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Volumn 12, Issue , 2011, Pages

Sequence of the hyperplastic genome of the naturally competent Thermus scotoductus SA-01

Author keywords

[No Author keywords available]

Indexed keywords

PHENOL DERIVATIVE; PROTEIN HISTIDINE KINASE; BACTERIAL DNA;

EID: 82055163989     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-577     Document Type: Article
Times cited : (50)

References (80)
  • 4
    • 29144452882 scopus 로고    scopus 로고
    • Desulfotomaculum and Methanobacterium spp. dominate a 4- to 5-kilometer-deep fault
    • 10.1128/AEM.71.12.8773-8783.2005, 1317344, 16332873
    • Moser DP, Gihring TM, Brockman FJ, Fredrickson JK, Balkwill DL, Dollhopf ME, et al. Desulfotomaculum and Methanobacterium spp. dominate a 4- to 5-kilometer-deep fault. Appl Environ Microbiol 2005, 71:8773-8783. 10.1128/AEM.71.12.8773-8783.2005, 1317344, 16332873.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8773-8783
    • Moser, D.P.1    Gihring, T.M.2    Brockman, F.J.3    Fredrickson, J.K.4    Balkwill, D.L.5    Dollhopf, M.E.6
  • 5
    • 33947312626 scopus 로고    scopus 로고
    • The origin and age of biogeochemical trends in deep fracture water of the Witwatersrand Basin, South Africa
    • Onstott TC, Lin LH, Davidson M, Mislowack B, Borcsik M, Hall J, et al. The origin and age of biogeochemical trends in deep fracture water of the Witwatersrand Basin, South Africa. Geomicrobiology Journal 2006, 23:369-414.
    • (2006) Geomicrobiology Journal , vol.23 , pp. 369-414
    • Onstott, T.C.1    Lin, L.H.2    Davidson, M.3    Mislowack, B.4    Borcsik, M.5    Hall, J.6
  • 6
    • 53749096964 scopus 로고    scopus 로고
    • Environmental genomics reveals a single-species ecosystem deep within earth
    • 10.1126/science.1155495, 18845759
    • Chivian D, Brodie EL, Alm EJ, Culley DE, Dehal PS, DeSantis TZ, et al. Environmental genomics reveals a single-species ecosystem deep within earth. Science 2008, 322:275-278. 10.1126/science.1155495, 18845759.
    • (2008) Science , vol.322 , pp. 275-278
    • Chivian, D.1    Brodie, E.L.2    Alm, E.J.3    Culley, D.E.4    Dehal, P.S.5    DeSantis, T.Z.6
  • 7
    • 61549106933 scopus 로고    scopus 로고
    • Thermus thermophilus as biological model
    • 10.1007/s00792-009-0226-6, 19156357
    • Cava F, Hidalgo A, Berenguer J. Thermus thermophilus as biological model. Extremophiles 2009, 13:213-231. 10.1007/s00792-009-0226-6, 19156357.
    • (2009) Extremophiles , vol.13 , pp. 213-231
    • Cava, F.1    Hidalgo, A.2    Berenguer, J.3
  • 8
    • 35448934965 scopus 로고    scopus 로고
    • Aerobic Cr(VI) reduction by Thermus scotoductus strain SA-01
    • 10.1111/j.1365-2672.2007.03429.x, 17953600
    • Opperman DJ, van Heerden E. Aerobic Cr(VI) reduction by Thermus scotoductus strain SA-01. J Appl Microbiol 2007, 103:1907-1913. 10.1111/j.1365-2672.2007.03429.x, 17953600.
    • (2007) J Appl Microbiol , vol.103 , pp. 1907-1913
    • Opperman, D.J.1    van Heerden, E.2
  • 10
    • 41949115394 scopus 로고    scopus 로고
    • A novel chromate reductase from Thermus scotoductus SA-01 related to old yellow enzyme
    • 10.1128/JB.01766-07, 2293266, 18263719
    • Opperman DJ, Piater LA, van Heerden E. A novel chromate reductase from Thermus scotoductus SA-01 related to old yellow enzyme. J Bacteriol 2008, 190:3076-3082. 10.1128/JB.01766-07, 2293266, 18263719.
    • (2008) J Bacteriol , vol.190 , pp. 3076-3082
    • Opperman, D.J.1    Piater, L.A.2    van Heerden, E.3
  • 11
    • 39649123471 scopus 로고    scopus 로고
    • A membrane-associated protein with Cr(VI)-reducing activity from Thermus scotoductus SA-01
    • 10.1111/j.1574-6968.2007.01063.x, 18218019
    • Opperman DJ, van Heerden E. A membrane-associated protein with Cr(VI)-reducing activity from Thermus scotoductus SA-01. FEMS Microbiol Lett 2008, 280:210-218. 10.1111/j.1574-6968.2007.01063.x, 18218019.
    • (2008) FEMS Microbiol Lett , vol.280 , pp. 210-218
    • Opperman, D.J.1    van Heerden, E.2
  • 12
    • 33751232920 scopus 로고    scopus 로고
    • Isolation of a soluble and membrane-associated Fe(III) reductase from the thermophile, Thermus scotoductus (SA-01)
    • 10.1111/j.1574-6968.2006.00499.x, 17073940
    • Moller C, van Heerden E. Isolation of a soluble and membrane-associated Fe(III) reductase from the thermophile, Thermus scotoductus (SA-01). FEMS Microbiol Lett 2006, 265:237-243. 10.1111/j.1574-6968.2006.00499.x, 17073940.
    • (2006) FEMS Microbiol Lett , vol.265 , pp. 237-243
    • Moller, C.1    van Heerden, E.2
  • 13
    • 74049138332 scopus 로고    scopus 로고
    • A thioredoxin reductase-like protein from the thermophile, Thermus scotoductus SA-01, displaying iron reductase activity
    • 10.1111/j.1574-6968.2009.01852.x, 20132311
    • Bester PA, Litthauer D, Piater LA, van Heerden E. A thioredoxin reductase-like protein from the thermophile, Thermus scotoductus SA-01, displaying iron reductase activity. FEMS Microbiol Lett 2010, 302:182-188. 10.1111/j.1574-6968.2009.01852.x, 20132311.
    • (2010) FEMS Microbiol Lett , vol.302 , pp. 182-188
    • Bester, P.A.1    Litthauer, D.2    Piater, L.A.3    van Heerden, E.4
  • 14
    • 2342586677 scopus 로고    scopus 로고
    • The genome sequence of the extreme thermophile Thermus thermophilus
    • 10.1038/nbt956, 15064768
    • Henne A, Brüggemann H, Raasch C, Wiezer A, Hartsch T, Liesegang H, et al. The genome sequence of the extreme thermophile Thermus thermophilus. Nat Biotechnol 2004, 22:547-553. 10.1038/nbt956, 15064768.
    • (2004) Nat Biotechnol , vol.22 , pp. 547-553
    • Henne, A.1    Brüggemann, H.2    Raasch, C.3    Wiezer, A.4    Hartsch, T.5    Liesegang, H.6
  • 15
    • 33745991943 scopus 로고    scopus 로고
    • Comparative genomics of Thermus thermophilus: Plasticity of the megaplasmid and its contribution to a thermophilic lifestyle
    • 10.1016/j.jbiotec.2006.03.043, 16713647
    • Brüggemann H, Chen C. Comparative genomics of Thermus thermophilus: Plasticity of the megaplasmid and its contribution to a thermophilic lifestyle. J Biotechnol 2006, 124:654-661. 10.1016/j.jbiotec.2006.03.043, 16713647.
    • (2006) J Biotechnol , vol.124 , pp. 654-661
    • Brüggemann, H.1    Chen, C.2
  • 16
    • 77957830494 scopus 로고    scopus 로고
    • An Extreme Thermophile, Thermus thermophilus, Is a Polyploid Bacterium
    • 10.1128/JB.00662-10, 2950507, 20729360
    • Ohtani N, Tomita M, Itaya M. An Extreme Thermophile, Thermus thermophilus, Is a Polyploid Bacterium. J Bacteriol 2010, 192:5499-5505. 10.1128/JB.00662-10, 2950507, 20729360.
    • (2010) J Bacteriol , vol.192 , pp. 5499-5505
    • Ohtani, N.1    Tomita, M.2    Itaya, M.3
  • 17
    • 62549084295 scopus 로고    scopus 로고
    • Recombination and Replication in DNA Repair of Heavily Irradiated Deinococcus radiodurans
    • 10.1016/j.cell.2009.01.018, 19303848
    • Slade D, Lindner AB, Paul G, Radman M. Recombination and Replication in DNA Repair of Heavily Irradiated Deinococcus radiodurans. Cell 2009, 136:1044-1055. 10.1016/j.cell.2009.01.018, 19303848.
    • (2009) Cell , vol.136 , pp. 1044-1055
    • Slade, D.1    Lindner, A.B.2    Paul, G.3    Radman, M.4
  • 19
    • 64349100581 scopus 로고    scopus 로고
    • Shuffling genes around in hot environments: The unique DNA transporter of Thermus thermophilus
    • 10.1111/j.1574-6976.2008.00160.x, 19207744
    • Averhoff B. Shuffling genes around in hot environments: The unique DNA transporter of Thermus thermophilus. FEMS MICROBIOL REV 2009, 33:611-626. 10.1111/j.1574-6976.2008.00160.x, 19207744.
    • (2009) FEMS MICROBIOL REV , vol.33 , pp. 611-626
    • Averhoff, B.1
  • 20
    • 77955325659 scopus 로고    scopus 로고
    • Exploring research frontiers in microbiology: Recent advances in halophilic and thermophilic extremophiles
    • 10.1016/j.resmic.2010.05.006, 20594981
    • Averhoff B, Müller V. Exploring research frontiers in microbiology: Recent advances in halophilic and thermophilic extremophiles. Res Microbiol 2010, 161:506-514. 10.1016/j.resmic.2010.05.006, 20594981.
    • (2010) Res Microbiol , vol.161 , pp. 506-514
    • Averhoff, B.1    Müller, V.2
  • 21
    • 33748317821 scopus 로고    scopus 로고
    • Characterization of DNA transport in the thermophilic bacterium Thermus thermophilus HB27
    • 10.1111/j.1742-4658.2006.05416.x, 16939619
    • Schwarzenlander C, Averhoff B. Characterization of DNA transport in the thermophilic bacterium Thermus thermophilus HB27. FEBS J 2006, 273:4210-4218. 10.1111/j.1742-4658.2006.05416.x, 16939619.
    • (2006) FEBS J , vol.273 , pp. 4210-4218
    • Schwarzenlander, C.1    Averhoff, B.2
  • 22
    • 63849107738 scopus 로고    scopus 로고
    • The role of single subunits of the DNA transport machinery of Thermus thermophilus HB27 in DNA binding and transport
    • 10.1111/j.1462-2920.2008.01801.x, 19396940
    • Schwarzenlander C, Haase W, Averhoff B. The role of single subunits of the DNA transport machinery of Thermus thermophilus HB27 in DNA binding and transport. Environ Microbiol 2009, 11:801-808. 10.1111/j.1462-2920.2008.01801.x, 19396940.
    • (2009) Environ Microbiol , vol.11 , pp. 801-808
    • Schwarzenlander, C.1    Haase, W.2    Averhoff, B.3
  • 23
    • 0035085816 scopus 로고    scopus 로고
    • Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context
    • 10.1101/gr.GR-1619R, 11230160
    • Wolf YI, Rogozin IB, Kondrashov AS, Koonin EV. Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. Genome Res 2001, 11:356-372. 10.1101/gr.GR-1619R, 11230160.
    • (2001) Genome Res , vol.11 , pp. 356-372
    • Wolf, Y.I.1    Rogozin, I.B.2    Kondrashov, A.S.3    Koonin, E.V.4
  • 25
    • 27744595408 scopus 로고    scopus 로고
    • Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: Divergent routes of adaptation to thermophily and radiation resistance
    • Omelchenko MV, Wolf YI, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, et al. Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: Divergent routes of adaptation to thermophily and radiation resistance. BMC Evol Biol 2005, 5.
    • (2005) BMC Evol Biol , vol.5
    • Omelchenko, M.V.1    Wolf, Y.I.2    Gaidamakova, E.K.3    Matrosova, V.Y.4    Vasilenko, A.5    Zhai, M.6
  • 26
    • 63049136958 scopus 로고    scopus 로고
    • The genome of thermosipho africanus TCF52B: Lateral genetic connections to the firmicutes and archaea
    • 10.1128/JB.01448-08, 2648366, 19124572
    • Nesbo C, Bapteste E, Curtis B, Dahle H, Lopez P, Macleod D, et al. The genome of thermosipho africanus TCF52B: Lateral genetic connections to the firmicutes and archaea. J Bacteriol 2009, 191:1974-1978. 10.1128/JB.01448-08, 2648366, 19124572.
    • (2009) J Bacteriol , vol.191 , pp. 1974-1978
    • Nesbo, C.1    Bapteste, E.2    Curtis, B.3    Dahle, H.4    Lopez, P.5    Macleod, D.6
  • 27
    • 0030994798 scopus 로고    scopus 로고
    • Amelioration of bacterial genomes: Rates of change and exchange
    • 10.1007/PL00006158, 9089078
    • Lawrence JG, Ochman H. Amelioration of bacterial genomes: Rates of change and exchange. J Mol Evol 1997, 44:383-397. 10.1007/PL00006158, 9089078.
    • (1997) J Mol Evol , vol.44 , pp. 383-397
    • Lawrence, J.G.1    Ochman, H.2
  • 28
    • 83155184895 scopus 로고    scopus 로고
    • Structural and chemical characterization of a natural fracture surface from 2.8 kilometers below land surface
    • Wanger G, Southam G. Structural and chemical characterization of a natural fracture surface from 2.8 kilometers below land surface. Geochim Cosmochim Acta 2005, 69:A835.
    • (2005) Geochim Cosmochim Acta , vol.69
    • Wanger, G.1    Southam, G.2
  • 29
    • 34547951702 scopus 로고    scopus 로고
    • Electron transfer kinetics of soluble fragments indicate a direct interaction between complex III and the caa3 oxidase in Thermus thermophilus
    • 10.1080/15216540701242482, 17701551
    • Janzon J, Ludwig B, Malatesta F. Electron transfer kinetics of soluble fragments indicate a direct interaction between complex III and the caa3 oxidase in Thermus thermophilus. Iubmb Life 2007, 59:563-569. 10.1080/15216540701242482, 17701551.
    • (2007) Iubmb Life , vol.59 , pp. 563-569
    • Janzon, J.1    Ludwig, B.2    Malatesta, F.3
  • 30
  • 31
    • 0038541683 scopus 로고    scopus 로고
    • Microbial reduction of metals and radionuclides
    • 10.1016/S0168-6445(03)00044-5, 12829277
    • Lloyd JR. Microbial reduction of metals and radionuclides. FEMS MICROBIOL REV 2003, 27:411-425. 10.1016/S0168-6445(03)00044-5, 12829277.
    • (2003) FEMS MICROBIOL REV , vol.27 , pp. 411-425
    • Lloyd, J.R.1
  • 32
    • 20444378554 scopus 로고    scopus 로고
    • Genome-assisted analysis of dissimilatory metal-reducing bacteria
    • 10.1016/j.copbio.2005.04.001, 15961027
    • Fredrickson JK, Romine MF. Genome-assisted analysis of dissimilatory metal-reducing bacteria. Current Opinion in Biotechnology 2005, 16:269-274. 10.1016/j.copbio.2005.04.001, 15961027.
    • (2005) Current Opinion in Biotechnology , vol.16 , pp. 269-274
    • Fredrickson, J.K.1    Romine, M.F.2
  • 35
    • 13544263302 scopus 로고    scopus 로고
    • Genes and enzymes involved in bacterial oxidation and reduction of inorganic arsenic
    • 10.1128/AEM.71.2.599-608.2005, 546828, 15691908
    • Silver S, Phung LT. Genes and enzymes involved in bacterial oxidation and reduction of inorganic arsenic. Appl Environ Microbiol 2005, 71:599-608. 10.1128/AEM.71.2.599-608.2005, 546828, 15691908.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 599-608
    • Silver, S.1    Phung, L.T.2
  • 36
    • 0035856582 scopus 로고    scopus 로고
    • Arsenite oxidation and arsenate respiration by a new Thermus isolate
    • 10.1111/j.1574-6968.2001.tb10907.x, 11731145
    • Gihring TM, Banfield JF. Arsenite oxidation and arsenate respiration by a new Thermus isolate. FEMS Microbiol Lett 2001, 204:335-340. 10.1111/j.1574-6968.2001.tb10907.x, 11731145.
    • (2001) FEMS Microbiol Lett , vol.204 , pp. 335-340
    • Gihring, T.M.1    Banfield, J.F.2
  • 37
    • 0035477803 scopus 로고    scopus 로고
    • Rapid arsenite oxidation by Thermus aquaticus and Thermus thermophilus: Field and laboratory investigations
    • 10.1021/es010816f, 11642444
    • Gihring TM, Druschel GK, Mccleskey RB, Hamers RJ, Banfield JF. Rapid arsenite oxidation by Thermus aquaticus and Thermus thermophilus: Field and laboratory investigations. Environ Sci Technol 2001, 35:3857-3862. 10.1021/es010816f, 11642444.
    • (2001) Environ Sci Technol , vol.35 , pp. 3857-3862
    • Gihring, T.M.1    Druschel, G.K.2    Mccleskey, R.B.3    Hamers, R.J.4    Banfield, J.F.5
  • 38
    • 43049115300 scopus 로고    scopus 로고
    • Selenate-dependent anaerobic arsenite oxidation by a bacterium from Mono Lake, California
    • 10.1128/AEM.01995-07, 2394884, 18326681
    • Fisher JC, Hollibaugh JT. Selenate-dependent anaerobic arsenite oxidation by a bacterium from Mono Lake, California. Appl Environ Microbiol 2008, 74:2588-2594. 10.1128/AEM.01995-07, 2394884, 18326681.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 2588-2594
    • Fisher, J.C.1    Hollibaugh, J.T.2
  • 39
    • 66649100587 scopus 로고    scopus 로고
    • Redox cycling of arsenic by the hydrothermal marine bacterium Marinobacter santoriniensis
    • 10.1111/j.1462-2920.2009.01890.x, 19226300
    • Handley KM, Hery M, Lloyd JR. Redox cycling of arsenic by the hydrothermal marine bacterium Marinobacter santoriniensis. Environ Microbiol 2009, 11:1601-1611. 10.1111/j.1462-2920.2009.01890.x, 19226300.
    • (2009) Environ Microbiol , vol.11 , pp. 1601-1611
    • Handley, K.M.1    Hery, M.2    Lloyd, J.R.3
  • 40
    • 66149109656 scopus 로고    scopus 로고
    • Marinobacter santoriniensis sp nov., an arsenate-respiring and arsenite-oxidizing bacterium isolated from hydrothermal sediment
    • 10.1099/ijs.0.003145-0, 19329625
    • Handley KM, Hery M, Lloyd JR. Marinobacter santoriniensis sp nov., an arsenate-respiring and arsenite-oxidizing bacterium isolated from hydrothermal sediment. Int J Syst Evol Microbiol 2009, 59:886-892. 10.1099/ijs.0.003145-0, 19329625.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 886-892
    • Handley, K.M.1    Hery, M.2    Lloyd, J.R.3
  • 41
    • 0037565104 scopus 로고    scopus 로고
    • The SmtB/ArsR family of metalloregulatory transcriptional repressors: structural insights into prokaryotic metal resistance
    • 10.1016/S0168-6445(03)00054-8, 12829264
    • Busenlehner LS, Pennella MA, Giedroc DP. The SmtB/ArsR family of metalloregulatory transcriptional repressors: structural insights into prokaryotic metal resistance. FEMS MICROBIOL REV 2003, 27:131-143. 10.1016/S0168-6445(03)00054-8, 12829264.
    • (2003) FEMS MICROBIOL REV , vol.27 , pp. 131-143
    • Busenlehner, L.S.1    Pennella, M.A.2    Giedroc, D.P.3
  • 42
    • 32544435329 scopus 로고    scopus 로고
    • Biochemical and regulatory properties of a respiratory island encoded by a conjugative plasmid in the extreme thermophile Thermus thermophilus
    • 10.1042/BST0340097, 16417492
    • Cava F, Berenguer J. Biochemical and regulatory properties of a respiratory island encoded by a conjugative plasmid in the extreme thermophile Thermus thermophilus. Biochem Soc Trans 2006, 34:97-100. 10.1042/BST0340097, 16417492.
    • (2006) Biochem Soc Trans , vol.34 , pp. 97-100
    • Cava, F.1    Berenguer, J.2
  • 43
    • 0022448655 scopus 로고
    • Genetic-Transformation of the Extreme Thermophile Thermus thermophilus and of Other Thermus Spp
    • 214599, 3957870
    • Koyama Y, Hoshino T, Tomizuka N, Furukawa K. Genetic-Transformation of the Extreme Thermophile Thermus thermophilus and of Other Thermus Spp. J Bacteriol 1986, 166:338-340. 214599, 3957870.
    • (1986) J Bacteriol , vol.166 , pp. 338-340
    • Koyama, Y.1    Hoshino, T.2    Tomizuka, N.3    Furukawa, K.4
  • 44
    • 0037817408 scopus 로고    scopus 로고
    • Pilin-like proteins in the extremely thermophilic bacterium Thermus thermophilus HB27: Implication in competence for natural transformation and links to type IV pilus biogenesis
    • 10.1128/AEM.69.7.3695-3700.2003, 165207, 12839734
    • Friedrich A, Rumszauer J, Henne A, Averhoff B. Pilin-like proteins in the extremely thermophilic bacterium Thermus thermophilus HB27: Implication in competence for natural transformation and links to type IV pilus biogenesis. Appl Environ Microbiol 2003, 69:3695-3700. 10.1128/AEM.69.7.3695-3700.2003, 165207, 12839734.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 3695-3700
    • Friedrich, A.1    Rumszauer, J.2    Henne, A.3    Averhoff, B.4
  • 45
    • 0035408426 scopus 로고    scopus 로고
    • Natural Transformation in Mesophilic and Thermophilic Bacteria: Identification and Characterization of Novel, Closely Related Competence Genes in Adnetobacter sp. Strain BD413 and Thermus thermophilus HB27
    • 10.1128/AEM.67.7.3140-3148.2001, 92993, 11425734
    • Friedrich A, Hartsch T, Averhoff B. Natural Transformation in Mesophilic and Thermophilic Bacteria: Identification and Characterization of Novel, Closely Related Competence Genes in Adnetobacter sp. Strain BD413 and Thermus thermophilus HB27. Appl Environ Microbiol 2001, 67:3140-3148. 10.1128/AEM.67.7.3140-3148.2001, 92993, 11425734.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3140-3148
    • Friedrich, A.1    Hartsch, T.2    Averhoff, B.3
  • 46
    • 0036151806 scopus 로고    scopus 로고
    • Molecular analyses of the natural transformation machinery and identification of pilus structures in the extremely thermophilic bacterium Thermus thermophilus strain HB27
    • 10.1128/AEM.68.2.745-755.2002, 126729, 11823215
    • Friedrich A, Prust C, Hartsch T, Henne A, Averhoff B. Molecular analyses of the natural transformation machinery and identification of pilus structures in the extremely thermophilic bacterium Thermus thermophilus strain HB27. Appl Environ Microbiol 2002, 68:745-755. 10.1128/AEM.68.2.745-755.2002, 126729, 11823215.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 745-755
    • Friedrich, A.1    Prust, C.2    Hartsch, T.3    Henne, A.4    Averhoff, B.5
  • 47
    • 0032146328 scopus 로고    scopus 로고
    • Characterization of a plasmid replicative origin from an extreme thermophile
    • De Grado M, Lasa I, Berenguer J. Characterization of a plasmid replicative origin from an extreme thermophile. FEMS Microbiol Lett 1998, 165:51-57.
    • (1998) FEMS Microbiol Lett , vol.165 , pp. 51-57
    • De Grado, M.1    Lasa, I.2    Berenguer, J.3
  • 48
    • 0032409987 scopus 로고    scopus 로고
    • Suppression of an absolute defect in Type IV pilus biogenesis by loss-of-function mutations in pilT, a twitching motility gene in Neisseria gonorrhoeae
    • 10.1073/pnas.95.25.14973, 24560, 9844000
    • Wolfgang M, Park HS, Hayes SF, van Putten JPM, Koomey M. Suppression of an absolute defect in Type IV pilus biogenesis by loss-of-function mutations in pilT, a twitching motility gene in Neisseria gonorrhoeae. Proc Natl Acad Sci USA 1998, 95:14973-14978. 10.1073/pnas.95.25.14973, 24560, 9844000.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14973-14978
    • Wolfgang, M.1    Park, H.S.2    Hayes, S.F.3    van Putten, J.P.M.4    Koomey, M.5
  • 49
    • 0031824719 scopus 로고    scopus 로고
    • PilT mutations lead to simultaneous defects in competence for natural transformation and twitching motility in piliated Neisseria gonorrhoeae
    • 10.1046/j.1365-2958.1998.00935.x, 9701824
    • Wolfgang M, Lauer P, Park HS, Brossay L, Hebert J, Koomey M. PilT mutations lead to simultaneous defects in competence for natural transformation and twitching motility in piliated Neisseria gonorrhoeae. Mol Microbiol 1998, 29:321-330. 10.1046/j.1365-2958.1998.00935.x, 9701824.
    • (1998) Mol Microbiol , vol.29 , pp. 321-330
    • Wolfgang, M.1    Lauer, P.2    Park, H.S.3    Brossay, L.4    Hebert, J.5    Koomey, M.6
  • 50
    • 0034908143 scopus 로고    scopus 로고
    • Requirement of novel competence genes pilT and pilU of Pseudomonas stutzeri for natural transformation and suppression of pilT deficiency by a hexahistidine tag on the type IV pilus protein PilAI
    • 10.1128/JB.183.16.4694-4701.2001, 99522, 11466271
    • Graupner S, Weger N, Sohni M, Wackernagel W. Requirement of novel competence genes pilT and pilU of Pseudomonas stutzeri for natural transformation and suppression of pilT deficiency by a hexahistidine tag on the type IV pilus protein PilAI. J Bacteriol 2001, 183:4694-4701. 10.1128/JB.183.16.4694-4701.2001, 99522, 11466271.
    • (2001) J Bacteriol , vol.183 , pp. 4694-4701
    • Graupner, S.1    Weger, N.2    Sohni, M.3    Wackernagel, W.4
  • 51
    • 0030008250 scopus 로고    scopus 로고
    • Thermus oshimai sp. nov., isolated from hot springs in Portugal, Iceland, and the azores, and comment on the concept of a limited geographical distribution of Thermus species
    • 10.1099/00207713-46-2-403, 8934898
    • Williams RAD, Smith KE, Welch SG, Micallef J. Thermus oshimai sp. nov., isolated from hot springs in Portugal, Iceland, and the azores, and comment on the concept of a limited geographical distribution of Thermus species. INT J SYST BACTERIOL 1996, 46:403-408. 10.1099/00207713-46-2-403, 8934898.
    • (1996) INT J SYST BACTERIOL , vol.46 , pp. 403-408
    • Williams, R.A.D.1    Smith, K.E.2    Welch, S.G.3    Micallef, J.4
  • 52
    • 5144234957 scopus 로고    scopus 로고
    • Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance
    • 10.1534/genetics.104.029249, 1448114, 15454524
    • Tanaka M, Earl AM, Howell HA, Park MJ, Eisen JA, Peterson SN, et al. Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance. Genetics 2004, 168:21-33. 10.1534/genetics.104.029249, 1448114, 15454524.
    • (2004) Genetics , vol.168 , pp. 21-33
    • Tanaka, M.1    Earl, A.M.2    Howell, H.A.3    Park, M.J.4    Eisen, J.A.5    Peterson, S.N.6
  • 53
    • 0032786234 scopus 로고    scopus 로고
    • Molecular analysis of the Deinococcus radiodurans recA locus and identification of a mutation site in a DNA repair-deficient mutant, rec30
    • 10.1016/S0921-8777(99)00048-8, 10606814
    • Narumi I, Satoh K, Kikuchi M, Funayama T, Kitayama S, Yanagisawa T, et al. Molecular analysis of the Deinococcus radiodurans recA locus and identification of a mutation site in a DNA repair-deficient mutant, rec30. Mutation Research-Dna Repair 1999, 435:233-243. 10.1016/S0921-8777(99)00048-8, 10606814.
    • (1999) Mutation Research-Dna Repair , vol.435 , pp. 233-243
    • Narumi, I.1    Satoh, K.2    Kikuchi, M.3    Funayama, T.4    Kitayama, S.5    Yanagisawa, T.6
  • 54
    • 34047118522 scopus 로고    scopus 로고
    • CRISPR provides acquired resistance against viruses in prokaryotes
    • 10.1126/science.1138140, 17379808
    • Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, et al. CRISPR provides acquired resistance against viruses in prokaryotes. Science 2007, 315:1709-1712. 10.1126/science.1138140, 17379808.
    • (2007) Science , vol.315 , pp. 1709-1712
    • Barrangou, R.1    Fremaux, C.2    Deveau, H.3    Richards, M.4    Boyaval, P.5    Moineau, S.6
  • 55
    • 73149087453 scopus 로고    scopus 로고
    • Transcription Profile of Thermus thermophilus CRISPR Systems after Phage Infection
    • 10.1016/j.jmb.2009.10.057, 19891975
    • Agari Y, Sakamoto K, Tamakoshi M, Oshima T, Kuramitsu S, Shinkai A. Transcription Profile of Thermus thermophilus CRISPR Systems after Phage Infection. J Mol Biol 2010, 395:270-281. 10.1016/j.jmb.2009.10.057, 19891975.
    • (2010) J Mol Biol , vol.395 , pp. 270-281
    • Agari, Y.1    Sakamoto, K.2    Tamakoshi, M.3    Oshima, T.4    Kuramitsu, S.5    Shinkai, A.6
  • 56
    • 0038670732 scopus 로고    scopus 로고
    • The origin of deep subsurface microbial communities in the Witwatersrand Basin, South Africa as deduced from apatite fission track analyses
    • Omar GI, Onstott TC, Hoek J. The origin of deep subsurface microbial communities in the Witwatersrand Basin, South Africa as deduced from apatite fission track analyses. Geofluids 2003, 3:69-80.
    • (2003) Geofluids , vol.3 , pp. 69-80
    • Omar, G.I.1    Onstott, T.C.2    Hoek, J.3
  • 57
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B, Hillier L, Wendl MC, Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 1998, 8:175-185.
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 58
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B, Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 1998, 8:186-194.
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 60
    • 0029592773 scopus 로고
    • A new DNA sequence assembly program
    • 10.1093/nar/23.24.4992, 307504, 8559656
    • Bonfield JK, Smith KF, Staden R. A new DNA sequence assembly program. Nucleic Acids Res 1995, 23:4992-4999. 10.1093/nar/23.24.4992, 307504, 8559656.
    • (1995) Nucleic Acids Res , vol.23 , pp. 4992-4999
    • Bonfield, J.K.1    Smith, K.F.2    Staden, R.3
  • 61
    • 3543051830 scopus 로고    scopus 로고
    • Mauve: Multiple alignment of conserved genomic sequence with rearrangements
    • 10.1101/gr.2289704, 442156, 15231754
    • Darling ACE, Mau B, Blattner FR, Perna NT. Mauve: Multiple alignment of conserved genomic sequence with rearrangements. Genome Res 2004, 14:1394-1403. 10.1101/gr.2289704, 442156, 15231754.
    • (2004) Genome Res , vol.14 , pp. 1394-1403
    • Darling, A.C.E.1    Mau, B.2    Blattner, F.R.3    Perna, N.T.4
  • 64
    • 0035860545 scopus 로고    scopus 로고
    • Pathway databases: A case study in computational symbolic theories
    • 10.1126/science.1064621, 11557880
    • Karp PD. Pathway databases: A case study in computational symbolic theories. Science 2001, 293:2040-2044. 10.1126/science.1064621, 11557880.
    • (2001) Science , vol.293 , pp. 2040-2044
    • Karp, P.D.1
  • 65
    • 51549120596 scopus 로고    scopus 로고
    • The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage
    • Ganesan H, Rakitianskaia AS, Davenport CF, Tummler B, Reva ON. The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage. BMC Bioinform 2008, 9.
    • (2008) BMC Bioinform , vol.9
    • Ganesan, H.1    Rakitianskaia, A.S.2    Davenport, C.F.3    Tummler, B.4    Reva, O.N.5
  • 67
    • 50149094265 scopus 로고    scopus 로고
    • Evaluation of genomic island predictors using a comparative genomics approach
    • Langille MGI, Hsiao WWL, Brinkman FSL. Evaluation of genomic island predictors using a comparative genomics approach. BMC Bioinform 2008, 9.
    • (2008) BMC Bioinform , vol.9
    • Langille, M.G.I.1    Hsiao, W.W.L.2    Brinkman, F.S.L.3
  • 68
    • 61449201423 scopus 로고    scopus 로고
    • IslandViewer: an integrated interface for computational identification and visualization of genomic islands
    • 10.1093/bioinformatics/btp030, 2647836, 19151094
    • Langille MGI, Brinkman FSL. IslandViewer: an integrated interface for computational identification and visualization of genomic islands. Bioinformatics 2009, 25:664-665. 10.1093/bioinformatics/btp030, 2647836, 19151094.
    • (2009) Bioinformatics , vol.25 , pp. 664-665
    • Langille, M.G.I.1    Brinkman, F.S.L.2
  • 69
    • 33745828696 scopus 로고    scopus 로고
    • Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models
    • Waack S, Keller O, Asper R, Brodag T, Damm C, Fricke WF, et al. Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. BMC Bioinform 2006, 7.
    • (2006) BMC Bioinform , vol.7
    • Waack, S.1    Keller, O.2    Asper, R.3    Brodag, T.4    Damm, C.5    Fricke, W.F.6
  • 70
    • 0345237922 scopus 로고    scopus 로고
    • IslandPath: aiding detection of genomic islands in prokaryotes
    • 10.1093/bioinformatics/btg004, 12584130
    • Hsiao W, Wan I, Jones SJ, Brinkman FSL. IslandPath: aiding detection of genomic islands in prokaryotes. Bioinformatics 2003, 19:418-420. 10.1093/bioinformatics/btg004, 12584130.
    • (2003) Bioinformatics , vol.19 , pp. 418-420
    • Hsiao, W.1    Wan, I.2    Jones, S.J.3    Brinkman, F.S.L.4
  • 71
    • 0035942196 scopus 로고    scopus 로고
    • Predicted highly expressed and putative alien genes of Deinococcus radiodurans and implications for resistance to ionizing radiation damage
    • 10.1073/pnas.081077598, 33194, 11296249
    • Karlin S, Mrazek J. Predicted highly expressed and putative alien genes of Deinococcus radiodurans and implications for resistance to ionizing radiation damage. Proc Natl Acad Sci USA 2001, 98:5240-5245. 10.1073/pnas.081077598, 33194, 11296249.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 5240-5245
    • Karlin, S.1    Mrazek, J.2
  • 72
    • 0035312272 scopus 로고    scopus 로고
    • Highly expressed and alien genes of the Synechocystis genome
    • 10.1093/nar/29.7.1590, 31270, 11266562
    • Mrazek J, Bhaya D, Grossman AR, Karlin S. Highly expressed and alien genes of the Synechocystis genome. Nucleic Acids Res 2001, 29:1590-1601. 10.1093/nar/29.7.1590, 31270, 11266562.
    • (2001) Nucleic Acids Res , vol.29 , pp. 1590-1601
    • Mrazek, J.1    Bhaya, D.2    Grossman, A.R.3    Karlin, S.4
  • 73
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • 10.1093/nar/25.17.3389, 146917, 9254694
    • Altschul SF, Madden TL, Schaffer AA, Zhang JH, Zhang Z, Miller W, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.H.4    Zhang, Z.5    Miller, W.6
  • 75
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4:406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 76
    • 0035031966 scopus 로고    scopus 로고
    • A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
    • Whelan S, Goldman N. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol 2001, 18:691-699.
    • (2001) Mol Biol Evol , vol.18 , pp. 691-699
    • Whelan, S.1    Goldman, N.2
  • 77
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
    • Tamura K, Peterson D, Stecher G, Nei M, Kumar S. MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol
    • Mol Biol Evol
    • Tamura, K.1    Peterson, D.2    Stecher, G.3    Nei, M.4    Kumar, S.5
  • 78
    • 0032750230 scopus 로고    scopus 로고
    • A High-Transformation-Efficiency Cloning Vector for Thermus thermophilus
    • 10.1006/plas.1999.1427, 10545266
    • de Grado M, Castán P, Berenguer J. A High-Transformation-Efficiency Cloning Vector for Thermus thermophilus. Plasmid 1999, 42:241-245. 10.1006/plas.1999.1427, 10545266.
    • (1999) Plasmid , vol.42 , pp. 241-245
    • de Grado, M.1    Castán, P.2    Berenguer, J.3
  • 79
    • 79953199074 scopus 로고    scopus 로고
    • Lateral transfer of the denitrification pathway genes among Thermus thermophilus strains
    • 10.1128/AEM.02048-10, 3067210, 21169443
    • Alvarez L, Bricio C, Gomez MJ, Berenguer J. Lateral transfer of the denitrification pathway genes among Thermus thermophilus strains. Appl Environ Microbiol 2011, 77:1352-1358. 10.1128/AEM.02048-10, 3067210, 21169443.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 1352-1358
    • Alvarez, L.1    Bricio, C.2    Gomez, M.J.3    Berenguer, J.4
  • 80
    • 79551468924 scopus 로고    scopus 로고
    • Partial and complete denitrification in Thermus thermophilus: Lessons from genome drafts
    • 10.1042/BST0390249, 21265782
    • Bricio C, Alvarez L, G|omez MJ, Berenguer J. Partial and complete denitrification in Thermus thermophilus: Lessons from genome drafts. Biochem Soc Trans 2011, 39:249-253. 10.1042/BST0390249, 21265782.
    • (2011) Biochem Soc Trans , vol.39 , pp. 249-253
    • Bricio, C.1    Alvarez, L.2    Gomez, M.J.3    Berenguer, J.4


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