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Volumn 33, Issue 18, 2013, Pages 3549-3567

Mechanisms of antisense transcription initiation from the 3' end of the GAL10 coding sequence in vivo

Author keywords

[No Author keywords available]

Indexed keywords

GENERAL TRANSCRIPTION FACTOR; PROTEASOME; RNA POLYMERASE II;

EID: 84883498176     PISSN: 02707306     EISSN: 10985549     Source Type: Journal    
DOI: 10.1128/MCB.01715-12     Document Type: Article
Times cited : (19)

References (111)
  • 1
    • 57749188699 scopus 로고    scopus 로고
    • Diverse regulatory mechanisms of eukaryotic transcriptional activation by the proteasome complex
    • Bhaumik SR, Mailk S. 2008. Diverse regulatory mechanisms of eukaryotic transcriptional activation by the proteasome complex. Crit. Rev. Biochem. Mol. Biol. 43:419-433.
    • (2008) Crit. Rev. Biochem. Mol. Biol. , vol.43 , pp. 419-433
    • Bhaumik, S.R.1    Mailk, S.2
  • 2
    • 79151475627 scopus 로고    scopus 로고
    • Distinct regulatory mechanisms of eukaryotic transcriptional activation by SAGA and TFIID
    • Bhaumik SR. 2011. Distinct regulatory mechanisms of eukaryotic transcriptional activation by SAGA and TFIID. Biochim. Biophys. Acta 1809: 97-108.
    • (2011) Biochim. Biophys. Acta , vol.1809 , pp. 97-108
    • Bhaumik, S.R.1
  • 3
    • 35848951163 scopus 로고    scopus 로고
    • Covalent modifications of histones during development and disease pathogenesis
    • Bhaumik SR, Smith E, Shilatifard A. 2007. Covalent modifications of histones during development and disease pathogenesis. Nat. Struct. Mol. Biol. 14:1008-1016.
    • (2007) Nat. Struct. Mol. Biol. , vol.14 , pp. 1008-1016
    • Bhaumik, S.R.1    Smith, E.2    Shilatifard, A.3
  • 5
    • 0032450899 scopus 로고    scopus 로고
    • Role of general and gene-specific cofactors in the regulation of eukaryotic transcription
    • Roeder RG. 1998. Role of general and gene-specific cofactors in the regulation of eukaryotic transcription. Cold Spring Harbor Symp. Quant. Biol. 63:201-218.
    • (1998) Cold Spring Harbor Symp. Quant. Biol. , vol.63 , pp. 201-218
    • Roeder, R.G.1
  • 7
    • 0037948267 scopus 로고    scopus 로고
    • Diversified transcription initiation complexes expand promoter selectivity and tissue-specific gene expression
    • Hochheimer A, Tjian R. 2003. Diversified transcription initiation complexes expand promoter selectivity and tissue-specific gene expression. Genes Dev. 17:1309-1320.
    • (2003) Genes Dev. , vol.17 , pp. 1309-1320
    • Hochheimer, A.1    Tjian, R.2
  • 8
    • 77952744176 scopus 로고    scopus 로고
    • Natural antisense transcripts regulate gene expression in an epigenetic manner
    • Su WY, Xiong H, Fang JY. 2010. Natural antisense transcripts regulate gene expression in an epigenetic manner. Biochem. Biophys. Res. Commun. 396:177-181.
    • (2010) Biochem. Biophys. Res. Commun. , vol.396 , pp. 177-181
    • Su, W.Y.1    Xiong, H.2    Fang, J.Y.3
  • 9
    • 65349121777 scopus 로고    scopus 로고
    • Histone methylation and ubiquitination with their cross-talk and roles in gene expression and stability
    • Shukla A, Chaurasia P, Bhaumik SR. 2009. Histone methylation and ubiquitination with their cross-talk and roles in gene expression and stability. Cell. Mol. Life Sci. 66:1419-1433.
    • (2009) Cell. Mol. Life Sci. , vol.66 , pp. 1419-1433
    • Shukla, A.1    Chaurasia, P.2    Bhaumik, S.R.3
  • 10
    • 77950462621 scopus 로고    scopus 로고
    • Mixed lineage leukemia: histone H3 lysine 4 methyltransferases from yeast to human
    • Malik S, Bhaumik SR. 2010. Mixed lineage leukemia: histone H3 lysine 4 methyltransferases from yeast to human. FEBS J. 277:1805-1821.
    • (2010) FEBS J. , vol.277 , pp. 1805-1821
    • Malik, S.1    Bhaumik, S.R.2
  • 12
    • 33646158501 scopus 로고    scopus 로고
    • Natural antisense transcripts: sound or silence? Physiol
    • Werner A, Berdal A. 2005. Natural antisense transcripts: sound or silence? Physiol. Genomics 23:125-131.
    • (2005) Genomics , vol.23 , pp. 125-131
    • Werner, A.1    Berdal, A.2
  • 13
    • 0038581890 scopus 로고    scopus 로고
    • Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease
    • Tufarelli C, Stanley JA, Garrick D, Sharpe JA, Ayyub H, Wood WG, Higgs DR. 2003. Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease. Nat. Genet. 34:157-165.
    • (2003) Nat. Genet. , vol.34 , pp. 157-165
    • Tufarelli, C.1    Stanley, J.A.2    Garrick, D.3    Sharpe, J.A.4    Ayyub, H.5    Wood, W.G.6    Higgs, D.R.7
  • 14
    • 38949194937 scopus 로고    scopus 로고
    • Crucial role of antisense transcription across the Xist promoter in Tsix-mediated Xist chromatin modification
    • Ohhata T, Hoki Y, Sasaki H, Sado T. 2008. Crucial role of antisense transcription across the Xist promoter in Tsix-mediated Xist chromatin modification. Development 135:227-235.
    • (2008) Development , vol.135 , pp. 227-235
    • Ohhata, T.1    Hoki, Y.2    Sasaki, H.3    Sado, T.4
  • 15
    • 23044437498 scopus 로고    scopus 로고
    • RNA meets chromatin
    • Bernstein E, Allis CD. 2005. RNA meets chromatin. Genes Dev. 19: 1635-1655.
    • (2005) Genes Dev. , vol.19 , pp. 1635-1655
    • Bernstein, E.1    Allis, C.D.2
  • 16
    • 33645231102 scopus 로고    scopus 로고
    • Mouse polycomb proteins bind differentially to methylated histone H3 and RNA and are enriched in facultative heterochromatin
    • Bernstein E, Duncan EM, Masui O, Gil J, Heard E, Allis CD. 2006. Mouse polycomb proteins bind differentially to methylated histone H3 and RNA and are enriched in facultative heterochromatin. Mol. Cell. Biol. 26:2560-2569.
    • (2006) Mol. Cell. Biol. , vol.26 , pp. 2560-2569
    • Bernstein, E.1    Duncan, E.M.2    Masui, O.3    Gil, J.4    Heard, E.5    Allis, C.D.6
  • 17
    • 67849105060 scopus 로고    scopus 로고
    • Naturally occurring antisense RNA: function and mechanisms of action
    • Werner A, Sayer JA. 2009. Naturally occurring antisense RNA: function and mechanisms of action. Curr. Opin. Nephrol. Hypertens. 18:343-349.
    • (2009) Curr. Opin. Nephrol. Hypertens. , vol.18 , pp. 343-349
    • Werner, A.1    Sayer, J.A.2
  • 18
    • 33751536642 scopus 로고    scopus 로고
    • Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms
    • Lapidot M, Pilpel Y. 2006. Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms. EMBO Rep. 7:1216-1222.
    • (2006) EMBO Rep. , vol.7 , pp. 1216-1222
    • Lapidot, M.1    Pilpel, Y.2
  • 20
    • 25444523778 scopus 로고    scopus 로고
    • Natural antisense transcripts
    • Werner A. 2005. Natural antisense transcripts. RNA Biol. 2:53-62.
    • (2005) RNA Biol. , vol.2 , pp. 53-62
    • Werner, A.1
  • 21
    • 0040175431 scopus 로고    scopus 로고
    • Do natural antisense transcripts make sense in eukaryotes?
    • Vanhee-Brossollet C, Vaquero C. 1998. Do natural antisense transcripts make sense in eukaryotes? Gene 211:1-9.
    • (1998) Gene , vol.211 , pp. 1-9
    • Vanhee-Brossollet, C.1    Vaquero, C.2
  • 22
    • 26944454054 scopus 로고    scopus 로고
    • Evidence for a preferential targeting of 3'-UTRs by cis-encoded natural antisense transcripts
    • Sun M, Hurst LD, Carmichael GG, Chen J. 2005. Evidence for a preferential targeting of 3'-UTRs by cis-encoded natural antisense transcripts. Nucleic Acids Res. 33:5533-5543.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 5533-5543
    • Sun, M.1    Hurst, L.D.2    Carmichael, G.G.3    Chen, J.4
  • 23
    • 24644448635 scopus 로고    scopus 로고
    • Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana
    • doi:10.1186/gb-2005-6-4-r30
    • Wang XJ, Gaasterland T, Chua NH. 2005. Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana. Genome Biol. 6:R30. doi:10.1186/gb-2005-6-4-r30.
    • (2005) Genome Biol. , vol.6
    • Wang, X.J.1    Gaasterland, T.2    Chua, N.H.3
  • 24
    • 80053569699 scopus 로고    scopus 로고
    • Pervasive transcription: lessons from yeast
    • Tisseur M, Kwapisz M, Morillon A. 2011. Pervasive transcription: lessons from yeast. Biochimie 93:1889-18896.
    • (2011) Biochimie , vol.93 , pp. 1889-18896
    • Tisseur, M.1    Kwapisz, M.2    Morillon, A.3
  • 25
    • 69249235745 scopus 로고    scopus 로고
    • Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome
    • Lee JT. 2009. Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome. Genes Dev. 23:1831-1842.
    • (2009) Genes Dev. , vol.23 , pp. 1831-1842
    • Lee, J.T.1
  • 26
    • 77958472025 scopus 로고    scopus 로고
    • The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation
    • Tian D, Sun S, Lee JT. 2010. The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation. Cell 143:390-403.
    • (2010) Cell , vol.143 , pp. 390-403
    • Tian, D.1    Sun, S.2    Lee, J.T.3
  • 27
    • 33750814968 scopus 로고    scopus 로고
    • Antisense transcription controls cell fate in Saccharomyces cerevisiae
    • Hongay CF, Grisafi PL, Galitski T, Fink GR. 2006. Antisense transcription controls cell fate in Saccharomyces cerevisiae. Cell 127:735-745.
    • (2006) Cell , vol.127 , pp. 735-745
    • Hongay, C.F.1    Grisafi, P.L.2    Galitski, T.3    Fink, G.R.4
  • 28
    • 2942560254 scopus 로고    scopus 로고
    • Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene
    • Martens JA, Laprade L, Winston F. 2004. Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene. Nature 429: 571-574.
    • (2004) Nature , vol.429 , pp. 571-574
    • Martens, J.A.1    Laprade, L.2    Winston, F.3
  • 29
    • 27744533201 scopus 로고    scopus 로고
    • Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae
    • Martens JA, Wu PY, Winston F. 2005. Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae. Genes Dev. 19:2695-26704.
    • (2005) Genes Dev. , vol.19 , pp. 2695-26704
    • Martens, J.A.1    Wu, P.Y.2    Winston, F.3
  • 30
    • 36048951040 scopus 로고    scopus 로고
    • Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S
    • Camblong J, Iglesias N, Fickentscher C, Dieppois G, Stutz F. 2007. Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae. Cell 131:706-717.
    • (2007) cerevisiae. Cell , vol.131 , pp. 706-717
    • Camblong, J.1    Iglesias, N.2    Fickentscher, C.3    Dieppois, G.4    Stutz, F.5
  • 31
    • 56849093493 scopus 로고    scopus 로고
    • A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster
    • Houseley J, Rubbi L, Grunstein M, Tollervey D, Vogelauer M. 2008. A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster. Mol. Cell 32:685-695.
    • (2008) Mol. Cell , vol.32 , pp. 685-695
    • Houseley, J.1    Rubbi, L.2    Grunstein, M.3    Tollervey, D.4    Vogelauer, M.5
  • 32
    • 67649550089 scopus 로고    scopus 로고
    • H3 lysine 4 di-and tri-methylation deposited by cryptic transcription attenuates promoter activation
    • Pinskaya M, Gourvennec S, Morillon A. 2009. H3 lysine 4 di-and tri-methylation deposited by cryptic transcription attenuates promoter activation. EMBO J. 28:1697-1707.
    • (2009) EMBO J. , vol.28 , pp. 1697-1707
    • Pinskaya, M.1    Gourvennec, S.2    Morillon, A.3
  • 33
    • 34948831152 scopus 로고    scopus 로고
    • Noncoding but nonexpendable: transcriptional regulation by large noncoding RNA in eukaryotes
    • Yazgan O, Krebs JE. 2007. Noncoding but nonexpendable: transcriptional regulation by large noncoding RNA in eukaryotes. Biochem. Cell Biol. 85:484-496.
    • (2007) Biochem. Cell Biol. , vol.85 , pp. 484-496
    • Yazgan, O.1    Krebs, J.E.2
  • 38
    • 24944562066 scopus 로고    scopus 로고
    • Sense and antisense transcripts of the apolipoprotein E gene in normal and ApoE knockout mice, their expression after spinal cord injury and corresponding human transcripts
    • Seitz A, Gourevitch D, Zhang XM, Clark L, Chen P, Kragol M, Levenkova N, Rux J, Samulewicz S, Heber-Katz E. 2005. Sense and antisense transcripts of the apolipoprotein E gene in normal and ApoE knockout mice, their expression after spinal cord injury and corresponding human transcripts. Hum. Mol. Genet. 14:2661-2670.
    • (2005) Hum. Mol. Genet. , vol.14 , pp. 2661-2670
    • Seitz, A.1    Gourevitch, D.2    Zhang, X.M.3    Clark, L.4    Chen, P.5    Kragol, M.6    Levenkova, N.7    Rux, J.8    Samulewicz, S.9    Heber-Katz, E.10
  • 39
    • 0031737516 scopus 로고    scopus 로고
    • Antisense RNA: function and fate of duplex RNA in cells of higher eukaryotes
    • Kumar M, Carmichael GG. 1998. Antisense RNA: function and fate of duplex RNA in cells of higher eukaryotes. Microbiol. Mol. Biol. Rev. 62:1415-1434.
    • (1998) Microbiol. Mol. Biol. Rev. , vol.62 , pp. 1415-1434
    • Kumar, M.1    Carmichael, G.G.2
  • 41
    • 68849101462 scopus 로고    scopus 로고
    • Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues
    • doi:10.1186/1471-2164-10-324
    • Grigoriadis A, Oliver GR, Tanney A, Kendrick H, Smalley MJ, Jat P, Neville AM. 2009. Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues. BMC Genomics 10: 324. doi:10.1186/1471-2164-10-324.
    • (2009) BMC Genomics , vol.10 , pp. 324
    • Grigoriadis, A.1    Oliver, G.R.2    Tanney, A.3    Kendrick, H.4    Smalley, M.J.5    Jat, P.6    Neville, A.M.7
  • 42
    • 74449086309 scopus 로고    scopus 로고
    • Progress in therapeutic antisense applications for neuromuscular disorders
    • Aartsma-Rus A, van Ommen GJ. 2010. Progress in therapeutic antisense applications for neuromuscular disorders. Eur. J. Hum. Genet. 18:146-153.
    • (2010) Eur. J. Hum. Genet. , vol.18 , pp. 146-153
    • Aartsma-Rus, A.1    van Ommen, G.J.2
  • 43
    • 22744434640 scopus 로고    scopus 로고
    • Antisense oligonucleotides as therapeutics for hyperlipidaemias
    • Crooke RM. 2005. Antisense oligonucleotides as therapeutics for hyperlipidaemias. Expert Opin. Biol. Ther. 5:907-917.
    • (2005) Expert Opin. Biol. Ther. , vol.5 , pp. 907-917
    • Crooke, R.M.1
  • 44
    • 12844269788 scopus 로고    scopus 로고
    • Role of endogenous antisense RNA in cardiac gene regulation
    • Luther HP. 2005. Role of endogenous antisense RNA in cardiac gene regulation. J. Mol. Med. (Berl.) 83:26-32.
    • (2005) J. Mol. Med. (Berl.) , vol.83 , pp. 26-32
    • Luther, H.P.1
  • 45
    • 33645536111 scopus 로고    scopus 로고
    • The future of antisense oligonucleotides in the treatment of respiratory diseases
    • Ulanova M, Schreiber AD, Befus AD. 2006. The future of antisense oligonucleotides in the treatment of respiratory diseases. BioDrugs 20:1-11.
    • (2006) BioDrugs , vol.20 , pp. 1-11
    • Ulanova, M.1    Schreiber, A.D.2    Befus, A.D.3
  • 46
    • 30944443047 scopus 로고    scopus 로고
    • Antisense-and RNA interference-based therapeutic strategies in allergy
    • Popescu FD. 2005. Antisense-and RNA interference-based therapeutic strategies in allergy. J. Cell. Mol. Med. 9:840-853.
    • (2005) J. Cell. Mol. Med. , vol.9 , pp. 840-853
    • Popescu, F.D.1
  • 48
    • 33646248115 scopus 로고    scopus 로고
    • Ubp8p, a histone deubiquitinase whose association with SAGA is mediated by Sgf11p, differentially regulates lysine 4 methylation of histone H3 in vivo
    • Shukla A, Stanojevic N, Duan Z, Sen P, Bhaumik SR. 2006. Ubp8p, a histone deubiquitinase whose association with SAGA is mediated by Sgf11p, differentially regulates lysine 4 methylation of histone H3 in vivo. Mol. Cell. Biol. 26:3339-3352.
    • (2006) Mol. Cell. Biol. , vol.26 , pp. 3339-3352
    • Shukla, A.1    Stanojevic, N.2    Duan, Z.3    Sen, P.4    Bhaumik, S.R.5
  • 49
    • 72149121113 scopus 로고    scopus 로고
    • The 19S proteasome subcomplex establishes a specific protein interaction network at the promoter for stimulated transcriptional initiation in vivo
    • Malik S, Shukla A, Sen P, Bhaumik SR. 2009. The 19S proteasome subcomplex establishes a specific protein interaction network at the promoter for stimulated transcriptional initiation in vivo. J. Biol. Chem. 284:35714-35724.
    • (2009) J. Biol. Chem. , vol.284 , pp. 35714-35724
    • Malik, S.1    Shukla, A.2    Sen, P.3    Bhaumik, S.R.4
  • 50
    • 77950513763 scopus 로고    scopus 로고
    • Rad26p, a transcription-coupled repair factor, is recruited to the site of DNA lesion in an elongating RNA polymerase II-dependent manner in vivo
    • Malik S, Chaurasia P, Lahudkar S, Durairaj G, Shukla A, Bhaumik SR. 2010. Rad26p, a transcription-coupled repair factor, is recruited to the site of DNA lesion in an elongating RNA polymerase II-dependent manner in vivo. Nucleic Acids Res. 38:1461-1477.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 1461-1477
    • Malik, S.1    Chaurasia, P.2    Lahudkar, S.3    Durairaj, G.4    Shukla, A.5    Bhaumik, S.R.6
  • 51
    • 79953673887 scopus 로고    scopus 로고
    • The mRNA cap-binding complex stimulates the formation of pre-initiation complex at the promoter via its interaction with Mot1p in vivo
    • Lahudkar S, Shukla A, Bajwa P, Durairaj G, Stanojevic N, Bhaumik SR. 2011. The mRNA cap-binding complex stimulates the formation of pre-initiation complex at the promoter via its interaction with Mot1p in vivo. Nucleic Acids Res. 39:2188-2209.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 2188-2209
    • Lahudkar, S.1    Shukla, A.2    Bajwa, P.3    Durairaj, G.4    Stanojevic, N.5    Bhaumik, S.R.6
  • 52
    • 84858430267 scopus 로고    scopus 로고
    • The 19S proteasome subcomplex promotes the targeting of NuA4 HAT to the promoters of ribosomal protein genes to facilitate the recruitment of TFIID for transcriptional initiation in vivo
    • Uprety B, Lahudkar S, Malik S, Bhaumik SR. 2012. The 19S proteasome subcomplex promotes the targeting of NuA4 HAT to the promoters of ribosomal protein genes to facilitate the recruitment of TFIID for transcriptional initiation in vivo. Nucleic Acids Res. 40: 1969 -1983.
    • (2012) Nucleic Acids Res. , vol.40
    • Uprety, B.1    Lahudkar, S.2    Malik, S.3    Bhaumik, S.R.4
  • 53
    • 84860380222 scopus 로고    scopus 로고
    • Rad26p regulates the occupancy of histone H2A-H2B dimer at the active genes in vivo
    • Malik S, Chaurasia P, Lahudkar S, Uprety B, Bhaumik SR. 2012. Rad26p regulates the occupancy of histone H2A-H2B dimer at the active genes in vivo. Nucleic Acids Res. 40:3348-3363.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 3348-3363
    • Malik, S.1    Chaurasia, P.2    Lahudkar, S.3    Uprety, B.4    Bhaumik, S.R.5
  • 54
    • 0031820288 scopus 로고    scopus 로고
    • Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
    • Longtine MS, McKenzie A, III, Demarini DJ, Shah NG, Wach A, Brachat A, Philippsen P, Pingle JR. 1998. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast. 14:953-961.
    • (1998) Yeast. , vol.14 , pp. 953-961
    • Longtine, M.S.1    McKenzie, A.2    Demarini, D.J.3    Shah, N.G.4    Wach, A.5    Brachat, A.6    Philippsen, P.7    Pingle, J.R.8
  • 56
    • 0033542484 scopus 로고    scopus 로고
    • Enhancement of TBP binding by activators and general transcription factors
    • Li XY, Virbasius A, Zhu X, Green MR. 1999. Enhancement of TBP binding by activators and general transcription factors. Nature 399:605-609.
    • (1999) Nature , vol.399 , pp. 605-609
    • Li, X.Y.1    Virbasius, A.2    Zhu, X.3    Green, M.R.4
  • 57
    • 0026741634 scopus 로고
    • The TATA-binding protein is required for transcription by all three nuclear RNA polymerases in yeast cells
    • Cormack BP, Struhl K. 1992. The TATA-binding protein is required for transcription by all three nuclear RNA polymerases in yeast cells. Cell 69:685-696.
    • (1992) Cell , vol.69 , pp. 685-696
    • Cormack, B.P.1    Struhl, K.2
  • 58
    • 0029076822 scopus 로고
    • General requirement for RNA polymerase II holoenzymes in vivo
    • Thompson CM, Young RA. 1995. General requirement for RNA polymerase II holoenzymes in vivo. Proc. Natl. Acad. Sci. 92:4587-4590.
    • (1995) Proc. Natl. Acad. Sci. , vol.92 , pp. 4587-4590
    • Thompson, C.M.1    Young, R.A.2
  • 59
    • 0035971226 scopus 로고    scopus 로고
    • Evidence that proteolysis of Gal4 cannotexplain the transcriptional effects of proteasome ATPase mutations
    • Russell SJ, Johnston SA. 2001. Evidence that proteolysis of Gal4 cannotexplain the transcriptional effects of proteasome ATPase mutations. J. Biol. Chem. 276:9825-9831.
    • (2001) J. Biol. Chem. , vol.276 , pp. 9825-9831
    • Russell, S.J.1    Johnston, S.A.2
  • 60
    • 0035423749 scopus 로고    scopus 로고
    • SAGA is an essential in vivo target of the yeast acidic activator Gal4p
    • Bhaumik SR, Green MR. 2001. SAGA is an essential in vivo target of the yeast acidic activator Gal4p. Genes Dev. 15:1935-1945.
    • (2001) Genes Dev. , vol.15 , pp. 1935-1945
    • Bhaumik, S.R.1    Green, M.R.2
  • 61
    • 1042289670 scopus 로고    scopus 로고
    • In vivo target of a transcriptional activator revealed by fluorescence resonance energy transfer
    • Bhaumik SR, Raha T, Aiello DP, Green MR. 2004. In vivo target of a transcriptional activator revealed by fluorescence resonance energy transfer. Genes Dev. 18:333-343.
    • (2004) Genes Dev. , vol.18 , pp. 333-343
    • Bhaumik, S.R.1    Raha, T.2    Aiello, D.P.3    Green, M.R.4
  • 62
    • 0347381288 scopus 로고    scopus 로고
    • Interaction of Gal4p with components of transcription machinery in vivo
    • Bhaumik SR, Green MR. 2003. Interaction of Gal4p with components of transcription machinery in vivo. Methods Enzymol. 370:445-454.
    • (2003) Methods Enzymol. , vol.370 , pp. 445-454
    • Bhaumik, S.R.1    Green, M.R.2
  • 63
    • 0036838096 scopus 로고    scopus 로고
    • Differential requirement of SAGA components for recruitment of TATA-box-binding protein to promoters in vivo
    • Bhaumik SR, Green MR. 2002. Differential requirement of SAGA components for recruitment of TATA-box-binding protein to promoters in vivo. Mol. Cell. Biol. 22:7365-7371.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 7365-7371
    • Bhaumik, S.R.1    Green, M.R.2
  • 65
    • 0026021355 scopus 로고
    • A functional interaction between the C-terminal domain of RNA polymerase II and the negative regulator SIN1
    • Peterson CL, Kruger W, Herskowitz I. 1991. A functional interaction between the C-terminal domain of RNA polymerase II and the negative regulator SIN1. Cell 64:1135-1143.
    • (1991) Cell , vol.64 , pp. 1135-1143
    • Peterson, C.L.1    Kruger, W.2    Herskowitz, I.3
  • 67
    • 80052404590 scopus 로고    scopus 로고
    • Transcriptional interference and gene orientation in yeast: noncoding RNA connections
    • Gullerova M, Proudfoot NJ. 2010. Transcriptional interference and gene orientation in yeast: noncoding RNA connections. Cold Spring Harbor Symp. Quant. Biol. 75:299-311.
    • (2010) Cold Spring Harbor Symp. Quant. Biol. , vol.75 , pp. 299-311
    • Gullerova, M.1    Proudfoot, N.J.2
  • 68
    • 0023493883 scopus 로고
    • A model fungal gene regulatory mechanism: the GAL genes of Saccharomyces cerevisiae
    • Johnston M. 1987. A model fungal gene regulatory mechanism: the GAL genes of Saccharomyces cerevisiae. Microbiol. Rev. 51:458-476.
    • (1987) Microbiol. Rev. , vol.51 , pp. 458-476
    • Johnston, M.1
  • 70
    • 0029813252 scopus 로고    scopus 로고
    • Two different repressors collaborate to restrict expression of the yeast glucose transporter genes HXT2 and HXT4 to low levels of glucose
    • Ozcan S, Johnston M. 1996. Two different repressors collaborate to restrict expression of the yeast glucose transporter genes HXT2 and HXT4 to low levels of glucose. Mol. Cell. Biol. 16:5536-5545.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 5536-5545
    • Ozcan, S.1    Johnston, M.2
  • 71
    • 50949127726 scopus 로고    scopus 로고
    • Metabolic control of transcription: paradigms and lessons from Saccharomyces cerevisiae
    • Campbell RN, Leverentz MK, Ryan LA, Reece RJ. 2008. Metabolic control of transcription: paradigms and lessons from Saccharomyces cerevisiae. Biochem. J. 414:177-187.
    • (2008) Biochem. J. , vol.414 , pp. 177-187
    • Campbell, R.N.1    Leverentz, M.K.2    Ryan, L.A.3    Reece, R.J.4
  • 72
    • 0031172707 scopus 로고    scopus 로고
    • Homopurine and homopyrimidine strands complementary in parallel orientation form an antiparallel duplex at neutral pH with A-C, G-T, and T-C mismatched base pairs
    • Bhaumik SR, Chary KV, Govil G, Liu K, Miles HT. 1997. Homopurine and homopyrimidine strands complementary in parallel orientation form an antiparallel duplex at neutral pH with A-C, G-T, and T-C mismatched base pairs. Biopolymers 41:773-784.
    • (1997) Biopolymers , vol.41 , pp. 773-784
    • Bhaumik, S.R.1    Chary, K.V.2    Govil, G.3    Liu, K.4    Miles, H.T.5
  • 74
    • 33748265526 scopus 로고    scopus 로고
    • Stability of DNA duplexes containing GG, CC, AA, and TT mismatches
    • Tikhomirova A, Beletskaya IV, Chalikian TV. 2006. Stability of DNA duplexes containing GG, CC, AA, and TT mismatches. Biochemistry 45:10563-10571.
    • (2006) Biochemistry , vol.45 , pp. 10563-10571
    • Tikhomirova, A.1    Beletskaya, I.V.2    Chalikian, T.V.3
  • 75
    • 0027053974 scopus 로고
    • Base pairing geometry in GA mismatches depends entirely on the neighboring sequence
    • Cheng JW, Chou SH, Reid BR. 1992. Base pairing geometry in GA mismatches depends entirely on the neighboring sequence. J. Mol. Biol. 228:1037-1041.
    • (1992) J. Mol. Biol. , vol.228 , pp. 1037-1041
    • Cheng, J.W.1    Chou, S.H.2    Reid, B.R.3
  • 77
    • 84861892611 scopus 로고    scopus 로고
    • A rule of seven in Watson-Crick basepairing of mismatched sequences
    • Cisse II, Kim H, Ha T. 2012. A rule of seven in Watson-Crick basepairing of mismatched sequences. Nat. Struct. Mol. Biol. 19:623-627.
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 623-627
    • Cisse, I.I.1    Kim, H.2    Ha, T.3
  • 80
    • 0030980019 scopus 로고    scopus 로고
    • Structural analysis of Z-Z DNA junctions with A:A and T:T mismatched base pairs by NMR
    • Yang XL, Wang AH. 1997. Structural analysis of Z-Z DNA junctions with A:A and T:T mismatched base pairs by NMR. Biochemistry 36: 4258-4267.
    • (1997) Biochemistry , vol.36 , pp. 4258-4267
    • Yang, X.L.1    Wang, A.H.2
  • 81
    • 33646254121 scopus 로고    scopus 로고
    • Dynamic conformational states of DNA containing T · T or BrdU · T mispaired bases: wobble H-bond pairing versus cross-strand inter-atomic contacts
    • Gantchev TG, Cecchini S, Hunting DJ. 2005. Dynamic conformational states of DNA containing T · T or BrdU · T mispaired bases: wobble H-bond pairing versus cross-strand inter-atomic contacts. J. Mol. Model. 11:141-159.
    • (2005) J. Mol. Model. , vol.11 , pp. 141-159
    • Gantchev, T.G.1    Cecchini, S.2    Hunting, D.J.3
  • 82
    • 0026737976 scopus 로고
    • Kinetics and energetics of base-pair opening in 5=-d(CGCGAATTCGCG)-3' and a substituted dodecamer containing G · T mismatches
    • Moe JG, Russu IM. 1992. Kinetics and energetics of base-pair opening in 5=-d(CGCGAATTCGCG)-3' and a substituted dodecamer containing G · T mismatches. Biochemistry 31:8421-8428.
    • (1992) Biochemistry , vol.31 , pp. 8421-8428
    • Moe, J.G.1    Russu, I.M.2
  • 85
    • 35148882905 scopus 로고    scopus 로고
    • The Swi/Snf complex is important for histone eviction during transcriptional activation and RNA polymerase II elongation in vivo
    • Schwabish MA, Struhl K. 2007. The Swi/Snf complex is important for histone eviction during transcriptional activation and RNA polymerase II elongation in vivo. Mol. Cell. Biol. 27:6987-6995.
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 6987-6995
    • Schwabish, M.A.1    Struhl, K.2
  • 87
    • 83255164884 scopus 로고    scopus 로고
    • Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution
    • Rhee HS, Pugh BF. 2011. Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution. Cell 147:1408-1419.
    • (2011) Cell , vol.147 , pp. 1408-1419
    • Rhee, H.S.1    Pugh, B.F.2
  • 88
    • 84858165145 scopus 로고    scopus 로고
    • Genome-wide structure and organization of eukaryotic pre-initiation complexes
    • Rhee HS, Pugh BF. 2012. Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature 483:295-301.
    • (2012) Nature , vol.483 , pp. 295-301
    • Rhee, H.S.1    Pugh, B.F.2
  • 90
    • 60349122111 scopus 로고    scopus 로고
    • A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome
    • Venters BJ, Pugh BF. 2009. A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome. Genome Res. 19:360-371.
    • (2009) Genome Res. , vol.19 , pp. 360-371
    • Venters, B.J.1    Pugh, B.F.2
  • 91
    • 84859335229 scopus 로고    scopus 로고
    • A pre-initiation complex at the 3'-end of genes drives antisense transcription independent of divergent sense transcription
    • Murray SC, Serra Barros A, Brown DA, Dudek P, Ayling J, Mellor J. 2012. A pre-initiation complex at the 3'-end of genes drives antisense transcription independent of divergent sense transcription. Nucleic Acids Res. 40:2432-2444.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 2432-2444
    • Murray, S.C.1    Serra Barros, A.2    Brown, D.A.3    Dudek, P.4    Ayling, J.5    Mellor, J.6
  • 93
    • 27744495040 scopus 로고    scopus 로고
    • A putative stimulatory role for activator turnover in gene expression
    • Lipford JR, Smith GT, Chi Y, Deshaies RJ. 2005. A putative stimulatory role for activator turnover in gene expression. Nature 438:113-116.
    • (2005) Nature , vol.438 , pp. 113-116
    • Lipford, J.R.1    Smith, G.T.2    Chi, Y.3    Deshaies, R.J.4
  • 94
    • 0034686001 scopus 로고    scopus 로고
    • Distinct classes of yeast promoters revealed by differential TAF recruitment
    • Li XY, Bhaumik SR, Green MR. 2000. Distinct classes of yeast promoters revealed by differential TAF recruitment. Science 288:1242-1244.
    • (2000) Science , vol.288 , pp. 1242-1244
    • Li, X.Y.1    Bhaumik, S.R.2    Green, M.R.3
  • 95
    • 0029846871 scopus 로고    scopus 로고
    • The general transcription factors of RNA polymerase II
    • Orphanides G, Lagrange T, Reinberg D. 1996. The general transcription factors of RNA polymerase II. Genes Dev. 10:2657-2683.
    • (1996) Genes Dev. , vol.10 , pp. 2657-2683
    • Orphanides, G.1    Lagrange, T.2    Reinberg, D.3
  • 97
    • 0032504245 scopus 로고    scopus 로고
    • The N-terminal region of yeast TFIIB contains two adjacent functional domains involved in stable RNA polymerase II binding and transcription start site selection
    • Pardee TS, Bangur CS, Ponticelli AS. 1998. The N-terminal region of yeast TFIIB contains two adjacent functional domains involved in stable RNA polymerase II binding and transcription start site selection. J. Biol. Chem. 273:17859-17864.
    • (1998) J. Biol. Chem. , vol.273 , pp. 17859-17864
    • Pardee, T.S.1    Bangur, C.S.2    Ponticelli, A.S.3
  • 98
    • 23444439791 scopus 로고
    • RNA polymerase II initiation factor interactions and transcription start site selection
    • Li Y, Flanagan PM, Tschochner H, Kornberg RD. 1994. RNA polymerase II initiation factor interactions and transcription start site selection. Science 263:805-807.
    • (1994) Science , vol.263 , pp. 805-807
    • Li, Y.1    Flanagan, P.M.2    Tschochner, H.3    Kornberg, R.D.4
  • 99
    • 18844451820 scopus 로고    scopus 로고
    • Mediator and the mechanism of transcriptional activation
    • Kornberg RD. 2005. Mediator and the mechanism of transcriptional activation. Trends Biochem. Sci. 30:235-239.
    • (2005) Trends Biochem. Sci. , vol.30 , pp. 235-239
    • Kornberg, R.D.1
  • 100
    • 0033786937 scopus 로고    scopus 로고
    • Mediator of transcriptional regulation
    • Myers LC, Kornberg RD. 2000. Mediator of transcriptional regulation. Annu. Rev. Biochem. 69:729-749.
    • (2000) Annu. Rev. Biochem. , vol.69 , pp. 729-749
    • Myers, L.C.1    Kornberg, R.D.2
  • 101
    • 0035834772 scopus 로고    scopus 로고
    • The structural and functional organization of the yeast mediator complex
    • Kang JS, Kim SH, Hwang MS, Han SJ, Lee YC, Kim YJ. 2001. The structural and functional organization of the yeast mediator complex. J. Biol. Chem. 276:42003-42010.
    • (2001) J. Biol. Chem. , vol.276 , pp. 42003-42010
    • Kang, J.S.1    Kim, S.H.2    Hwang, M.S.3    Han, S.J.4    Lee, Y.C.5    Kim, Y.J.6
  • 102
    • 0032059891 scopus 로고    scopus 로고
    • An activator target in the RNA polymerase II holoenzyme
    • Koh SS, Ansari AZ, Ptashne M, Young RA. 1998. An activator target in the RNA polymerase II holoenzyme. Mol. Cell. 1:895-904.
    • (1998) Mol. Cell. , vol.1 , pp. 895-904
    • Koh, S.S.1    Ansari, A.Z.2    Ptashne, M.3    Young, R.A.4
  • 103
    • 78651397147 scopus 로고    scopus 로고
    • Large non-coding RNAs: missing links in cancer? Hum
    • Huarte M, Rinn JL. 2010. Large non-coding RNAs: missing links in cancer? Hum. Mol. Genet. 19:R152-R161.
    • (2010) Mol. Genet. , vol.19
    • Huarte, M.1    Rinn, J.L.2
  • 105
    • 80051679799 scopus 로고    scopus 로고
    • Long noncoding RNA, polycomb, and the ghosts haunting INK4b-ARF-INK4a expression
    • Aguilo F, Zhou MM, Walsh MJ. 2011. Long noncoding RNA, polycomb, and the ghosts haunting INK4b-ARF-INK4a expression. Cancer Res. 71:5365-5369.
    • (2011) Cancer Res. , vol.71 , pp. 5365-5369
    • Aguilo, F.1    Zhou, M.M.2    Walsh, M.J.3
  • 106
    • 84857066786 scopus 로고    scopus 로고
    • Modular regulatory principles of large non-coding RNAs
    • Guttman M, Rinn JL. 2012. Modular regulatory principles of large non-coding RNAs. Nature 482:339-346.
    • (2012) Nature , vol.482 , pp. 339-346
    • Guttman, M.1    Rinn, J.L.2
  • 107
    • 0034686037 scopus 로고    scopus 로고
    • TAF-Containing andTAF-independent forms of transcriptionally active TBP in vivo
    • Kuras L, Kosa P, Mencia M, Struhl K. 2000. TAF-Containing andTAF-independent forms of transcriptionally active TBP in vivo. Science 288:1244-1248.
    • (2000) Science , vol.288 , pp. 1244-1248
    • Kuras, L.1    Kosa, P.2    Mencia, M.3    Struhl, K.4
  • 108
    • 33845783756 scopus 로고    scopus 로고
    • Yeast TFIID serves as a coactivator for Rap1p by direct protein-protein interaction
    • Garbett KA, Tripathi MK, Cencki B, Layer JH, Weil PA. 2007. Yeast TFIID serves as a coactivator for Rap1p by direct protein-protein interaction. Mol. Cell. Biol. 27:297-311.
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 297-311
    • Garbett, K.A.1    Tripathi, M.K.2    Cencki, B.3    Layer, J.H.4    Weil, P.A.5
  • 109
    • 77952087752 scopus 로고    scopus 로고
    • Direct transactivator-transcription factor IID (TFIID) contacts drive yeast ribosomal protein gene transcription
    • Layer JH, Miller SG, Weil PA. 2010. Direct transactivator-transcription factor IID (TFIID) contacts drive yeast ribosomal protein gene transcription. J. Biol. Chem. 285:15489-15499.
    • (2010) J. Biol. Chem. , vol.285 , pp. 15489-15499
    • Layer, J.H.1    Miller, S.G.2    Weil, P.A.3


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