Thermobacillus composti sp. nov., a moderately thermophilic bacterium isolated from a composting reactor

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 7, 2007, Pages 1473-1477

  Watanabe, Keiko ^a   Nagao, Norio ^b   Yamamoto, Shuich ^a   Toda, Tatsuki ^a   Kurosawa, Norio ^a  

^a SOKA UNIVERSITY   (Japan)

^b SEAWELL Co Ltd   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; GUANINE; RNA 16S; SODIUM CHLORIDE;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; FED BATCH REACTOR; GENE INSERTION SEQUENCE; GENE SEQUENCE; GENOTYPE; GRAM NEGATIVE BACTERIUM; MICROBIAL MORPHOLOGY; MOLECULAR PHYLOGENY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; TEMPERATURE DEPENDENCE; THERMOBACILLUS COMPOSTI; THERMOBACILLUS XYLANILYTICUS; THERMOPHILIC BACTERIUM;

BASE COMPOSITION; DNA TRANSPOSABLE ELEMENTS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; GRAM-NEGATIVE AEROBIC RODS AND COCCI; HEAT; HYDROGEN-ION CONCENTRATION; MICROSCOPY, ELECTRON, SCANNING; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SODIUM CHLORIDE; SOIL; SOIL MICROBIOLOGY; TEMPERATURE;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; THERMOBACILLUS; THERMOBACILLUS XYLANILYTICUS;

EID: 34547421702     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64672-0     Document Type: Article

References (16)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Barrow, G. I. & Feltham, R. K. A. (1993). Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press.
3. Dees, P. M. & Ghiorse, W. C. (2001). Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA. FEMS Microbiol Ecol 35, 207-216.
4. Enright, M. R., McInerney, J. O. & Griffin, C. T. (2003). Characterization of endospore-forming bacteria associated with entomopathogenic nematodes, Heterorhabditis spp., and description of Paenibacillus nematophilus sp. nov. Int J Syst Evol Microbiol 53, 435-441.
5. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
6. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
7. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Department of Genome Sciences, University of Washington, Seattle, USA.
8. Haruta, S., Kondo, M., Nakamura, K., Aiba, H., Ueno, S., Ishii, M. & Igarashi, Y. (2002). Microbial community changes during organic solid waste treatment analyzed by double gradient-denaturing gradient gel electrophoresis and fluorescence in situ hybridization. Appl Microbiol Biotechnol 60, 224-231.
9. Iida, K., Ueda, Y., Kawamura, Y., Ezaki, T., Takade, A., Yoshida, S. & Amako, K. (2005). Paenibacillus motobuensis sp. nov., isolated from a composting machine utilizing soil from Motobu-town, Okinawa, Japan. Int J Syst Evol Microbiol 55, 1811-1816.
10. Katayama-Fujimura, Y., Komatsu, Y., Kuraishi, H. & Kaneko, T. (1984). Estimation of DNA base composition by high performance liquid chromatography of its nuclease P1 hydrolysate. Agric Biol Chem 48, 3169-3172.
11. Kurosawa, N., Itoh, Y. H., Iwai, T., Sugai, A., Uda, I., Kimura, N., Horiuchi, T. & Itoh, T. (1998). Sulfurisphaera ohwakuensis gen. nov., sp. nov., a novel extremely thermophilic acidophile of the order Sulfolobales. Int J Syst Bacteriol 48, 451-456.
12. Nakamura, K., Haruta, S., Ueno, S., Ishii, M., Yokota, A. & Igarashi, Y. (2004). Cerasibacillus quisquiliarum gen. nov., sp. nov., isolated from a semi-continuous decomposing system of kitchen refuse. Int J Syst Evol Microbiol 54, 1063-1069.
13. Narihiro, T., Abe, T., Yamanaka, Y. & Hiraishi, A. (2004). Microbial population dynamics during fed-batch operation of commercially available garbage composters. Appl Microbiol Biotechnol 65, 488-495.
14. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
15. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL_W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
16. Touzel, J. P., O'Donohue, M., Debeire, P., Samain, E. & Breton, C. (2000). Thermobacillus xylanilyticus gen. nov., sp. nov., a new aerobic thermophilic xylan-degrading bacterium isolated from farm soil. Int J Syst Evol Microbiol 50, 315-320.