Two ATP-binding cassette transporters involved in (S)-2-aminoethyl-cysteine uptake in Thermus thermophilus

Journal of Bacteriology

Volumn 195, Issue 17, 2013, Pages 3845-3853

  Kanemaru, Yuko ^a   Hasebe, Fumihito ^a   Tomita, Takeo ^a   Kuzuyama, Tomohisa ^a   Nishiyama, Makoto ^a,b  

^a UNIVERSITY OF TOKYO   (Japan)

^b RIKEN SPring 8 Center   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

2 AMINOETHYL CYSTEINE; ABC TRANSPORTER; CYSTEINE DERIVATIVE; DIHYDROTACHYSTEROL; DNA FRAGMENT; LYSINE; NUCLEOTIDE BINDING PROTEIN; PERIPLASMIC BINDING PROTEIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL MUTAGENESIS; COSMID; CRYSTAL STRUCTURE; GENE MUTATION; MUTANT; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN CONFORMATION; THERMOSTABILITY; THERMUS THERMOPHILUS; WILD TYPE;

ANTI-BACTERIAL AGENTS; ATP-BINDING CASSETTE TRANSPORTERS; BINDING SITES; BIOLOGICAL TRANSPORT; CRYSTALLOGRAPHY, X-RAY; CYSTEINE; DNA MUTATIONAL ANALYSIS; DRUG RESISTANCE, BACTERIAL; GENE LIBRARY; MODELS, MOLECULAR; PROTEIN BINDING; PROTEIN CONFORMATION; SEQUENCE ANALYSIS, DNA; THERMUS THERMOPHILUS;

EID: 84883537718     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00202-13     Document Type: Article

References (30)

1. Grundy FJ, Lehman SC, Henkin TM. 2003. The L box regulon: lysine sensing by leader RNAs of bacterial lysine biosynthesis genes. Proc. Natl. Acad. Sci. U. S. A. 100:12057-12062.
2. Sudarsan N, Wickiser JK, Nakamura S, Ebert MS, Breaker RR. 2003. An mRNA structure in bacteria that controls gene expression by binding lysine. Genes Dev. 17:2688-2697.
3. Shiio I, Miyajima R, Sano K. 1970. Genetically desensitized aspartate kinase to the concerted feedback inhibition in Brevibacterium flavum. J. Biochem. 68:701-710.
4. Ataide SF, Wilson SN, Dang S, Rogers TE, Roy B, Banerjee R, Henkin TM, Ibba M. 2007. Mechanisms of resistance to an amino acid antibiotic that targets translation. ACS Chem. Biol. 2:819-827.
5. Kobashi N, Nishiyama M, Tanokura M. 1999. Aspartate kinaseindependent lysine synthesis in an extremely thermophilic bacterium, Thermus thermophilus: lysine is synthesized via α-aminoadipic acid, not via diaminopimelic acid. J. Bacteriol. 181:1713-1718.
6. Nishida H, Nishiyama M, Kobashi N, Kosuge T, Hoshino T, Yamane H. 1999. A prokaryotic gene cluster involved in synthesis of lysine through the amino adipate pathway: a key to the evolution of amino acid biosynthesis. Genome Res. 9:1175-1183.
7. Tsubouchi T, Mineki R, Taka H, Kaga N, Murayama K, Nishiyama C, Yamane H, Kuzuyama T, Nishiyama M. 2005. Leader peptide-mediated transcriptional attenuation of lysine biosynthetic gene cluster in Thermus thermophilus. J. Biol. Chem. 280:18511-18516.
8. Wulandari AP, Miyazaki J, Kobashi N, Nishiyama M, Hoshino T, Yamane H. 2002. Characterization of bacterial homocitrate synthase involved in lysine biosynthesis. FEBS Lett. 522:35-40.
9. Okada T, Tomita T, Wulandari AP, Kuzuyama T, Nishiyama M. 2010. Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus. J. Biol. Chem. 285:4195-4205.
10. Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
11. Koyama Y, Hoshino T, Tomizuka N, Furukawa K. 1986. Genetic transformation of the extreme thermophile Thermus thermophilus and of other Thermus spp. J. Bacteriol. 166:338-340.
12. Tanaka T, Kawano N, Oshima T. 1981. Cloning of 3-isopropylmalate dehydrogenase gene of an extreme thermophile and partial purification of the gene product. J. Biochem. 89:677-682.
13. Bierman M, Logan R, O'Brien K, Seno ET, Rao RN, Schoner BE. 1992. Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp. Gene 116:43-49.
14. Hoseki J, Okamoto A, Takada N, Suenaga A, Futatsugi N, Konagaya A, Taiji M, Yano T, Kuramitsu S, Kagamiyama H. 2003. Increased rigidity of domain structures enhances the stability of a mutant enzyme created by directed evolution. Biochemistry 42:14469-14475.
15. Nakamura A, Takakura Y, Kobayashi H, Hoshino T. 2005. In vivo directed evolution for thermostabilization of Escherichia coli hygromycin B phosphotransferase and the use of the gene as a selection marker in the host-vector system of Thermus thermophilus. J. Biosci. Bioeng. 100:158-163.
16. Nielsen H, Engelbrecht J, Brunak S, von Heijne G. 1997. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng. 10:1-6.
17. Jez JM, Ferrer JL, Bowman ME, Dixon RA, Noel JP. 2000. Dissection of malonyl-coenzyme A decarboxylation from polyketide formation in the reaction mechanism of a plant polyketide synthase. Biochemistry 39:890-902.
18. Otwinowski Z, Minor W. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276:307-326.
19. McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ. 2007. Phaser crystallographic software. J. Appl. Crystallogr. 40:658-674.
20. Collaborative Computational Project Number 4. 1994. The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D 50:760-763.
21. Oh BH, Pandit J, Kang CH, Nikaido K, Gokcen S, Ames GF, Kim SH. 1993. Three-dimensional structures of the periplasmic lysine/arginine/ornithine-binding protein with and without a ligand. J. Biol. Chem. 268:11348-11355.
22. Murshudov GN, Vagin AA, Dodson EJ. 1997. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D 53:240-255.
23. Emsley P, Cowtan K. 2004. Coot: model-building tools for molecular graphics. Acta Crystallogr. D 60:2126-2132.
24. Laskowski RA, MacArthur MW, Moss DS, Thornton JM. 1993. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26:283-291.
25. Karpowich N, Martsinkevich O, Millen L, Yuan YR, Dai PL, MacVey K, Thomas PJ, Hunt JF. 2001. Crystal structures of the MJ1267 ATP binding cassette reveal an induced-fit effect at the ATPase active site of an ABC transporter. Structure 9:571-586.
26. Holm L, Kaariainen S, Rosenstrom P, Schenkel A. 2008. Searching protein structure databases with DaliLite v.3. Bioinformatics 24:2780-2781.
27. Oh BH, Ames GF, Kim SH. 1994. Structural basis for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein. J. Biol. Chem. 269:26323-26330.
28. Vahedi-Faridi A, Eckey V, Scheffel F, Alings C, Landmesser H, Schneider E, Saenger W. 2008. Crystal structures and mutational analysis of the arginine-, lysine-, histidine-binding protein ArtJ from Geobacillus stearothermophilus. Implications for interactions of ArtJ with its cognate ATPbinding cassette transporter, Art(MP)2. J. Mol. Biol. 375:448-459.
29. Gounder K, Brzuszkiewicz E, Liesegang H, Wollherr A, Daniel R, Gottschalk G, Reva O, Kumwenda B, Srivastava M, Bricio C, Berenguer J, van Heerden E, Litthauer D. 2011. Sequence of the hyperplastic genome of the naturally competent Thermus scotoductus SA-01. BMC Genomics 12:577. doi:10.1186/1471-2164-12-577.
30. Copeland A, Gu W, Yasawong M, Lapidus A, Lucas S, Deshpande S, Pagani I, Tapia R, Cheng JF, Goodwin LA, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Pan C, Brambilla EM, Rohde M, Tindall BJ, Sikorski J, Goker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T. 2012. Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1T) from a deep-sea hydrothermal vent chimney. Stand. Genomic Sci. 6:21-30.