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Volumn 9, Issue 10, 2013, Pages 2541-2553

Bi and tri-substituted phenyl rings containing bisbenzimidazoles bind differentially with DNA duplexes: A biophysical and molecular simulation study

(5) Singh, Manish a Sur, Souvik b Rastogi, Gaurav Kumar b Jayaram, B c Tandon, Vibha b

a UNIVERSITY OF DELHI (India)

b UNIVERSITY OF DELHI (India)

c INDIAN INSTITUTE OF TECHNOLOGY DELHI (India)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; LIGAND; OLIGODEOXYRIBONUCLEOTIDE; PIBENZIMOL;

BIOPHYSICS; CHEMICAL STRUCTURE; CHEMISTRY; CIRCULAR DICHROISM; CONFORMATION; METABOLISM; MOLECULAR DOCKING; MOLECULAR DYNAMICS; NUCLEOTIDE SEQUENCE; THERMODYNAMICS; ARTICLE;

BASE SEQUENCE; BIOPHYSICS; BISBENZIMIDAZOLE; CIRCULAR DICHROISM; DNA; LIGANDS; MODELS, MOLECULAR; MOLECULAR DOCKING SIMULATION; MOLECULAR DYNAMICS SIMULATION; NUCLEIC ACID CONFORMATION; OLIGODEOXYRIBONUCLEOTIDES; THERMODYNAMICS;

EID: 84883422143 PISSN: 1742206X EISSN: 17422051 Source Type: Journal
DOI: 10.1039/c3mb70169g Document Type: Article

Times cited : (8)

References (45)

1
- 0016663420
- F. Brun J. J. Toulme C. Helene Biochemistry 1975 14 558 563
- (1975) Biochemistry , vol.14 , pp. 558-563
- Brun, F.¹ Toulme, J.J.² Helene, C.³

2
- 0015243670
- C. Helene J. L. Dimicoli F. Brun Biochemistry 1971 10 3802 3809
- (1971) Biochemistry , vol.10 , pp. 3802-3809
- Helene, C.¹ Dimicoli, J.L.² Brun, F.³

3
- 0015955678
- J. L. Dimicoli C. Helene Biochemistry 1974 13 714 723
- (1974) Biochemistry , vol.13 , pp. 714-723
- Dimicoli, J.L.¹ Helene, C.²

4
- 0019399694
- C. Helene J. C. Maurizot Crit. Rev. Biochem. Mol. Biol. 1981 10 213 258
- (1981) Crit. Rev. Biochem. Mol. Biol. , vol.10 , pp. 213-258
- Helene, C.¹ Maurizot, J.C.²

5
- 84865457162
- G. S. Khan A. Shah U. R. Zia D. Barker J. Photochem. Photobiol., B 2012 115 105 118
- (2012) J. Photochem. Photobiol., B , vol.115 , pp. 105-118
- Khan, G.S.¹ Shah, A.² Zia, U.R.³ Barker, D.⁴

6
- 0034830898
- P. B. Dervan Bioorg. Med. Chem. 2001 9 2215 2235
- (2001) Bioorg. Med. Chem. , vol.9 , pp. 2215-2235
- Dervan, P.B.¹

7
- 0024495831
- M. Coll J. Aymami G. A. van der Marel J. H. van Boom A. Rich A. H. Wang Biochemistry 1989 28 310 320
- (1989) Biochemistry , vol.28 , pp. 310-320
- Coll, M.¹ Aymami, J.² Van Der Marel, G.A.³ Van Boom, J.H.⁴ Rich, A.⁵ Wang, A.H.⁶

8
- 0000672739
- T. J. Dwyer B. H. Geierstanger M. Mrksich P. B. Dervan D. E. Wemmer J. Am. Chem. Soc. 1993 115 9900 9906
- (1993) J. Am. Chem. Soc. , vol.115 , pp. 9900-9906
- Dwyer, T.J.¹ Geierstanger, B.H.² Mrksich, M.³ Dervan, P.B.⁴ Wemmer, D.E.⁵

9
- 0023040893
- R. E. Klevit D. E. Wemmer B. R. Reid Biochemistry 1986 25 3296 3303
- (1986) Biochemistry , vol.25 , pp. 3296-3303
- Klevit, R.E.¹ Wemmer, D.E.² Reid, B.R.³

10
- 0028449202
- J. W. Lown J. Mol. Recognit. 1994 7 79 88
- (1994) J. Mol. Recognit. , vol.7 , pp. 79-88
- Lown, J.W.¹

11
- 84873816342
- D. Wei W. D. Wilson S. Neidle J. Am. Chem. Soc. 2013 135 1369 1377
- (2013) J. Am. Chem. Soc. , vol.135 , pp. 1369-1377
- Wei, D.¹ Wilson, W.D.² Neidle, S.³

12
- 84870883196
- S. Wang R. Nanjunda K. Aston J. K. Bashkin W. D. Wilson Biochemistry 2012 51 9796 9806
- (2012) Biochemistry , vol.51 , pp. 9796-9806
- Wang, S.¹ Nanjunda, R.² Aston, K.³ Bashkin, J.K.⁴ Wilson, W.D.⁵

13
- 84856387590
- J. A. Raskatov J. L. Meier J. W. Puckett F. Yang P. Ramakrishnan P. B. Dervan Proc. Natl. Acad. Sci. U. S. A. 2012 109 1023 1028
- (2012) Proc. Natl. Acad. Sci. U. S. A. , vol.109 , pp. 1023-1028
- Raskatov, J.A.¹ Meier, J.L.² Puckett, J.W.³ Yang, F.⁴ Ramakrishnan, P.⁵ Dervan, P.B.⁶

14
- 84862663654
- N. Kaur A. Ranjan V. Tiwari R. Aneja V. Tandon PLoS One 2012 7 e39426
- (2012) PLoS One , vol.7 , pp. 39426
- Kaur, N.¹ Ranjan, A.² Tiwari, V.³ Aneja, R.⁴ Tandon, V.⁵

15
- 77956082532
- J. î. Dolenc S. Gerster W. F. van Gunsteren J. Phys. Chem. B 2010 114 11164 11172
- (2010) J. Phys. Chem. B , vol.114 , pp. 11164-11172
- Dolenc, J.I.¹ Gerster, S.² Van Gunsteren, W.F.³

16
- 75649113363
- I. S. Joung C. O. Persil N. V. Hud T. E. Cheatham, III Nucleic Acids Res. 2009 37 7715 7727
- (2009) Nucleic Acids Res. , vol.37 , pp. 7715-7727
- Joung, I.S.¹ Persil, C.O.² Hud, N.V.³ Cheatham III, T.E.⁴

17
- 80052020054
- L. Shen T. L. Johnson S. Clugston H. Huang K. J. Butenhof R. V. Stanton J. Chem. Inf. Model. 2011 51 1957 1965
- (2011) J. Chem. Inf. Model. , vol.51 , pp. 1957-1965
- Shen, L.¹ Johnson, T.L.² Clugston, S.³ Huang, H.⁴ Butenhof, K.J.⁵ Stanton, R.V.⁶

18
- 19944370144
- S. Y. Chen T. H. Lin J. Phys. Chem. B 2005 109 9764 9772
- (2005) J. Phys. Chem. B , vol.109 , pp. 9764-9772
- Chen, S.Y.¹ Lin, T.H.²

19
- 34249664445
- T. Tsukamoto Y. Ishikawa T. Natsume K. Dedachi N. Kurita Chem. Phys. Lett. 2007 441 136 142
- (2007) Chem. Phys. Lett. , vol.441 , pp. 136-142
- Tsukamoto, T.¹ Ishikawa, Y.² Natsume, T.³ Dedachi, K.⁴ Kurita, N.⁵

20
- 84880122263
- S. Mukherjee D. Bhattacharyya J. Biomol. Struct. Dyn. 2013 31 896 912
- (2013) J. Biomol. Struct. Dyn. , vol.31 , pp. 896-912
- Mukherjee, S.¹ Bhattacharyya, D.²

21
- 0032824383
- B. S. Reddy S. M. Sondhi J. W. Lown Pharmacol. Ther. 1999 84 1 111
- (1999) Pharmacol. Ther. , vol.84 , pp. 1-111
- Reddy, B.S.¹ Sondhi, S.M.² Lown, J.W.³

22
- 14344273472
- D. E. Wemmer Biopolymers 1999 52 197 211
- (1999) Biopolymers , vol.52 , pp. 197-211
- Wemmer, D.E.¹

23
- 0038203072
- P. M. Reddy P. T. Jindra A. L. Satz T. C. Bruice J. Am. Chem. Soc. 2003 125 7843 7848
- (2003) J. Am. Chem. Soc. , vol.125 , pp. 7843-7848
- Reddy, P.M.¹ Jindra, P.T.² Satz, A.L.³ Bruice, T.C.⁴

24
- 0034816616
- J. Ruiz-Chica M. A. Medina F. Sanchez-Jimenez F. J. Ramirez Biochem. Biophys. Res. Commun. 2001 285 437 446
- (2001) Biochem. Biophys. Res. Commun. , vol.285 , pp. 437-446
- Ruiz-Chica, J.¹ Medina, M.A.² Sanchez-Jimenez, F.³ Ramirez, F.J.⁴

25
- 0038692034
- J. Ruiz-Chica M. A. Medina F. Sanchez-Jimenez F. J. Ramirez Biochim. Biophys. Acta, Gene Struct. Expression 2003 1628 11 21
- (2003) Biochim. Biophys. Acta, Gene Struct. Expression , vol.1628 , pp. 11-21
- Ruiz-Chica, J.¹ Medina, M.A.² Sanchez-Jimenez, F.³ Ramirez, F.J.⁴

26
- 0030750092
- R. Caneva A. De Simoni L. Mayol L. Rossetti M. Savino Biochim. Biophys. Acta, Gene Struct. Expression 1997 1353 93 97
- (1997) Biochim. Biophys. Acta, Gene Struct. Expression , vol.1353 , pp. 93-97
- Caneva, R.¹ De Simoni, A.² Mayol, L.³ Rossetti, L.⁴ Savino, M.⁵

27
- 0037036084
- C. Canzonetta R. Caneva M. Savino A. Scipioni B. Catalanotti A. Galeone Biochim. Biophys. Acta, Gene Struct. Expression 2002 1576 136 142
- (2002) Biochim. Biophys. Acta, Gene Struct. Expression , vol.1576 , pp. 136-142
- Canzonetta, C.¹ Caneva, R.² Savino, M.³ Scipioni, A.⁴ Catalanotti, B.⁵ Galeone, A.⁶

28
- 79953177054
- H. K. Srivastava M. Chourasia D. Kumar G. N. Sastry J. Chem. Inf. Model. 2011 51 558 571
- (2011) J. Chem. Inf. Model. , vol.51 , pp. 558-571
- Srivastava, H.K.¹ Chourasia, M.² Kumar, D.³ Sastry, G.N.⁴

29
- 4444221565
- E. F. Pettersen T. D. Goddard C. C. Huang G. S. Couch D. M. Greenblatt E. C. Meng T. E. Ferrin J. Comput. Chem. 2004 25 1605 1612
- (2004) J. Comput. Chem. , vol.25 , pp. 1605-1612
- Pettersen, E.F.¹ Goddard, T.D.² Huang, C.C.³ Couch, G.S.⁴ Greenblatt, D.M.⁵ Meng, E.C.⁶ Ferrin, T.E.⁷

30
- 33644860901
- G. S. Couch D. K. Hendrix T. E. Ferrin Nucleic Acids Res. 2006 34 e29
- (2006) Nucleic Acids Res. , vol.34
- Couch, G.S.¹ Hendrix, D.K.² Ferrin, T.E.³

31
- 34247626260
- S. A. Shaikh B. Jayaram J. Med. Chem. 2007 50 2240 2244
- (2007) J. Med. Chem. , vol.50 , pp. 2240-2244
- Shaikh, S.A.¹ Jayaram, B.²

32
- 79959930132
- C. Blanchet M. Pasi K. Zakrzewska R. Lavery Nucleic Acids Res. 2011 39 web server issue W68 W73
- (2011) Nucleic Acids Res. , vol.39
- Blanchet, C.¹ Pasi, M.² Zakrzewska, K.³ Lavery, R.⁴

33
- 0035253618
- C. E. Bostock-Smith S. A. Harris C. A. Laughton M. S. Searle Nucleic Acids Res. 2001 29 693 702
- (2001) Nucleic Acids Res. , vol.29 , pp. 693-702
- Bostock-Smith, C.E.¹ Harris, S.A.² Laughton, C.A.³ Searle, M.S.⁴

34
- 34548672784
- A. Gupta A. Gandhimathi P. Sharma B. Jayaram Protein Pept. Lett. 2007 14 632 646
- (2007) Protein Pept. Lett. , vol.14 , pp. 632-646
- Gupta, A.¹ Gandhimathi, A.² Sharma, P.³ Jayaram, B.⁴

35
- 84883394145
- http://ambermd.org/

36
- 84883425226
- http://ambermd.org/antechamber/antechamber.html

37
- 84883388452
- http://www.gaussian.com/g-tech/g-ur/k-dft.htm

38
- 84883417279
- http://www.gaussian.com

39
- 0029878720
- W. Humphrey A. Dalke K. Schulten J. Mol. Graphics 1996 14 33 38
- (1996) J. Mol. Graphics , vol.14 , pp. 33-38
- Humphrey, W.¹ Dalke, A.² Schulten, K.³

40
- 34248596450
- T. Jain B. Jayaram Proteins 2007 67 1167 1178
- (2007) Proteins , vol.67 , pp. 1167-1178
- Jain, T.¹ Jayaram, B.²

41
- 79151486288
- M. Singh V. Tandon Eur. J. Med. Chem. 2011 46 659 669
- (2011) Eur. J. Med. Chem. , vol.46 , pp. 659-669
- Singh, M.¹ Tandon, V.²

42
- 0242667905
- U. Tawar A. K. Jain R. Chandra Y. Singh B. S. Dwarakanath N. K. Chaudhury L. Good V. Tandon Biochemistry 2003 42 13339 13346
- (2003) Biochemistry , vol.42 , pp. 13339-13346
- Tawar, U.¹ Jain, A.K.² Chandra, R.³ Singh, Y.⁴ Dwarakanath, B.S.⁵ Chaudhury, N.K.⁶ Good, L.⁷ Tandon, V.⁸

43
- 0014725117
- C. R. Cantor M. M. Warshaw H. Shapiro Biopolymers 1970 9 1059 1077
- (1970) Biopolymers , vol.9 , pp. 1059-1077
- Cantor, C.R.¹ Warshaw, M.M.² Shapiro, H.³

44
- 0020579962
- L. A. Marky K. S. Blumenfeld S. Kozlowski K. J. Breslauer Biopolymers 1983 22 1247 1257
- (1983) Biopolymers , vol.22 , pp. 1247-1257
- Marky, L.A.¹ Blumenfeld, K.S.² Kozlowski, S.³ Breslauer, K.J.⁴

45
- 8444227120
- F. Zsila Z. Bikadi M. Simonyi Org. Biomol. Chem. 2004 2 2902 2910
- (2004) Org. Biomol. Chem. , vol.2 , pp. 2902-2910
- Zsila, F.¹ Bikadi, Z.² Simonyi, M.³

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