcia, P.4
-
44
-
-
80055056483
-
Rates of mutation and host transmission for an Escherichia coli clone over 3 years
-
Reeves PR, et al. 2011. Rates of mutation and host transmission for an Escherichia coli clone over 3 years. PLoS One 6(10):e26907.
-
(2011)
PLoS One
, vol.6
, Issue.10
-
-
Reeves, P.R.1
-
45
-
-
38549158363
-
Think big-giant genes in bacteria
-
Reva O, Tümmler B. 2008. Think big-giant genes in bacteria. Environ Microbiol. 10(3):768-777.
-
(2008)
Environ Microbiol.
, vol.10
, Issue.3
, pp. 768-777
-
-
Reva, O.1
Tümmler, B.2
-
46
-
-
0034201441
-
EMBOSS: The European molecular biology open software suite
-
Rice P, Longden I, Bleasby A. 2000. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 16(6):276-277.
-
(2000)
Trends Genet.
, vol.16
, Issue.6
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
47
-
-
33644630612
-
Comparisons of dN/dS are time dependent for closely related bacterial genomes
-
Rocha E P C, et al. 2006. Comparisons of dN/dS are time dependent for closely related bacterial genomes. J Theor Biol. 239(2):226-235.
-
(2006)
J Theor Biol.
, vol.239
, Issue.2
, pp. 226-235
-
-
Rocha, E.P.C.1
-
48
-
-
84897584350
-
Is the pan-genome also a pan-selectome?
-
Rodriguez-Valera F, Ussery D. 2012. Is the pan-genome also a pan-selectome? F1000 Res. 1:16.
-
(2012)
F1000 Res.
, vol.1
, pp. 16
-
-
Rodriguez-Valera, F.1
Ussery, D.2
-
49
-
-
70350180460
-
Explaining microbial population genomics through phage predation
-
Rodriguez-Valera F, et al. 2009. Explaining microbial population genomics through phage predation. Nat Rev Microbiol. 7(11):828-836.
-
(2009)
Nat Rev Microbiol.
, vol.7
, Issue.11
, pp. 828-836
-
-
Rodriguez-Valera, F.1
-
50
-
-
33947238287
-
The Sorcerer II global ocean sampling expedition: Northwest Atlantic through eastern tropical Pacific
-
Rusch DB, et al. 2007. The Sorcerer II global ocean sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol. 5(3):e77.
-
(2007)
PLoS Biol.
, vol.5
, Issue.3
-
-
Rusch, D.B.1
-
51
-
-
0033635022
-
Artemis: Sequence visualization and annotation
-
Rutherford K, et al. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16(10):944-945.
-
(2000)
Bioinformatics
, vol.16
, Issue.10
, pp. 944-945
-
-
Rutherford, K.1
-
52
-
-
0035651017
-
Microbial communities in the chemocline of a hypersaline deep-sea basin (Urania Basin, Mediterranean Sea)
-
Sass AM, Sass H, Coolen M J L, Cypionka H, Overmann J. 2001. Microbial communities in the chemocline of a hypersaline deep-sea basin (Urania Basin, Mediterranean Sea). Appl Environ Microbiol. 67(12):5392-5402.
-
(2001)
Appl Environ Microbiol.
, vol.67
, Issue.12
, pp. 5392-5402
-
-
Sass, A.M.1
Sass, H.2
Coolen, M.J.L.3
Cypionka, H.4
Overmann, J.5
-
53
-
-
0034530892
-
Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: Changes in the genetic diversity of bacterial populations
-
Schäfer H, et al. 2006. Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: changes in the genetic diversity of bacterial populations. FEMS Microbiol Ecol. 34(3):243-253.
-
(2006)
FEMS Microbiol Ecol.
, vol.34
, Issue.3
, pp. 243-253
-
-
Schäfer, H.1
-
54
-
-
84859499489
-
Population genomics of early events in the ecological differentiation of bacteria
-
Shapiro BJ, et al. 2012. Population genomics of early events in the ecological differentiation of bacteria. Science 336(6077):48-51.
-
(2012)
Science
, vol.336
, Issue.6077
, pp. 48-51
-
-
Shapiro, B.J.1
-
55
-
-
84855281247
-
Transcriptional responses of surface water marine microbial assemblages to deep-sea water amendment
-
Shi Y, McCarren J, De Long EF. 2012. Transcriptional responses of surface water marine microbial assemblages to deep-sea water amendment. Environ Microbiol. 14(1):191-206.
-
(2012)
Environ Microbiol.
, vol.14
, Issue.1
, pp. 191-206
-
-
Shi, Y.1
McCarren, J.2
De Long, E.F.3
-
56
-
-
84871933403
-
Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep
-
Smedile F, et al. 2012. Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep. Environ Microbiol. 15(1):167-182.
-
(2012)
Environ Microbiol.
, vol.15
, Issue.1
, pp. 167-182
-
-
Smedile, F.1
-
57
-
-
18744372450
-
SNPsFinder, a web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes
-
Song J, Xu Y, White S, Miller K W P, Wolinsky M. 2005. SNPsFinder, a web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes. Bioinformatics 21(9):2083-2084.
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2083-2084
-
-
Song, J.1
Xu, Y.2
White, S.3
Miller, K.W.P.4
Wolinsky, M.5
-
58
-
-
10644222759
-
Long-term oceanographic and ecological research in the Western English Channel
-
Southward AJ, et al. 2004. Long-term oceanographic and ecological research in the Western English Channel. Adv Mar. Biol. 47:1-105.
-
(2004)
Adv Mar. Biol.
, vol.47
, pp. 1-105
-
-
Southward, A.J.1
-
59
-
-
14644438364
-
Circular genome visualization and exploration using CGView
-
Stothard P, Wishart DS. 2005. Circular genome visualization and exploration using CGView. Bioinformatics 21(4):537-539.
-
(2005)
Bioinformatics
, vol.21
, Issue.4
, pp. 537-539
-
-
Stothard, P.1
Wishart, D.S.2
-
60
-
-
33747847779
-
PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments
-
Suyama M, Torrents D, Bork P. 2006. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res. 34(2 Suppl), W609-W612.
-
(2006)
Nucleic Acids Res.
, vol.34
, Issue.2 SUPPL.
-
-
Suyama, M.1
Torrents, D.2
Bork, P.3
-
61
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22(22):4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
62
-
-
34548406920
-
High intraspecific recombination rate in a native population of Candidatus Pelagibacter ubique (SAR11)
-
Vergin KL, et al. 2007. High intraspecific recombination rate in a native population of Candidatus Pelagibacter ubique (SAR11). Environ Microbiol. 9(10):2430-2440.
-
(2007)
Environ Microbiol.
, vol.9
, Issue.10
, pp. 2430-2440
-
-
Vergin, K.L.1
-
63
-
-
70349451496
-
Control and benefits of CP4-57 prophage excision in Escherichia coli biofilms
-
Wang X, Kim Y, Wood TK. 2009. Control and benefits of CP4-57 prophage excision in Escherichia coli biofilms. ISME J. 3(10):1164-1179.
-
(2009)
ISME J.
, vol.3
, Issue.10
, pp. 1164-1179
-
-
Wang, X.1
Kim, Y.2
Wood, T.K.3
-
64
-
-
74249093709
-
Comparative ICE genomics: Insights into the evolution of the SXT/R391 family of ICEs
-
Wozniak R A F, et al. 2009. Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786.
-
(2009)
PLoS Genet.
, vol.5
, Issue.12
-
-
Wozniak, R.A.F.1
-
65
-
-
0031897964
-
Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
-
Yang Z. 1998. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol Biol Evol. 15(5):568-573.
-
(1998)
Mol Biol Evol.
, vol.15
, Issue.5
, pp. 568-573
-
-
Yang, Z.1
-
66
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18(5):821-829.
-
(2008)
Genome Res.
, vol.18
, Issue.5
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
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