A probabilistic framework for inferring ancestral genomic orders

Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010

Volumn , Issue , 2010, Pages 179-184

  Ma, Jian ^a  

^a University of Illinois at Urbana Champaign   (United States)

Author keywords

Ancestral genome reconstruction; Comparative genomics

Indexed keywords

ANCESTRAL GENOMES; BREAK-POINTS; COMPARATIVE GENOMICS; DATA APPLICATION; POSTERIOR PROBABILITY; PROBABILISTIC FRAMEWORK; PROBABILISTIC METHODS; SYNTENY;

GENES;

BIOINFORMATICS;

EID: 79952417628     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BIBM.2010.5706559     Document Type: Conference Paper

References (7)

1. J. Ma, L. Zhang, B. B. Suh, B. J. Raney, R. C. Burhans, W. J. Kent, M. Blanchette, D. Haussler, and W. Miller, "Reconstructing contiguous regions of an ancestral genome," Genome Res, vol. 16, no. 12, pp. 1557-1565, 2006.
2. M. Rocchi, N. Archidiacono, and R. Stanyon, "Ancestral genomes reconstruction: An integrated, multidisciplinary approach is needed," Genome Res, vol. 16, no. 12, p. 1441, 2006.
3. D. Sankoff and M. Blanchette, "Probability models for genome rearrangement and linear invariants for phylogenetic inference." in RECOMB, 1999, pp. 302-309.
4. J. Ma, A. Ratan, B. J. Raney, B. B. Suh, L. Zhang, W. Miller, and D. Haussler, "DUPCAR: Reconstructing contiguous ancestral regions with duplications," J Comput Biol, vol. 15, no. 8, pp. 1007-1027, 2008.
5. H. Zhao and G. Bourque, "Recovering genome rearrangements in the mammalian phylogeny," Genome Res, vol. 19, no. 5, p. 934, 2009.
6. M. Alekseyev and P. Pevzner, "Breakpoint graphs and ancestral genome reconstructions," Genome Res, vol. 19, no. 5, p. 943, 2009.
7. C. Chauve and E. Tannier, "A methodological framework for the reconstruction of contiguous regions of ancestral genomes and its application to mammalian genomes," PLoS Comput Biol, vol. 4, no. 11, 2008.