Lacibacter cauensis gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from sediment of a eutrophic lake

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 5, 2009, Pages 1153-1157

  Qu, Jian Hang ^a   Yuan, Hong Li ^a   Yang, Jin Shui ^a   Li, Hai Feng ^a   Chen, Nan ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; GENOMIC DNA; GUANINE; RNA 16S; BACTERIAL DNA; FATTY ACID; FRESH WATER; RIBOSOME DNA;

ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; BACTEROIDETES; CHINA; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA CONTENT; GRAM NEGATIVE AEROBIC RODS AND COCCI; LACIBACTER CAUENSIS; LAKE; LIPID COMPOSITION; MICROBIAL MORPHOLOGY; MOLECULAR GENETICS; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENETIC TREE; PRIORITY JOURNAL; SEDIMENT; SEQUENCE ANALYSIS; TYPE STRAIN; CLASSIFICATION; DNA SEQUENCE; EUTROPHICATION; GENETICS; GENOTYPE; ISOLATION AND PURIFICATION; MICROBIOLOGY; PHYLOGENY; PHYSIOLOGY; RNA GENE; SPECIES DIFFERENCE;

BACTEROIDETES; NEGIBACTERIA; NIASTELLA; NIASTELLA KOREENSIS;

BACTERIAL TYPING TECHNIQUES; BACTEROIDETES; BASE COMPOSITION; CHINA; DNA, BACTERIAL; DNA, RIBOSOMAL; EUTROPHICATION; FATTY ACIDS; FRESH WATER; GENES, RRNA; GENOTYPE; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 67649815348     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.003475-0     Document Type: Article

References (14)

1. Bernardet, J. F., Nakagawa, Y. & Holmes, B. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
2. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
3. De Ley, J. (1970). Reexamination of the association between melting point, buoyant density, and chemical base composition of deoxyribonucleic acid. J Bacteriol 101, 738-754.
4. Dong, X.-Z. & Cai, M.-Y. (2001). Determinative Manual for Routine Bacteriology. Beijing: Scientific Press.
5. Garrity, G., Lilburn, T., Cole, J., Harrison, S., Euzéby, J. & Tindall, B. (2007). Part 11 - The Bacteria: Phyla 'Planctomycetes', 'Chlamydiae', 'Spirochaetes', 'Fibrobacteres', 'Acidobacteria', 'Bacteroidetes', 'Fusobacteria', 'Verrucomicrobia', 'Dictyoglomi', 'Gemmatomonadetes', and 'Lentisphaerae'. In The Taxonomic Outline of Bacteria and Archaea, TOBA release 7.7. doi: 10.1601/toba.v7i7.188
6. Kämpfer,P., Young, C. C., Sridhar, K. R., Arun, A. B., Lai, W. A., Shen, F. T. & Rekha, P. D. (2006). Transfer of [Flexibacter] sancti, [Flexibacter] filiformis, [Flexibacter] japonensis, and [Cytophaga] arvensicola to the genus Chitinophaga and description of Chitinophaga skermanii sp. nov. Int J Syst Evol Microbiol 56, 2223-2228.
7. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
8. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
9. Sambrook, J. & Russell, D. W. (2001). Molecular Cloning, a Laboratory Manual, 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
10. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
11. Weon, H.-Y., Kim, B.-Y., Yoo, S.-H., Lee, S.-Y., Kwon, S.-W., Go, S.-J. & Stackebrandt, E. (2006). Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng. Int J Syst Evol Microbiol 56, 1777-1782.
12. Xie, C.-H. & Yokota, A. (2006). Reclassification of [Flavobacterium] ferrugineum as Terrimonas ferruginea gen. nov., comb. nov., and description of Terrimonas lutea sp. nov., isolated from soil. Int J Syst Evol Microbiol 56, 1117-1121.
13. Yi, H. & Chun, J. (2006). Flavobacterium weaverense sp. nov. and Flavobacterium segetis sp. nov., novel psychrophiles isolated from the Antarctic. Int J Syst Evol Microbiol 56, 1239-1244.
14. Yoon, M.-H. & Im, W.-T. (2007). Flavisolibacter ginsengiterrae gen. nov., sp. nov. and Flavisolibacter ginsengisoli sp. nov., isolated from ginseng cultivating soil. Int J Syst Evol Microbiol 57, 1834-1839.