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Volumn 15, Issue 9, 2013, Pages 2573-2587

Community dynamics of cellulose-adapted thermophilic bacterial consortia

Author keywords

[No Author keywords available]

Indexed keywords

ARABINOXYLAN; BIOFUEL; CELLULOSE; GLYCOSIDASE; RNA 16S; XYLAN;

EID: 84883552926     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/1462-2920.12159     Document Type: Article
Times cited : (84)

References (45)
  • 1
    • 77749274574 scopus 로고    scopus 로고
    • Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community
    • Allgaier, M., Reddy, A., Park, J.I., Ivanova, N., D'haeseleer, P., Lowry, S., etal. (2010) Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community. PLoS ONE 5: e8812.
    • (2010) PLoS ONE , vol.5
    • Allgaier, M.1    Reddy, A.2    Park, J.I.3    Ivanova, N.4    D'haeseleer, P.5    Lowry, S.6
  • 2
    • 34548189524 scopus 로고    scopus 로고
    • Segetibacter koreensis gen. nov., sp. nov., a novel member of the phylum Bacteroidetes, isolated from the soil of a ginseng field in South Korea
    • An, D.S., Lee, H.G., Im, W.T., Liu, Q.M., and Lee, S.T. (2007) Segetibacter koreensis gen. nov., sp. nov., a novel member of the phylum Bacteroidetes, isolated from the soil of a ginseng field in South Korea. Int J Syst Evol Microbiol 57: 1828-1833.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 1828-1833
    • An, D.S.1    Lee, H.G.2    Im, W.T.3    Liu, Q.M.4    Lee, S.T.5
  • 4
    • 23744460935 scopus 로고    scopus 로고
    • Living in a fungal world: impact of fungi on soil bacterial niche development
    • de Boer, W., Folman, L.B., Summerbell, R.C., and Boddy, L. (2005) Living in a fungal world: impact of fungi on soil bacterial niche development. FEMS Microbiol Rev 29: 795-811.
    • (2005) FEMS Microbiol Rev , vol.29 , pp. 795-811
    • de Boer, W.1    Folman, L.B.2    Summerbell, R.C.3    Boddy, L.4
  • 5
    • 79953898776 scopus 로고    scopus 로고
    • Transition of cellulose crystalline structure and surface morphology of biomass as a function of ionic liquid pretreatment and its relation to enzymatic hydrolysis
    • Cheng, G., Varanasi, P., Li, C., Liu, H., Melnichenko, Y.B., Simmons, B.A., etal. (2011) Transition of cellulose crystalline structure and surface morphology of biomass as a function of ionic liquid pretreatment and its relation to enzymatic hydrolysis. Biomacromolecules 12: 933-941.
    • (2011) Biomacromolecules , vol.12 , pp. 933-941
    • Cheng, G.1    Varanasi, P.2    Li, C.3    Liu, H.4    Melnichenko, Y.B.5    Simmons, B.A.6
  • 6
    • 0035205390 scopus 로고    scopus 로고
    • Biochemical analysis of interactions between outer membrane proteins that contribute to starch utilization by Bacteroides thetaiotaomicron
    • Cho, K.H., and Salyers, A.A. (2001) Biochemical analysis of interactions between outer membrane proteins that contribute to starch utilization by Bacteroides thetaiotaomicron. J Bacteriol 183: 7224-7230.
    • (2001) J Bacteriol , vol.183 , pp. 7224-7230
    • Cho, K.H.1    Salyers, A.A.2
  • 7
    • 34247606048 scopus 로고    scopus 로고
    • Isolation and characterization of newly isolated soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria
    • Eichorst, S.A., Breznak, J.A., and Schmidt, T.M. (2007) Isolation and characterization of newly isolated soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. Appl Environ Microbiol 73: 2708-2717.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 2708-2717
    • Eichorst, S.A.1    Breznak, J.A.2    Schmidt, T.M.3
  • 8
    • 79551492681 scopus 로고    scopus 로고
    • Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria
    • Eichorst, S.A., Kuske, C.R., and Schmidt, T.M. (2011) Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria. Appl Environ Microbiol 77: 586-596.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 586-596
    • Eichorst, S.A.1    Kuske, C.R.2    Schmidt, T.M.3
  • 9
    • 38349049462 scopus 로고    scopus 로고
    • Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
    • Flint, H.J., Bayer, E.A., Rincon, M.T., Lamed, R., and White, R.A. (2008) Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis. Nat Rev Microbiol 6: 121-131.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 121-131
    • Flint, H.J.1    Bayer, E.A.2    Rincon, M.T.3    Lamed, R.4    White, R.A.5
  • 11
    • 84858442087 scopus 로고    scopus 로고
    • Substrate perturbation alters the glycoside hydrolase activities and community composition of switchgrass-adapted bacterial consortia
    • Gladden, J.M., Eichorst, S.A., Hazen, T.C., Simmons, B.A., and Singer, S.W. (2012) Substrate perturbation alters the glycoside hydrolase activities and community composition of switchgrass-adapted bacterial consortia. Biotechnol Bioeng 109: 1140-1145.
    • (2012) Biotechnol Bioeng , vol.109 , pp. 1140-1145
    • Gladden, J.M.1    Eichorst, S.A.2    Hazen, T.C.3    Simmons, B.A.4    Singer, S.W.5
  • 13
    • 79251587455 scopus 로고    scopus 로고
    • Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
    • Hess, M., Sczyrba, A., Egan, R., Kim, T.W., Chokhawala, H., Schroth, G., etal. (2011) Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 331: 463-467.
    • (2011) Science , vol.331 , pp. 463-467
    • Hess, M.1    Sczyrba, A.2    Egan, R.3    Kim, T.W.4    Chokhawala, H.5    Schroth, G.6
  • 14
    • 79959469853 scopus 로고    scopus 로고
    • PyroTagger: a fast, accurate pipeline for analysis of rRNA amplicon pyrosequence data
    • The Open Journal [WWW document]. URL
    • Kunin, V., and Hugenholtz, P. (2010) PyroTagger: a fast, accurate pipeline for analysis of rRNA amplicon pyrosequence data. The Open Journal [WWW document]. URL http://www.theopenjournal.org/toj_articles/1
    • (2010)
    • Kunin, V.1    Hugenholtz, P.2
  • 15
    • 0001857117 scopus 로고
    • Chapter 6 16S/23S rRNA sequencing
    • Goodfellow, E.S.M. (ed.). New York: John Wiley & Sons Ltd.
    • Lane, D.J. (1991) Chapter 6 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics. Goodfellow, E.S.M. (ed.). New York: John Wiley & Sons Ltd., pp. 115-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 16
    • 0028822931 scopus 로고
    • Cellulose degradation in anaerobic environments
    • Leschine, S.B. (1995) Cellulose degradation in anaerobic environments. Ann Rev Microbiol 49: 399-426.
    • (1995) Ann Rev Microbiol , vol.49 , pp. 399-426
    • Leschine, S.B.1
  • 18
    • 77952998412 scopus 로고    scopus 로고
    • Toward plant cell wall degradation under thermophilic condition: a unique microbial community developed originally from swine waste
    • Liang, Y., Yesuf, J., and Feng, Z. (2010) Toward plant cell wall degradation under thermophilic condition: a unique microbial community developed originally from swine waste. Appl Biochem Biotech 161: 147-156.
    • (2010) Appl Biochem Biotech , vol.161 , pp. 147-156
    • Liang, Y.1    Yesuf, J.2    Feng, Z.3
  • 19
    • 70350719170 scopus 로고    scopus 로고
    • Ferruginibacter alkalilentus gen. nov., sp. nov. and Ferruginibacter lapsinanis sp. nov., novel members of the family 'Chitinophagaceae' in the phylum Bacteroidetes, isolated from freshwater sediment
    • Lim, J.H., Baek, S.H., and Lee, S.T. (2009) Ferruginibacter alkalilentus gen. nov., sp. nov. and Ferruginibacter lapsinanis sp. nov., novel members of the family 'Chitinophagaceae' in the phylum Bacteroidetes, isolated from freshwater sediment. Int J Syst Evol Microbiol 59: 2394-2399.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 2394-2399
    • Lim, J.H.1    Baek, S.H.2    Lee, S.T.3
  • 21
    • 0031908144 scopus 로고    scopus 로고
    • Fermentation of maize bran, oat bran, and wheat bran by Bacteroides ovatus V975
    • Martin, S.A., Morrison, W.H., and Akin, D.E. (1998) Fermentation of maize bran, oat bran, and wheat bran by Bacteroides ovatus V975. Curr Microbiol 36: 90-95.
    • (1998) Curr Microbiol , vol.36 , pp. 90-95
    • Martin, S.A.1    Morrison, W.H.2    Akin, D.E.3
  • 23
    • 84861401384 scopus 로고    scopus 로고
    • A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels
    • Park, J.I., Steen, E.J., Burd, H., Evans, S.S., Redding-Johnson, A.M., Batth, T., etal. (2012) A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels. PLoS ONE 7: e37010.
    • (2012) PLoS ONE , vol.7
    • Park, J.I.1    Steen, E.J.2    Burd, H.3    Evans, S.S.4    Redding-Johnson, A.M.5    Batth, T.6
  • 24
    • 33646083242 scopus 로고    scopus 로고
    • Paenibacillus curdlanolyticus strain B-6 xylanolytic-cellulolytic enzyme system that degrades insoluble polysaccharides
    • Pason, P., Kyu, K.L., and Ratanakhanokchai, K. (2006) Paenibacillus curdlanolyticus strain B-6 xylanolytic-cellulolytic enzyme system that degrades insoluble polysaccharides. Appl Environ Microbiol 72: 2483-2490.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 2483-2490
    • Pason, P.1    Kyu, K.L.2    Ratanakhanokchai, K.3
  • 25
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse, E., Quast, C., Knittel, K., Fuchs, B.M., Ludwig, W., Peplies, J., and Glöckner, F.O. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucl Acids Res 35: 7188-7196.
    • (2007) Nucl Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6    Glöckner, F.O.7
  • 26
    • 67649815348 scopus 로고    scopus 로고
    • Lacibacter cauensis gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from sediment of a eutrophic lake
    • Qu, J.H., Yuan, H.L., Yang, J.S., Li, H.F., and Chen, N. (2009) Lacibacter cauensis gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from sediment of a eutrophic lake. Int J Syst Evol Microbiol 59: 1153-1157.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 1153-1157
    • Qu, J.H.1    Yuan, H.L.2    Yang, J.S.3    Li, H.F.4    Chen, N.5
  • 28
    • 79952136797 scopus 로고    scopus 로고
    • Culture-independent phylogenetic analysis of the microbial community in industrial sugarcane bagasse feedstock piles
    • Rattanachomsri, U., Kanokratana, P., Eurvilaichitr, L., Igarashi, Y., and Champreda, V. (2011) Culture-independent phylogenetic analysis of the microbial community in industrial sugarcane bagasse feedstock piles. Biosci Biotechnol Biochem 75: 232-239.
    • (2011) Biosci Biotechnol Biochem , vol.75 , pp. 232-239
    • Rattanachomsri, U.1    Kanokratana, P.2    Eurvilaichitr, L.3    Igarashi, Y.4    Champreda, V.5
  • 29
    • 34547421701 scopus 로고    scopus 로고
    • Bacteroides cellulosilyticus sp. nov., a cellulolytic bacterium from the human gut microbial community
    • Robert, C., Chassard, C., Lawson, P.A., and Bernalier-Donadille, A. (2007) Bacteroides cellulosilyticus sp. nov., a cellulolytic bacterium from the human gut microbial community. Int J Syst Evol Microbiol 57: 1516-1520.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 1516-1520
    • Robert, C.1    Chassard, C.2    Lawson, P.A.3    Bernalier-Donadille, A.4
  • 30
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open-Source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss, P.D., Westcott, S.L., Ryabin, T., Hall, J.R., Hartmann, M., Hollister, E.B., etal. (2009) Introducing mothur: open-Source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5    Hollister, E.B.6
  • 31
    • 84920169409 scopus 로고    scopus 로고
    • Berlin, Germany: Springer-Verlag.
    • Schmidt, O. (2006) Wood and Tree Fungi. Berlin, Germany: Springer-Verlag.
    • (2006) Wood and Tree Fungi
    • Schmidt, O.1
  • 33
    • 67649782384 scopus 로고    scopus 로고
    • Filimonas lacunae gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from fresh water
    • Shiratori, H., Tagami, Y., Morishita, T., Kamihara, Y., Beppu, T., and Ueda, K. (2009) Filimonas lacunae gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from fresh water. Int J Syst Evol Microbiol 59: 1137-1142.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 1137-1142
    • Shiratori, H.1    Tagami, Y.2    Morishita, T.3    Kamihara, Y.4    Beppu, T.5    Ueda, K.6
  • 34
    • 0028862805 scopus 로고
    • Microbial cellulases: protein architecture, molecular properties, and biosynthesis
    • Singh, A., and Hayashi, K. (1995) Microbial cellulases: protein architecture, molecular properties, and biosynthesis. Adv Appl Microbiol 40: 1-44.
    • (1995) Adv Appl Microbiol , vol.40 , pp. 1-44
    • Singh, A.1    Hayashi, K.2
  • 35
    • 0000612080 scopus 로고
    • Phenotypic characterization
    • Gerhardt, P., Murray, R.G.E., Wood, W.A., and Krieg, N.R. (eds). Washington, DC, USA: American Society for Microbiology
    • Smibert, R.M., and Krieg, N.R. (1994) Phenotypic characterization. In Methods for General and Molecular Bacteriology. Gerhardt, P., Murray, R.G.E., Wood, W.A., and Krieg, N.R. (eds). Washington, DC, USA: American Society for Microbiology, pp. 607-654.
    • (1994) Methods for General and Molecular Bacteriology , pp. 607-654
    • Smibert, R.M.1    Krieg, N.R.2
  • 36
  • 38
    • 65549138472 scopus 로고    scopus 로고
    • Isolation and characterization of a multienzyme complex (cellulosome) of the Paenibacillus curdlanolyticus B-6 grown on Avicel under aerobic conditions
    • Waeonukul, R., Kyu, K.L., Sakka, K., and Ratanakhanokchai, K. (2009) Isolation and characterization of a multienzyme complex (cellulosome) of the Paenibacillus curdlanolyticus B-6 grown on Avicel under aerobic conditions. J Biosci Bioeng 107: 610-614.
    • (2009) J Biosci Bioeng , vol.107 , pp. 610-614
    • Waeonukul, R.1    Kyu, K.L.2    Sakka, K.3    Ratanakhanokchai, K.4
  • 39
    • 80052357379 scopus 로고    scopus 로고
    • Characterization of a microbial consortium capable of degrading lignocellulose
    • Wang, W., Yan, L., Cui, Z., Gao, Y., Wang, Y., and Jing, R. (2011) Characterization of a microbial consortium capable of degrading lignocellulose. Bioresour Technol 102: 9321-9324.
    • (2011) Bioresour Technol , vol.102 , pp. 9321-9324
    • Wang, W.1    Yan, L.2    Cui, Z.3    Gao, Y.4    Wang, Y.5    Jing, R.6
  • 40
    • 34547421702 scopus 로고    scopus 로고
    • Thermobacillus composti sp nov., a moderately thermophilic bacterium isolated from a composting reactor
    • Watanabe, K., Nagao, N., Yamamoto, S., Toda, T., and Kurosawa, N. (2007) Thermobacillus composti sp nov., a moderately thermophilic bacterium isolated from a composting reactor. Int J Syst Evol Microbiol 57: 1473-1477.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 1473-1477
    • Watanabe, K.1    Nagao, N.2    Yamamoto, S.3    Toda, T.4    Kurosawa, N.5
  • 41
    • 0026067797 scopus 로고
    • 16S ribosomal DNA amplification for phylogenetic study
    • Weisburg, W.G., Barns, S.M., Pelletier, D.A., and Lane, D.J. (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173: 697-703.
    • (1991) J Bacteriol , vol.173 , pp. 697-703
    • Weisburg, W.G.1    Barns, S.M.2    Pelletier, D.A.3    Lane, D.J.4
  • 42
    • 33747883186 scopus 로고    scopus 로고
    • Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng
    • Weon, H.Y., Kim, B.Y., Yoo, S.H., Lee, S.Y., Kwon, S.W., Go, S.J., and Stackebrandt, E. (2006) Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng. Int J Syst Evol Microbiol 56: 1777-1782.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 1777-1782
    • Weon, H.Y.1    Kim, B.Y.2    Yoo, S.H.3    Lee, S.Y.4    Kwon, S.W.5    Go, S.J.6    Stackebrandt, E.7
  • 44
    • 68149099020 scopus 로고    scopus 로고
    • Evidence for a novel mechanism of microbial cellulose degradation
    • Wilson, D. (2009) Evidence for a novel mechanism of microbial cellulose degradation. Cellulose 16: 723-727.
    • (2009) Cellulose , vol.16 , pp. 723-727
    • Wilson, D.1
  • 45
    • 10844228836 scopus 로고    scopus 로고
    • Microplate-based filter paper assay to measure total cellulase activity
    • Xiao, Z., Storms, R., and Tsang, A. (2004) Microplate-based filter paper assay to measure total cellulase activity. Biotechnol Bioeng 88: 832-837.
    • (2004) Biotechnol Bioeng , vol.88 , pp. 832-837
    • Xiao, Z.1    Storms, R.2    Tsang, A.3


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