Microbiome and skin diseases

Current Opinion in Allergy and Clinical Immunology

Volumn 13, Issue 5, 2013, Pages 514-520

  Zeeuwen, Patrick L J M ^a   Kleerebezem, Michiel ^b   Timmerman, Harro M ^c   Schalkwijk, Joost ^a  

^a RADBOUD UNIVERSITY MEDICAL CENTER   (Netherlands)

^b WAGENINGEN UNIVERSITY   (Netherlands)

^c NIZO FOOD RESEARCH   (Netherlands)

Author keywords

Atopic dermatitis; Host microbe interactions; Microbiome; Psoriasis; Skin barrier

Indexed keywords

ATOPIC DERMATITIS; CORYNEBACTERIUM; DERMATITIS; HIGH THROUGHPUT SEQUENCING; HUMAN; IMMUNE RESPONSE; IMMUNE SYSTEM; MICROBIAL COLONIZATION; MICROBIOME; NONHUMAN; PRIORITY JOURNAL; PROPIONIBACTERIUM; REVIEW; SKIN ALLERGY; SKIN DISEASE; SKIN FLORA; STAPHYLOCOCCUS EPIDERMIDIS; STRATUM CORNEUM; STREPTOCOCCUS;

ANIMALS; GENETIC PREDISPOSITION TO DISEASE; GENETIC VARIATION; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HOMEOSTASIS; HOST-PATHOGEN INTERACTIONS; HUMANS; HYPERSENSITIVITY; IMMUNOMODULATION; MICROBIOTA; SKIN; SKIN DISEASES;

EID: 84883599528     PISSN: 15284050     EISSN: 14736322     Source Type: Journal    
DOI: 10.1097/ACI.0b013e328364ebeb     Document Type: Review

References (50)

1. Dominguez-Bello MG, Costello EK, Contreras M, et al. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci U S A 2010; 107:11971-11975.
2. Capone KA, Dowd SE, Stamatas GN, Nikolovski J. Diversity of the human skin microbiome early in life. J Invest Dermatol 2011; 131:2026-2032.
3. Grice EA, Kong HH, Renaud G, et al. A diversity profile of the human skin microbiota. Genome Res 2008; 18:1043-1050.
4. Cho I, Blaser MJ. The human microbiome: At the interface of health and disease. Nat Rev Genet 2012; 13:260-270.
5. Ursell LK, Clemente JC, Rideout JR, et al. The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites. J Allergy Clin Immunol 2012; 129:1204-1208.
6. Rosenthal M, Goldberg D, Aiello A, et al. Skin microbiota: Microbial community structure and its potential association with health and disease. Infect Genet Evol 2011; 11:839-848.
7. Kuczynski J, Lauber CL, Walters WA, et al. Experimental and analytical tools for studying the human microbiome. Nat Rev Genet 2012; 13:47-58.
8. Consortium THMP. Structure, function and diversity of the healthy human microbiome. Nature 2012; 486:207-214.
9. Qin J, Li R, Raes J, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010; 464:59-65.
10. Hanski I, von Hertzen L, Fyhrquist N, et al. Environmental biodiversity, human microbiota, and allergy are interrelated. Proc Natl Acad Sci U S A 2012; 109:8334-8339.
11. Chiller K, Selkin BA, Murakawa GJ. Skin microflora and bacterial infections of the skin. J Investig Dermatol Symp Proc 2001; 6:170-174.
12. Fierer N, Lauber CL, Zhou N, et al. Forensic identification using skin bacterial communities. Proc Natl Acad Sci U S A 2010; 107:6477-6481.
13. Iwase T, Uehara Y, Shinji H, et al. Staphylococcus epidermidis Esp inhibits Staphylococcus aureus biofilm formation and nasal colonization. Nature 2010; 465:346-349.
14. Shu M, Wang Y, Yu J, et al. Fermentation of Propionibacterium acnes, a commensal bacterium in the human skin microbiome, as skin probiotics against methicillin-resistant Staphylococcus aureus. PLoS One 2013; 8:e55380.
15. Lai Y, Di NA, Nakatsuji T, et al. Commensal bacteria regulate Toll-like receptor 3-dependent inflammation after skin injury. Nat Med 2009; 15:1377-1382.
16. Wanke I, Steffen H, Christ C, et al. Skin commensals amplify the innate immune response to pathogens by activation of distinct signaling pathways. J Invest Dermatol 2011; 131:382-390.
17. Li D, Lei H, Li Z, et al. A novel lipopeptide from skin commensal activates TLR2/CD36-p38 MAPK signaling to increase antibacterial defense against bacterial infection. PLoS One 2013; 8:e58288.
18. Naik S, Bouladoux N, Wilhelm C, et al. Compartmentalized control of skin immunity by resident commensals. Science 2012; 337:1115-1119.
19. Blaser M. Antibiotic overuse: Stop the killing of beneficial bacteria. Nature 2011; 476:393-394.
20. Grice EA, Segre JA. The skin microbiome. Nat Rev Microbiol 2011; 9:244-253.
21. Costello EK, Lauber CL, Hamady M, et al. Bacterial community variation in human body habitats across space and time. Science 2009; 326:1694-1697.
22. Grice EA, Kong HH, Conlan S, et al. Topographical and temporal diversity of the human skin microbiome. Science 2009; 324:1190-1192.
23. Zeeuwen PL, Boekhorst J, van den Bogaard EH, et al. Microbiome dynamics of human epidermis following skin barrier disruption. Genome Biol 2012; 13:R101.
24. Nakatsuji T, Chiang HI, Jiang SB, et al. The microbiome extends to subepidermal compartments of normal skin. Nat Commun 2013; 4:1431.
25. Strachan DP. Hay fever, hygiene, and household size. BMJ 1989; 299:1259-1260.
26. Ehlers S, Kaufmann SH. Infection, inflammation, and chronic diseases: Consequences of a modern lifestyle. Trends Immunol 2010; 31:184-190.
27. von Hertzen L, Hanski I, Haahtela T. Natural immunity. Biodiversity loss and inflammatory diseases are two global megatrends that might be related. EMBO Rep 2011; 12:1089-1093.
28. Kuo IH, Yoshida T, De Benedetto A, Beck LA. The cutaneous innate immune response in patients with atopic dermatitis. J Allergy Clin Immunol 2013; 131:266-278.
29. McAleer MA, Irvine AD. The multifunctional role of filaggrin in allergic skin disease. J Allergy Clin Immunol 2013; 131:280-291.
30. Palmer CN, Irvine AD, Terron-Kwiatkowski A, et al. Common loss-of-function variants of the epidermal barrier protein filaggrin are a major predisposing factor for atopic dermatitis. Nat Genet 2006; 38:441-446.
31. Hollox EJ, Huffmeier U, Zeeuwen PL, et al. Psoriasis is associated with increased beta-defensin genomic copy number. Nat Genet 2008; 40:23-25.
32. de Cid R, Riveira-Munoz E, Zeeuwen PL, et al. Deletion of the late cornified envelope LCE3B and LCE3C genes as a susceptibility factor for psoriasis. Nat Genet 2009; 41:211-215.
33. Boguniewicz M, Leung DY. Atopic dermatitis: A disease of altered skin barrier and immune dysregulation. Immunol Rev 2011; 242:233-246.
34. Huang JT, Abrams M, Tlougan B, et al. Treatment of Staphylococcus aureus colonization in atopic dermatitis decreases disease severity. Pediatrics 2009; 123:e808-e814.
35. Kong HH, Oh J, Deming C, et al. Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis. Genome Res 2012; 22:850-859.
36. Fry L, Baker BS. Triggering psoriasis: The role of infections and medications. Clin Dermatol 2007; 25:606-615.
37. Gao Z, Tseng CH, Strober BE, et al. Substantial alterations of the cutaneous bacterial biota in psoriatic lesions. PLoS One 2008; 3:e2719.
38. Fahlen A, Engstrand L, Baker BS, et al. Comparison of bacterial microbiota in skin biopsies from normal and psoriatic skin. Arch Dermatol Res 2012; 304:15-22.
39. Zeeuwen PL, de Jongh GJ, Rodijk-Olthuis D, et al. Genetically programmed differences in epidermal host defense between psoriasis and atopic dermatitis patients. PLoS One 2008; 3:e2301.
40. Brauweiler AM, Bin L, Kim BE, et al. Filaggrin-dependent secretion of sphingomyelinase protects against staphylococcal alpha-toxin-induced keratinocyte death. J Allergy Clin Immunol 2013; 131:e421-e422.
41. Park HK, Ha MH, Park SG, et al. Characterization of the fungal microbiota (mycobiome) in healthy and dandruff-afflicted human scalps. PLoS One 2012; 7:e32847.
42. Paulino LC, Tseng CH, Strober BE, Blaser MJ. Molecular analysis of fungal microbiota in samples from healthy human skin and psoriatic lesions. J Clin Microbiol 2006; 44:2933-2941.
43. Foulongne V, Sauvage V, Hebert C, et al. Human skin microbiota: High diversity of DNA viruses identified on the human skin by high throughput sequencing. PLoS One 2012; 7:e38499.
44. McDowell A, Barnard E, Nagy I, et al. An expanded multilocus sequence typing scheme for Propionibacterium acnes: Investigation of 'pathogenic', 'commensal' and antibiotic resistant strains. PLoS One 2012; 7:e41480.
45. Lomholt HB, Kilian M. Population genetic analysis of Propionibacterium acnes identifies a subpopulation and epidemic clones associated with acne. PLoS One 2010; 5:e12277.
46. Fitz-Gibbon S, Tomida S, Chiu BH, et al. Propionibacterium acnes strain populations in the human skin microbiome associated with acne. J Invest Dermatol 2013; doi: 10.1038/jid.2013.21. [Epub ahead of print]
47. Alexeyev OA, Lundskog B, Ganceviciene R, et al. Pattern of tissue invasion by Propionibacterium acnes in acne vulgaris. J Dermatol Sci 2012; 67: 63-66.
48. Jahns AC, Lundskog B, Ganceviciene R, et al. An increased incidence of Propionibacterium acnes biofilms in acne vulgaris: A case-control study. Br J Dermatol 2012; 167:50-58.
49. Kurt K, Rasigade JP, Laurent F, et al. Subpopulations of Staphylococcus aureus clonal complex 121 are associated with distinct clinical entities. PLoS One 2013; 8:e58155.
50. Fredrich E, Barzantny H, Brune I, Tauch A. Daily battle against body odor: Towards the activity of the axillary microbiota. Trends Microbiol 2013; 21:305-312.