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Volumn 84, Issue 9, 2013, Pages 1266-1271

Host genome, epigenome, and oral microbiome interactions: Toward personalized periodontal therapy

Author keywords

Epigenomics; Genome; Individualized medicine; Metagenome; Periodontal diseases; Pharmacogenetics

Indexed keywords

BACTERIUM; CLASSIFICATION; GENETIC EPIGENESIS; GENETICS; GENOTYPE ENVIRONMENT INTERACTION; HOST PATHOGEN INTERACTION; HUMAN; HUMAN GENOME; METHODOLOGY; MICROBIOLOGY; MICROFLORA; MOUTH; PERIODONTAL DISEASE; PERSONALIZED MEDICINE; PHYSIOLOGY; REVIEW;

EID: 84883430688     PISSN: 00223492     EISSN: None     Source Type: Journal    
DOI: 10.1902/jop.2012.120531     Document Type: Review
Times cited : (19)

References (62)
  • 1
    • 78651276250 scopus 로고    scopus 로고
    • Periodontal genetics: A decade of genetic association studies mandates better study designs
    • Schäfer AS, Jepsen S, Loos BG. Periodontal genetics: A decade of genetic association studies mandates better study designs. J Clin Periodontol 2011;38:103-107.
    • (2011) J Clin Periodontol , vol.38 , pp. 103-107
    • Schäfer, A.S.1    Jepsen, S.2    Loos, B.G.3
  • 3
    • 49449101942 scopus 로고    scopus 로고
    • Mapping the pathogenesis of periodontitis: A new look
    • Kornman KS. Mapping the pathogenesis of periodontitis: A new look. J Periodontol 2008; 79(Suppl. 8)1560-1568.
    • (2008) J Periodontol , vol.79 , Issue.SUPPL. 8 , pp. 1560-1568
    • Kornman, K.S.1
  • 4
    • 84855358370 scopus 로고    scopus 로고
    • What do 'omic technologies have to offer periodontal clinical practice in the future?
    • Grant MM. What do 'omic technologies have to offer periodontal clinical practice in the future? J Periodontal Res 2012;47:2-14.
    • (2012) J Periodontal Res , vol.47 , pp. 2-14
    • Grant, M.M.1
  • 5
    • 84858433310 scopus 로고    scopus 로고
    • Personal omics profiling reveals dynamic molecular and medical phenotypes
    • Chen R, Mias GI, Li-Pook-Than J, et al. Personal omics profiling reveals dynamic molecular and medical phenotypes. Cell 2012;148:1293-1307.
    • (2012) Cell , vol.148 , pp. 1293-1307
    • Chen, R.1    Mias, G.I.2    Li-Pook-Than, J.3
  • 6
    • 46749126552 scopus 로고    scopus 로고
    • Genetic factors in drug metabolism
    • Belle DJ, Singh H. Genetic factors in drug metabolism. Am Fam Physician 2008;77:1553-1560.
    • (2008) Am Fam Physician , vol.77 , pp. 1553-1560
    • Belle, D.J.1    Singh, H.2
  • 7
    • 84865274780 scopus 로고    scopus 로고
    • Clinical application of pharmacogenomics
    • Ma JD, Lee KC, Kuo GM. Clinical application of pharmacogenomics. J Pharm Pract 2012;25:417-427.
    • (2012) J Pharm Pract , vol.25 , pp. 417-427
    • Ma, J.D.1    Lee, K.C.2    Kuo, G.M.3
  • 10
    • 84865263011 scopus 로고    scopus 로고
    • Clinical pharmacogenomics of warfarin and clopidogrel
    • Shin J. Clinical pharmacogenomics of warfarin and clopidogrel. J Pharm Pract 2012;25:428-438.
    • (2012) J Pharm Pract , vol.25 , pp. 428-438
    • Shin, J.1
  • 11
    • 72249101330 scopus 로고    scopus 로고
    • Herpesviral-bacterial interactions in periodontal diseases
    • Slots J. Herpesviral-bacterial interactions in periodontal diseases. Periodontol 2000 2010;52:117-140.
    • (2010) Periodontol 2000 , vol.52 , pp. 117-140
    • Slots, J.1
  • 13
    • 84862197046 scopus 로고    scopus 로고
    • Analyses of the microbial diversity across the human microbiome
    • Li K, Bihan M, Yooseph S, Methé BA. Analyses of the microbial diversity across the human microbiome. PLoS ONE 2012;7:e32118.
    • (2012) PLoS ONE , vol.7
    • Li, K.1    Bihan, M.2    Yooseph, S.3    Methé, B.A.4
  • 15
    • 74949134895 scopus 로고    scopus 로고
    • Defining the healthy "core microbiome" of oral microbial communities
    • Zaura E, Keijser BJ, Huse SM, Crielaard W. Defining the healthy "core microbiome" of oral microbial communities. BMC Microbiol 2009;9:259-271.
    • (2009) BMC Microbiol , vol.9 , pp. 259-271
    • Zaura, E.1    Keijser, B.J.2    Huse, S.M.3    Crielaard, W.4
  • 17
    • 84861845321 scopus 로고    scopus 로고
    • Deep sequencing of the oral microbiome reveals signatures of periodontal disease
    • Liu B, Faller LL, Klitgord N, et al. Deep sequencing of the oral microbiome reveals signatures of periodontal disease. PLoS ONE 2012;7:e37919.
    • (2012) PLoS ONE , vol.7
    • Liu, B.1    Faller, L.L.2    Klitgord, N.3
  • 18
    • 84859751086 scopus 로고    scopus 로고
    • Pyrosequencing reveals unique microbial signatures associated with healthy and failing dental implants
    • Kumar PS, Mason MR, Brooker MR, O'Brien K. Pyrosequencing reveals unique microbial signatures associated with healthy and failing dental implants. J Clin Periodontol 2012;39:425-433.
    • (2012) J Clin Periodontol , vol.39 , pp. 425-433
    • Kumar, P.S.1    Mason, M.R.2    Brooker, M.R.3    O'brien, K.4
  • 19
    • 49449084283 scopus 로고    scopus 로고
    • Rethinking periodontal inflammation
    • Offenbacher S, Barros SP, Beck JD. Rethinking periodontal inflammation. J Periodontol 2008; 79(Suppl. 8)1577-1584.
    • (2008) J Periodontol , vol.79 , Issue.SUPPL. 8 , pp. 1577-1584
    • Offenbacher, S.1    Barros, S.P.2    Beck, J.D.3
  • 20
    • 78449296237 scopus 로고    scopus 로고
    • Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
    • Benson AK, Kelly SA, Legge R, et al. Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors. Proc Natl Acad Sci U S A 2010;107:18933-18938.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 18933-18938
    • Benson, A.K.1    Kelly, S.A.2    Legge, R.3
  • 21
    • 80053462850 scopus 로고    scopus 로고
    • Metagenomics and personalized medicine
    • Virgin HW, Todd JA. Metagenomics and personalized medicine. Cell 2011;147:44-56.
    • (2011) Cell , vol.147 , pp. 44-56
    • Virgin, H.W.1    Todd, J.A.2
  • 22
    • 79952748287 scopus 로고    scopus 로고
    • Unravelling the effects of the environment and host genotype on the gut microbiome
    • Spor A, Koren O, Ley R. Unravelling the effects of the environment and host genotype on the gut microbiome. Nat Rev Microbiol 2011;9:279-290.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 279-290
    • Spor, A.1    Koren, O.2    Ley, R.3
  • 23
    • 84855554309 scopus 로고    scopus 로고
    • Microbial diversity and interactions in subgingival biofilm communities
    • Diaz PI. Microbial diversity and interactions in subgingival biofilm communities. Front Oral Biol 2012;15:17-40.
    • (2012) Front Oral Biol , vol.15 , pp. 17-40
    • Diaz, P.I.1
  • 24
    • 84883433672 scopus 로고    scopus 로고
    • Accessed May 15
    • NIH Human Microbiome Project. HMP project catalog. Available at: http://www.hmpdacc-resources.org/hmp-catalog/main.cgi?section=Home&page= Home.Accessed May 15, 2012.
    • (2012) HMP Project Catalog
  • 25
    • 84883413620 scopus 로고    scopus 로고
    • Accessed May 16
    • Integrated Microbial Genomes/Human Microbiome Project (IMG/HMP). HMP genomes and samples. Available at: http://www.hmpdacc-resources.org/ cgi-bin/imgm-hmp/main.cgi. Accessed May 16, 2012.
    • (2012) HMP Genomes and Samples
  • 26
    • 84883420957 scopus 로고    scopus 로고
    • Accessed on May 16
    • Human Oral Microbiome Database. Available at: http://www.homd.org. Accessed on May 16, 2012.
    • (2012)
  • 28
    • 77957333258 scopus 로고    scopus 로고
    • Induction of epigenetic alterations by dietary and other environmental factors
    • Mathers JC, Strathdee G, Relton CL. Induction of epigenetic alterations by dietary and other environmental factors. Adv Genet 2010;71:3-39.
    • (2010) Adv Genet , vol.71 , pp. 3-39
    • Mathers, J.C.1    Strathdee, G.2    Relton, C.L.3
  • 29
    • 49449115492 scopus 로고    scopus 로고
    • Epigenetic regulation of gene expression in the inflammatory response and relevance to common diseases
    • Wilson AG. Epigenetic regulation of gene expression in the inflammatory response and relevance to common diseases. J Periodontol 2008; 79(Suppl. 8):1514-1519.
    • (2008) J Periodontol , vol.79 , Issue.SUPPL. 8 , pp. 1514-1519
    • Wilson, A.G.1
  • 30
    • 84863621527 scopus 로고    scopus 로고
    • Cancer epigenetics: From mechanism to therapy
    • Dawson MA, Kouzarides T. Cancer epigenetics: From mechanism to therapy. Cell 2012;150:12-27.
    • (2012) Cell , vol.150 , pp. 12-27
    • Dawson, M.A.1    Kouzarides, T.2
  • 31
    • 84859994239 scopus 로고    scopus 로고
    • Epigenome and DNA methylation in oral squamous cell carcinoma
    • García MP, García-García A. Epigenome and DNA methylation in oral squamous cell carcinoma. Methods Mol Biol 2012;863:207-219.
    • (2012) Methods Mol Biol , vol.863 , pp. 207-219
    • García, M.P.1    García-García, A.2
  • 32
    • 70349284481 scopus 로고    scopus 로고
    • Epigenetics and periodontal disease: Future perspectives
    • Gomez RS, Dutra WO, Moreira PR. Epigenetics and periodontal disease: Future perspectives. Inflamm Res 2009;58:625-629.
    • (2009) Inflamm Res , vol.58 , pp. 625-629
    • Gomez, R.S.1    Dutra, W.O.2    Moreira, P.R.3
  • 33
    • 67649160614 scopus 로고    scopus 로고
    • Epigenetics: Connecting environment and genotype to phenotype and disease
    • Barros SP, Offenbacher S. Epigenetics: Connecting environment and genotype to phenotype and disease. J Dent Res 2009;88:400-408.
    • (2009) J Dent Res , vol.88 , pp. 400-408
    • Barros, S.P.1    Offenbacher, S.2
  • 34
    • 80054892294 scopus 로고    scopus 로고
    • Histone deacetylase inhibitors and periodontal bone loss
    • Cantley MD, Bartold PM, Marino V, et al. Histone deacetylase inhibitors and periodontal bone loss. J Periodontal Res 2011;46:697-703.
    • (2011) J Periodontal Res , vol.46 , pp. 697-703
    • Cantley, M.D.1    Bartold, P.M.2    Marino, V.3
  • 35
    • 0142216213 scopus 로고    scopus 로고
    • Methylation and demethylation in the regulation of genes, cells, and responses in the immune system
    • Fitzpatrick DR, Wilson CB. Methylation and demethylation in the regulation of genes, cells, and responses in the immune system. Clin Immunol 2003;109:37-45.
    • (2003) Clin Immunol , vol.109 , pp. 37-45
    • Fitzpatrick, D.R.1    Wilson, C.B.2
  • 36
    • 77956033148 scopus 로고    scopus 로고
    • Genespecific epigenetic regulation in serious infections with systemic inflammation
    • McCall CE, Yoza B, Liu T, El Gazzar M. Genespecific epigenetic regulation in serious infections with systemic inflammation. J Innate Immun 2010;2: 395-405.
    • (2010) J Innate Immun , vol.2 , pp. 395-405
    • McCall, C.E.1    Yoza, B.2    Liu, T.3    El Gazzar, M.4
  • 37
    • 17444382745 scopus 로고    scopus 로고
    • Epigenetic control in the immune response
    • Reiner SL. Epigenetic control in the immune response. Hum Mol Genet 2005;14 (Spec. No. 1):R41-R46.
    • (2005) Hum Mol Genet , vol.14 , Issue.SPEC. NO. 1
    • Reiner, S.L.1
  • 38
    • 79959526653 scopus 로고    scopus 로고
    • Methylation pattern of IFN-g and IL-10 genes in periodontal tissues
    • Viana MB, Cardoso FP, Diniz MG, et al. Methylation pattern of IFN-g and IL-10 genes in periodontal tissues. Immunobiology 2011;216:936-941.
    • (2011) Immunobiology , vol.216 , pp. 936-941
    • Viana, M.B.1    Cardoso, F.P.2    Diniz, M.G.3
  • 39
    • 80054061988 scopus 로고    scopus 로고
    • TLR2 and TLR4 gene promoter methylation status during chronic periodontitis
    • De Oliveira NF, Andia DC, Planello AC, et al. TLR2 and TLR4 gene promoter methylation status during chronic periodontitis. J Clin Periodontol 2011;38:975-983.
    • (2011) J Clin Periodontol , vol.38 , pp. 975-983
    • De Oliveira, N.F.1    Andia, D.C.2    Planello, A.C.3
  • 42
    • 84857363082 scopus 로고    scopus 로고
    • Epigenetic influences in the developmental origins of osteoporosis
    • Holroyd C, Harvey N, Dennison E, Cooper C. Epigenetic influences in the developmental origins of osteoporosis. Osteoporos Int 2012;23:401-410.
    • (2012) Osteoporos Int , vol.23 , pp. 401-410
    • Holroyd, C.1    Harvey, N.2    Dennison, E.3    Cooper, C.4
  • 43
    • 84883377176 scopus 로고    scopus 로고
    • Accessed on May 21
    • NIH Roadmap Epigenomics Mapping Consortium. Complete epigenomes. Available at: http:/www.roadmapepigenomics. org. Accessed on May 21, 2012.
    • (2012) Complete Epigenomes
  • 44
    • 0034130274 scopus 로고    scopus 로고
    • Interindividual and intra-articular variation of proinflammatory cytokines in patients with rheumatoid arthritis: Potential implications for treatment
    • Ulfgren AK, Gröndal L, Lindblad S, et al. Interindividual and intra-articular variation of proinflammatory cytokines in patients with rheumatoid arthritis: Potential implications for treatment. Ann Rheum Dis 2000;59: 439-447.
    • (2000) Ann Rheum Dis , vol.59 , pp. 439-447
    • Ulfgren, A.K.1    Gröndal, L.2    Lindblad, S.3
  • 45
    • 0029757371 scopus 로고    scopus 로고
    • Interindividual and intraindividual variability in plasma fibrinogen, TPA antigen, PAI activity, and CRP in healthy, young volunteers and patients with angina pectoris
    • de Maat MP, de Bart AC, Hennis BC, et al. Interindividual and intraindividual variability in plasma fibrinogen, TPA antigen, PAI activity, and CRP in healthy, young volunteers and patients with angina pectoris. Arterioscler Thromb Vasc Biol 1996;16:1156-1162.
    • (1996) Arterioscler Thromb Vasc Biol , vol.16 , pp. 1156-1162
    • De Maat, M.P.1    De Bart, A.C.2    Hennis, B.C.3
  • 46
    • 59649092203 scopus 로고    scopus 로고
    • Impact of genetic and environmental factors on hsCRP concentrations and response to therapeutic agents
    • Shen J, Ordovas JM. Impact of genetic and environmental factors on hsCRP concentrations and response to therapeutic agents. Clin Chem 2009;55:256-264.
    • (2009) Clin Chem , vol.55 , pp. 256-264
    • Shen, J.1    Ordovas, J.M.2
  • 47
    • 33644856647 scopus 로고    scopus 로고
    • Gene polymorphisms in periodontal health and disease
    • Takashiba S, Naruishi K. Gene polymorphisms in periodontal health and disease. Periodontol 2000 2006; 40:94-106.
    • (2006) Periodontol 2000 , vol.40 , pp. 94-106
    • Takashiba, S.1    Naruishi, K.2
  • 48
    • 84869272176 scopus 로고    scopus 로고
    • International HapMap Project. Accessed June 2
    • International HapMap Project. HapMap genome browser. Available at: http://hapmap.ncbi.nlm.nih.gov/cgi-perl/ gbrowse/hapmap28-B36/. Accessed June 2, 2012.
    • (2012) HapMap Genome Browser
  • 49
    • 84883432169 scopus 로고    scopus 로고
    • Accessed June 5, 2012
    • 1000 Genomes. Available at: http://www.1000genomes. org. Accessed June 5, 2012.
  • 50
    • 84883389088 scopus 로고    scopus 로고
    • Accessed February 12
    • Personalized Medicine Coalition. Available at: http:// www.personalizedmedicinecoalition.org. Accessed February 12, 2012.
    • (2012)
  • 51
    • 77955740567 scopus 로고    scopus 로고
    • Genetic variation in the RANKL/RANK/OPG signaling pathway is associated with bone turnover and bone mineral density in men
    • EMAS Study Group
    • Roshandel D, Holliday KL, Pye SR, et al; EMAS Study Group. Genetic variation in the RANKL/RANK/OPG signaling pathway is associated with bone turnover and bone mineral density in men. J Bone Miner Res 2010;25:1830-1838.
    • (2010) J Bone Miner Res , vol.25 , pp. 1830-1838
    • Roshandel, D.1    Holliday, K.L.2    Pye, S.R.3
  • 52
    • 84863997736 scopus 로고    scopus 로고
    • Proteomic analysis of gingival crevicular fluid for discovery of novel periodontal disease markers
    • Tsuchida S, Satoh M, Umemura H, et al. Proteomic analysis of gingival crevicular fluid for discovery of novel periodontal disease markers. Proteomics 2012; 12:2190-2202.
    • (2012) Proteomics , vol.12 , pp. 2190-2202
    • Tsuchida, S.1    Satoh, M.2    Umemura, H.3
  • 53
    • 84856597549 scopus 로고    scopus 로고
    • Novel protein identification methods for biomarker discovery via a proteomic analysis of periodontally healthy and diseased gingival crevicular fluid samples
    • Baliban RC, Sakellari D, Li Z, DiMaggio PA, Garcia BA, Floudas CA. Novel protein identification methods for biomarker discovery via a proteomic analysis of periodontally healthy and diseased gingival crevicular fluid samples. J Clin Periodontol 2012;39:203-212.
    • (2012) J Clin Periodontol , vol.39 , pp. 203-212
    • Baliban, R.C.1    Sakellari, D.2    Li, Z.3    Dimaggio, P.A.4    Garcia, B.A.5    Floudas, C.A.6
  • 54
    • 84870746585 scopus 로고    scopus 로고
    • The oral-systemic personalized medicine model at Marshfield Clinic
    • Glurich I, Acharya A, Shukla S, Nycz G, Brilliant M. The oral-systemic personalized medicine model at Marshfield Clinic. Oral Dis 2013;19:1-17.
    • (2013) Oral Dis , vol.19 , pp. 1-17
    • Glurich, I.1    Acharya, A.2    Shukla, S.3    Nycz, G.4    Brilliant, M.5
  • 55
    • 84883442675 scopus 로고    scopus 로고
    • S. 3822 (109th) . Accessed June 6
    • S. 3822 (109th): Genomics and Personalized Medicine Act of 2006. Available at: http://www.govtrack.us/ congress/bills/109/s3822/text. Accessed June 6, 2012.
    • (2012) Genomics and Personalized Medicine Act of 2006
  • 56
    • 84877354631 scopus 로고    scopus 로고
    • Accessed June 8
    • Publications Office of the European Union. Biobanks for Europe, a challenge for governance. Available at: http://bookshop.europa.eu/en/biobanks- for-europepbKINA25302/. Accessed June 8, 2012.
    • (2012) Biobanks for Europe, A Challenge for Governance
  • 57
    • 77957580213 scopus 로고    scopus 로고
    • Translational systems biology of inflammation: Potential applications to personalized medicine
    • Mi Q, Li NY, Ziraldo C, et al. Translational systems biology of inflammation: Potential applications to personalized medicine. Per Med 2010;7:549-559.
    • (2010) Per Med , vol.7 , pp. 549-559
    • Mi, Q.1    Li, N.Y.2    Ziraldo, C.3
  • 58
    • 77952163906 scopus 로고    scopus 로고
    • Translational systems approaches to the biology of inflammation and healing
    • Vodovotz Y, Constantine G, Faeder J, et al. Translational systems approaches to the biology of inflammation and healing. Immunopharmacol Immunotoxicol 2010;32:181-195.
    • (2010) Immunopharmacol Immunotoxicol , vol.32 , pp. 181-195
    • Vodovotz, Y.1    Constantine, G.2    Faeder, J.3
  • 59
    • 82955233708 scopus 로고    scopus 로고
    • Personalizing medicine with clinical pharmacogenetics
    • Scott SA. Personalizing medicine with clinical pharmacogenetics. Genet Med 2011;13:987-995.
    • (2011) Genet Med , vol.13 , pp. 987-995
    • Scott, S.A.1
  • 60
    • 84883345182 scopus 로고    scopus 로고
    • Accessed December 5
    • Pharmacogenomics Research Network. Available at: http://www.pgrn.org/. Accessed December 5, 2011.
    • (2011)
  • 61
    • 84883397533 scopus 로고    scopus 로고
    • Accessed December 5
    • The Pharmacogenomics Knowledgebase. Available at: http://www.pharmgkb. org/. Accessed December 5, 2011.
    • (2011)


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