SedNMR: On the edge between solution and solid-state NMR

Accounts of Chemical Research

Volumn 46, Issue 9, 2013, Pages 2059-2069

  Bertini, Ivano ^a   Luchinat, Claudio ^a   Parigi, Giacomo ^a   Ravera, Enrico ^a  

^a UNIVERSITY OF FLORENCE   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84884262060     PISSN: 00014842     EISSN: 15204898     Source Type: Journal    
DOI: 10.1021/ar300342f     Document Type: Article

References (52)

1. Andrew, E. R.; Bradbury, A.; Eades, R. G. Removal of Dipolar Broadening of Nuclear Magnetic Resonance Spectra of Solids by Specimen Rotation Nature 1959, 183, 1802-1803
2. Bertini, I.; Luchinat, C.; Parigi, G.; Ravera, E.; Reif, B.; Turano, P. Solid-State NMR of Proteins Sedimented by Ultracentrifugation Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 10396-10399
3. Huang, T. H.; Bachovchin, W. W.; Griffin, R. G.; Dobson, C. M. High-Resolution Nitrogen-15 Nuclear Magnetic Resonance Studies of α-Lytic Protease in Solid State. Direct Comparison of Enzyme Structure in Solution and Solid States Biochemistry 1984, 23, 5933-5937
4. Harbison, G. S.; Smith, S. O.; Pardoen, J. A.; Courtin, J. M. L.; Lugtenburg, J.; Herzfeld, J.; Mathies, R. A.; Griffin, R. G. Solid-State Carbon-13 NMR Detection of a Perturbed 6-s-Trans Chromophore in Bacteriorhodopsin Biochemistry 1985, 24, 6955-6962
5. Auger, M.; McDermott, A. E.; Robinson, V.; Castelhano, A. L.; Billedeau, R. J.; Pliura, D. H.; Krantz, A.; Griffin, R. G. Solid-State Carbon-13 NMR Study of a Transglutaminase-Inhibitor Adduct Biochemistry 1993, 32, 3930-3934
6. Hu, K.-N.; Yau, W.-M.; Tycko, R. Detection of a Transient Intermediate in a Rapid Protein Folding Process by Solid-State Nuclear Magnetic Resonance J. Am. Chem. Soc. 2010, 132, 24-25
7. Pauli, J.; van Rossum, B.; Forster, H.; de Groot, H. J.; Oschkinat, H. Sample Optimization and Identification of Signal Patterns of Amino Acid Side Chains in 2D RFDR Spectra of the Alpha-Spectrin SH3 Domain J. Magn. Reson. 2000, 143, 411-416
8. Siemer, A. B.; Huang, K.-Y.; McDermott, A. E. Protein Linewidth and Solvent Dynamics in Froze Solution NMR PLoS ONE 2012, 7 e47242
9. Thurber, K. R.; Tycko, R. Biomolecular Solid State NMR with Magic-Angle Spinning at 25K J. Magn. Reson. 2008, 195, 179-186
10. Keith, S. C., Jr. Factors Influencing the Survival of Bacteria at Temperatures in the Vicinity of the Freezing Point of Water Science 1913, 37, 877-879
11. Hall, D. A.; Maus, D. C.; Gerfen, G. J.; Inati, S. J.; Becerra, L. R.; Dahlquist, F. W.; Griffin, R. G.; Polarizarion-Enhanced, N. M. R. Spectroscopy of Biomolecules in Frozen Solution Science 1997, 276, 930-932
12. Rothgeb, T. M.; Oldfield, E. Nuclear Magnetic Resonance of Heme Protein Crystals. General Aspects J. Biol. Chem. 1981, 256, 1432-1446
13. Martin, R. W.; Zilm, K. W. Preparation of Protein Nanocrystals and Their Characterization by Solid State NMR J. Magn. Reson. 2003, 165, 162-174
14. Knight, M. J.; Webber, A. L.; Pell, A. J.; Guerry, P.; Barbet-Massin, E.; Bertini, I.; Felli, I. C.; Gonnelli, L.; Pierattelli, R.; Emsley, L.; Lesage, A.; Hermann, T.; Pintacuda, G. Fast Resonance Assignment and Fold Determination of Human Superoxide Dismutase by High-Resolution Proton-Detected Solid State MAS NMR Spectroscopy Angew. Chem., Int. Ed. 2011, 50, 11697-11701
15. 1H Detection and Ultrafast Magic-Angle-Spinning NMR Spectroscopy Angew. Chem. 2012, 124, 10914-10917
16. Zhou, D. H.; Nieuwkoop, A. J.; Berthold, D. A.; Comellas, G.; Sperling, L. J.; Tang, M.; Shah, G. J.; Brea, E. J.; Lemkau, L. R.; Rienstra, C. M. Solid-State NMR Analysis of Membrane Proteins and Protein Aggregates by Proton Detected Spectroscopy J. Biomol. NMR 2012, 54, 291-305
17. Margiolaki, I.; Wright, J. P.; Wilmanns, M.; Fitch, A. N.; Pinotsis, N. Second SH3 Domain of Ponsin Solved From Powder Diffraction J. Am. Chem. Soc. 2007, 129, 11865-11871
18. Stringer, J. A.; Bronnimann, C. E.; Mullen, C. G.; Zhou, D. H.; Stellfox, S. A.; Li, Y.; Williams, E. H.; Rienstra, C. M. Reduction of RF-Induced Sample Heating with a Scroll Coil Resonator Structure for Solid-State NMR Probes J. Magn. Reson. 2005, 173, 40-48
19. Loquet, A.; Sgourakis, N. G.; Gupta, R.; Giller, K.; Riedel, D.; Goosmann, C.; Griesinger, C.; Kolbe, M.; Baker, D.; Becker, S.; Lange, A. Atomic Model of the Type III Secretion System Needle Nature 2012, 486, 276-279
20. Bertini, I.; Gonnelli, L.; Luchinat, C.; Mao, J.; Nesi, A. A New Structural Model Aβ40 Fibrils J. Am. Chem. Soc. 2011, 133, 16013-16022
21. Fu, R.; Wang, X.; Li, C.; Santiago-Miranda, A. N.; Pielak, G. J.; Tian, F. In Situ Structural Characterization of a Recombinant Protein in Native Escherichia Coli Membranes with Solid-State Magic-Angle-Spinning NMR J. Am. Chem. Soc. 2011, 133, 12370-12373
22. Wang, Y.; Li, C.; Pielak, G. J. Effect of Proteins on Protein Diffusion J. Am. Chem. Soc. 2010, 132, 9392-9397
23. Lundh, S. Ultacentrifugation of Concentrated Biopolymer Solutions and Effect of Ascorbate Arch. Biochem. Biophys. 1985, 241, 265-274
24. Lundh, S. Concentrated Protein Solutions in the Analytical Ultracentrifuge J. Polym. Sci.: Polym. Phys. Ed. 1980, 18, 1963-1978
25. Benton, L. A.; Smith, A. E.; Young, G. B.; Pielak, G. J. Unexpected Effects of Macromolecular Crowding on Protein Stability Biochemistry 2012, 51, 9773-9775
26. Wang, Y.; Sarkar, M.; Smith, A. E.; Krois, A. S.; Pielak, G. J. Macromolecular Crowding and Protein Stability J. Am. Chem. Soc. 2012, 134, 16614-16618
27. Deguchi, S.; Shimoshige, H.; Tsudome, M.; Mukai, S.; Corkery, R. W.; Ito, S.; Horikoshi, K. Microbial Growth at Hyperaccelerations Up to 403,627 x g Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 7997-8002
28. Renault, M.; Tommassen-van Boxtel, R.; Bos, M. P.; Post, J. A.; Tommassen, J.; Baldus, M. Cellular Solid-State Nuclear Magnetic Resonance Spectroscopy Proc. Natl. Acad. Sci. U.S.A 2012, 109, 4863-8
29. Zandomeneghi, G.; Ilg, K.; Aebi, M.; Meier, B. H. On-Cell MAS NMR: Physiological Clues From Living Cells J. Am. Chem. Soc. 2012, 134, 17513-17519
30. de la Torre, J. G.; Huertas, M. L.; Carrasco, B. Calculation of Hydrodynamic Properties of Globular Proteins from Their Atomic-Level Structure Biophys. J. 2000, 78, 719-730
31. Van Holde, K. E.; Baldwin, R. L. Rapid Attainment of Sedimentation Equilibrium J. Phys. Chem. 1958, 62, 734-743
32. Bertini, I.; Engelke, F.; Luchinat, C.; Parigi, G.; Ravera, E.; Rosa, C.; Turano, P. NMR Properties of Sedimented Solutes Phys. Chem. Chem. Phys. 2012, 14, 439-447
33. Farnum, M.; Zukoski, C. Effect of Glycerol on the Interactions and Solubility of Bovine Pancreatic Trypsin Inhibitor Biophys. J. 1999, 76, 2716-2726
34. Bernadó, P.; de la Torre, J. G.; Pons, M. Macromolecular Crowding in Biological Systems: Hydrodynamics and NMR Methods J. Mol. Recognit. 2004, 17, 397-407
35. Mainz, A.; Bardiaux, B.; Kuppler, F.; Multhaup, G.; Felli, I. C.; Pierattelli, R.; Reif, B. Structural and Mechanistic Implications of Metal-Binding in the Small Heat-Shock Protein AB-Crystallin J. Biol. Chem. 2012, 287, 1128-1138
36. Morris, G. A.; Freeman, R. Enhancement of Nuclear Magnetic Resonance Signals by Polarization Transfer J. Am. Chem. Soc. 1979, 101, 760-762
37. Pines, A.; Gibby, M. G.; Waugh, J. S. Proton-Enhanced Nuclear Induction Spectroscopy. A Method for High Resolution NMR of Dilute Spins in Solids J. Chem. Phys. 1972, 56, 1776-1777
38. Baldwin, A. J.; Walsh, P.; Hansen, D. F.; Hilton, G. R.; Benesch, J. L. P.; Sharpe, S.; Kay, L. E. Probing Dynamic Conformations of the High-Molecular-Weight AB-Crystallin Heat Shock Protein Ensemble by NMR Spectroscopy J. Am. Chem. Soc. 2012, 134, 15343-15350
39. Polenova, T. Protein NMR Spectroscopy: Spinning into Focus Nat. Chem. 2011, 3, 759-760
40. Bertini, I.; Galas, O.; Luchinat, C.; Parigi, G. A Computer Program for the Calculation of Paramagnetic Enhancements of Nuclear Relaxation Rates in Slowly Rotating Systems J. Magn. Reson., Ser. A 1995, 113, 151-158
41. Böckmann, A.; Gardiennet, C.; Verel, R.; Hunkeler, A.; Loquet, A.; Pintacuda, G.; Emsley, L.; Meier, B. H.; Lesage, A. Characterization of Different Water Pools in Solid-State NMR Protein Samples J. Biomol. NMR 2009, 45, 319-327
42. Bertini, I.; Engelke, F.; Gonnelli, L.; Knott, B.; Luchinat, C.; Osen, D.; Ravera, E. On the Use of Ultracentrifugal Devices for Sedimented Solute NMR J. Biomol. NMR 2012, 54, 123-127
43. Gardiennet, C.; Schütz, A. K.; Hunkeler, A.; Kunert, B.; Terradot, L.; Böckmann, A.; Meier, B. H. A Sedimented Sample of a 59 KDa Dodecameric Helicase Yields High-Resolution Solid-State NMR Spectra Angew. Chem., Int. Ed 2012, 51, 7855-7858
44. Andersson, K. M.; Hovmoller, S. The Protein Content in Crystals and Packing Coefficients in Different Space Groups Acta Crystallogr., Sect. D: Biol. Crystallogr. 2000, 56, 789-790
45. 13C Solids NMR Biopolymers 1990, 29, 1801-1806
46. 13C-Nmr Spectroscopy Biopolymers 1993, 33, 1871-1876
47. Seidel, K.; Etzkorn, M.; Heise, H.; Becker, S.; Baldus, M. High-Resolution Solid-State NMR Studies on Uniformly [13C,15N]-Labeled Ubiquitin ChemBioChem 2005, 6, 1638-1647
48. Mainz, A.; Jehle, S.; van Rossum, B. J.; Oschkinat, H.; Reif, B. Large Protein Complexes With Extreme Rotational Correlation Times Investigated in Solution by Magic-Angle-Spinning NMR Spectroscopy J. Am. Chem. Soc. 2009, 131, 15968-15969
49. Chatelier, R. C.; Minton, A. P. Sedimentation Equilibrium in Macromolecular Solutions of Arbitrary Concentration. I. Self-Associating Proteins Biopolymers 1987, 26, 507-524
50. Chatelier, R. C.; Minton, A. P. Sedimentation Equilibrium in Macromolecular Solutions of Arbitrary Concentration. II. Two Protein Components Biopolymers 1987, 26, 1097-1113
51. Hu, K. N.; Yu, H. H.; Swager, T. M.; Griffin, R. G. Dynamic Nuclear Polarization With Biradicals J. Am. Chem. Soc. 2004, 126, 10844-10845
52. Ravera, E.; Corzilius, B.; Michaelis, V. K.; Rosa, C.; Griffin, R. G.; Luchinat, C.; Bertini, I. Dynamic Nuclear Polarization of Sedimented Solutes J. Am. Chem. Soc. 2013, 135, 1641-1644