메뉴 건너뛰기




Volumn 7875 LNBI, Issue , 2013, Pages 17-27

Reconstructing ancestral genomic orders using binary encoding and probabilistic models

Author keywords

ancestral genome; gene order; probabilistic method

Indexed keywords

ANCESTRAL GENOMES; CONDITIONAL PROBABILITIES; EVOLUTIONARY HISTORY; GENE ORDERS; GREEDY ALGORITHMS; ORDERS OF MAGNITUDE; PROBABILISTIC METHODS; PROBABILISTIC MODELS;

EID: 84883346975     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-38036-5_6     Document Type: Conference Paper
Times cited : (9)

References (22)
  • 3
    • 84883353861 scopus 로고    scopus 로고
    • A New Implmentation and Detailed Study of Breakpoint Analysis
    • Moret, B., et al.: A New Implmentation and Detailed Study of Breakpoint Analysis. In: Pacific Symposium on Biocomputing (2001)
    • Pacific Symposium on Biocomputing (2001)
    • Moret, B.1
  • 4
    • 0036143403 scopus 로고    scopus 로고
    • Genome-scale evolution: Reconstructing gene orders in the ancestral species
    • Guillaume, B., Pevzner, P.: Genome-scale evolution: reconstructing gene orders in the ancestral species. Genome Research 12(1), 26-36 (2002)
    • (2002) Genome Research , vol.12 , Issue.1 , pp. 26-36
    • Guillaume, B.1    Pevzner, P.2
  • 5
    • 66049158304 scopus 로고    scopus 로고
    • Breakpoint graphs and ancestral genome reconstructions
    • Max, A., Pevzner, P.: Breakpoint graphs and ancestral genome reconstructions. Genome Research 19(5), 943-957 (2009)
    • (2009) Genome Research , vol.19 , Issue.5 , pp. 943-957
    • Max, A.1    Pevzner, P.2
  • 8
    • 24044535485 scopus 로고    scopus 로고
    • Efficient sorting of genomic permutations by translocation, inversion and block interchange
    • Sophia, Y., Attie, O., Friedberg, R.: Efficient sorting of genomic permutations by translocation, inversion and block interchange. Bioinformatics 21(16), 3340-3346 (2005)
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3340-3346
    • Sophia, Y.1    Attie, O.2    Friedberg, R.3
  • 9
    • 56649089597 scopus 로고    scopus 로고
    • Decompositions of multiple breakpoint graphs and rapid exact solutions to the median problem
    • Crandall, K.A., Lagergren, J. (eds.) WABI 2008. Springer, Heidelberg
    • Xu, A.W., Sankoff, D.: Decompositions of multiple breakpoint graphs and rapid exact solutions to the median problem. In: Crandall, K.A., Lagergren, J. (eds.) WABI 2008. LNCS (LNBI), vol. 5251, pp. 25-37. Springer, Heidelberg (2008)
    • (2008) LNCS (LNBI) , vol.5251 , pp. 25-37
    • Xu, A.W.1    Sankoff, D.2
  • 11
    • 84883394584 scopus 로고    scopus 로고
    • Maximum likelihood phylogenetic reconstruction from high-resolution whole-genome data and a tree of 68 eukaryotes
    • Lin, Y., Hu, F., Tang, J., Moret, B.: Maximum likelihood phylogenetic reconstruction from high-resolution whole-genome data and a tree of 68 eukaryotes. In: Proc. 18th Pacific Symp. on Biocomputing, PSB 2013, pp. 285-296 (2013)
    • (2013) Proc. 18th Pacific Symp. On Biocomputing, PSB 2013 , pp. 285-296
    • Lin, Y.1    Hu, F.2    Tang, J.3    Moret, B.4
  • 12
    • 0028820333 scopus 로고
    • A new method of inference of ancestral nucleotide and amino acid sequences
    • Yang, Z., Sudhir, K., Masatoshi, N.: A new method of inference of ancestral nucleotide and amino acid sequences. Genetics 141(4), 1641-1650 (1995)
    • (1995) Genetics , vol.141 , Issue.4 , pp. 1641-1650
    • Yang, Z.1    Sudhir, K.2    Masatoshi, N.3
  • 13
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J.: Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of molecular evolution 17(6), 368-376 (1981)
    • (1981) Journal of Molecular Evolution , vol.17 , Issue.6 , pp. 368-376
    • Felsenstein, J.1
  • 14
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis, A.: RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22(21), 2688-2690 (2006)
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2688-2690
    • Stamatakis, A.1
  • 17
    • 84878024613 scopus 로고    scopus 로고
    • A consolidation algorithm for genomes fractionated after higher order polyploidization
    • Jahn, K., Zheng, C., Kováč, J., Sankoff, D.: A consolidation algorithm for genomes fractionated after higher order polyploidization. BMC Bioinformatics 13(suppl. 19), S8 (2012)
    • (2012) BMC Bioinformatics , vol.13 , Issue.SUPPL. 19
    • Jahn, K.1    Zheng, C.2    Kováč, J.3    Sankoff, D.4
  • 20
    • 80052624718 scopus 로고    scopus 로고
    • Fast and accurate phylogenetic reconstruction from high-resolution whole-genome data and a novel robustness estimator
    • special issue on RECOMB-CG 2010
    • Lin, Y., Rajan, V., Moret, B.: Fast and accurate phylogenetic reconstruction from high-resolution whole-genome data and a novel robustness estimator. J. Computational Biology 18(9), 1131-1139 (2011) (special issue on RECOMB-CG 2010)
    • (2011) J. Computational Biology , vol.18 , Issue.9 , pp. 1131-1139
    • Lin, Y.1    Rajan, V.2    Moret, B.3
  • 21
    • 84862269277 scopus 로고    scopus 로고
    • A mixture framework for inferring ancestral gene orders
    • Zhang, Y., Hu, F., Tang, J.: A mixture framework for inferring ancestral gene orders. BMC Genomics 13(suppl. 1), S7 (2012)
    • (2012) BMC Genomics , vol.13 , Issue.SUPPL. 1
    • Zhang, Y.1    Hu, F.2    Tang, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.