Complete protein characterization using top-down mass spectrometry and ultraviolet photodissociation

Journal of the American Chemical Society

Volumn 135, Issue 34, 2013, Pages 12646-12651

  Shaw, Jared B ^a   Li, Wenzong ^a   Holden, Dustin D ^a   Zhang, Yan ^a   Griep Raming, Jens ^b   Fellers, Ryan T ^c   Early, Bryan P ^c   Thomas, Paul M ^c   Kelleher, Neil L ^c   Brodbelt, Jennifer S ^a  

^a UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^b THERMO FISHER SCIENTIFIC   (Germany)

^c NORTHWESTERN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALZHEIMER'S DISEASE; CANCER PATHOGENESIS; DISSOCIATION METHODS; POST-TRANSLATIONAL MODIFICATIONS; PROTEIN CHARACTERIZATION; PROTEIN MODIFICATIONS; TOP-DOWN MASS SPECTROMETRIES; ULTRAVIOLET PHOTODISSOCIATION;

CHARACTERIZATION; CHEMICAL REACTIONS; MASS SPECTROMETRY; MOLECULAR BIOLOGY; PHOTODISSOCIATION;

PROTEINS;

CATION; PEPTIDE; PEPTIDYLPROLYL ISOMERASE PIN1; PROTEIN; NIMA-INTERACTING PEPTIDYLPROLYL ISOMERASE; PEPTIDYLPROLYL ISOMERASE;

ALZHEIMER DISEASE; ARTICLE; CARCINOGENESIS; COLLISIONALLY ACTIVATED DISSOCIATION; ELECTRON; ELECTRON CAPTURE DETECTION; ELECTRON TRANSFER DISSOCIATION; ELECTRON TRANSPORT; HEATING; HUMAN; MASS SPECTROMETER; MASS SPECTROMETRY; METHODOLOGY; MOLECULAR INTERACTION; MUTATION; NUCLEOTIDE SEQUENCE; PHOTOCHEMISTRY; PROTEIN ANALYSIS; PROTEIN PHOSPHORYLATION; PROTEIN PROCESSING; PROTEOMICS; SITE DIRECTED MUTAGENESIS; ULTRAVIOLET PHOTODISSOCIATION; ULTRAVIOLET RADIATION; CHEMICAL STRUCTURE; GENETICS;

HUMANS; MASS SPECTROMETRY; MODELS, MOLECULAR; PEPTIDYLPROLYL ISOMERASE; PHOTOCHEMICAL PROCESSES; PROTEOMICS; ULTRAVIOLET RAYS;

EID: 84883270502     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja4029654     Document Type: Article

References (40)

1. Duncan, M. W.; Aebersold, R.; Caprioli, R. M. Nat. Biotechnol. 2010, 28, 659-664
2. Kelleher, N. L.; Lin, H. Y.; Valaskovic, G. A.; Aaserud, D. J.; Fridriksson, E. K.; McLafferty, F. W. J. Am. Chem. Soc. 1999, 121, 806-812
3. McLafferty, F. W.; Breuker, K.; Jin, Mi; Han, Xuemei; Infusini, G.; Jiang, Honghai; Kong, Xianglei; Begley, T. P. FEBS J. 2007, 274, 6256-6268
4. Zhou, H.; Ning, Z.; E. Starr, A.; Abu-Farha, M.; Figeys, D. Anal. Chem. 2011, 84, 720-734
5. Little, D. P.; Speir, J. P.; Senko, M. W.; O'Connor, P. B.; McLafferty, F. W. Anal. Chem. 1994, 66, 2809-2815
6. Raspopov, S. A.; El-Faramawy, A.; Thomson, B. A.; Siu, K. W. M. Anal. Chem. 2006, 78, 4572-4577
7. Zubarev, R. A.; Kelleher, N. L.; McLafferty, F. W. J. Am. Chem. Soc. 1998, 120, 3265-3266
8. Syka, J. E. P.; Coon, J. J.; Schroeder, M. J.; Shabanowitz, J.; Hunt, D. F. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 9528-9533
9. Horn, D. M.; Ge, Y.; McLafferty, F. W. Anal. Chem. 2000, 72, 4778-4784
10. HaÌŠkansson, K.; Chalmers, M. J.; Quinn, J. P.; McFarland, M. A.; Hendrickson, C. L.; Marshall, A. G. Anal. Chem. 2003, 75, 3256-3262
11. Ledvina, A. R.; Beauchene, N. A.; McAlister, G. C.; Syka, J. E. P.; Schwartz, J. C.; Griep-Raming, J.; Westphall, M. S.; Coon, J. J. Anal. Chem. 2010, 82, 10068-10074
12. Loo, J. A.; Edmonds, C. G.; Smith, R. D. Anal. Chem. 1991, 63, 2488-2499
13. Han, X.; Jin, M.; Breuker, K.; McLafferty, F. W. Science 2006, 314, 109-112
14. Capriotti, A. L.; Cavaliere, C.; Foglia, P.; Samperi, R.; LaganaÌ, A. J. Chromatogr., A 2011, 1218, 8760-8776
15. Bowers, W. D.; Delbert, S. S.; Hunter, R. L.; McIver, R. T. J. Am. Chem. Soc. 1984, 106, 7288-7289
16. Hunt, D. F.; Shabanowitz, J.; Yates, J. R. J. Chem. Soc., Chem. Commun. 1987, 0, 548-550
17. Thompson, M. S.; Cui, W.; Reilly, J. P. J. Am. Soc. Mass Spectrom. 2007, 18, 1439-1452
18. Williams, E. R.; Furlong, J. J. P.; McLafferty, F. W. J. Am. Soc. Mass Spectrom. 1990, 1, 288-294
19. Reilly, J. P. Mass Spectrom. Rev. 2009, 28, 425-447
20. Madsen, J. A.; Boutz, D. R.; Brodbelt, J. S. J. Proteome Res. 2010, 9, 4205-4214
21. Guan, Z.; Kelleher, N. L.; O'Connor, P. B.; Aaserud, D. J.; Little, D. P.; McLafferty, F. W. Int. J. Mass Spectrom. 1996, 157-158, 357-364
22. Kim, T. Y.; Thompson, M. S.; Reilly, J. P. Rapid Commun. Mass Spectrom. 2005, 19, 1657-1665
23. Moon, J. H.; Shin, Y. S.; Cha, H. J.; Kim, M. S. Rapid Commun. Mass Spectrom. 2007, 21, 359-368
24. Michalski, A.; Damoc, E.; Lange, O.; Denisov, E.; Nolting, D.; Müller, M.; Viner, R.; Schwartz, J.; Remes, P.; Belford, M.; Dunyach, J.-J.; Cox, J.; Horning, S.; Mann, M.; Makarov, A. Mol. Cell. Proteomics 2012, 11, 10.1074/mcp.O111.013698
25. Jez, J. M.; Ferrer, J.-L.; Bowman, M. E.; Dixon, R. A.; Noel, J. P. Biochemistry 2000, 39, 890-902
26. Zhang, Y.; Daum, S.; Wildemann, D.; Zhou, X. Z.; Verdecia, M. A.; Bowman, M. E.; Lücke, C.; Hunter, T.; Lu, K. P.; Fischer, G. ACS Chem. Biol. 2007, 2, 320-328
27. Sultana, R.; Boyd-Kimball, D.; Poon, H. F.; Cai, J.; Pierce, W. M.; Klein, J. B.; Markesbery, W. R.; Zhou, X. Z.; Lu, K. P.; Butterfield, D. A. Neurobiol. Aging 2006, 27, 918-925
28. Vasicek, L. A.; Ledvina, A. R.; Shaw, J. B.; Griep-Raming, J.; Westphall, M. S.; Coon, J. J.; Brodbelt, J. S. J. Am. Soc. Mass Spectrom. 2011, 22, 1105-1108
29. Senko, M. W.; Beu, S. C.; McLafferty, F. W. J. Am. Soc. Mass Spectrom. 1995, 6, 52-56
30. Vaisar, T.; Urban, J. J. Mass Spectrom. 1996, 31, 1185-1187
31. Gu, C.; Tsaprailis, G.; Breci, L.; Wysocki, V. H. Anal. Chem. 2000, 72, 5804-5813
32. Morgan, J. W.; Russell, D. H. J. Am. Soc. Mass Spectrom. 2006, 17, 721-729
33. Yoon, S. H.; Chung, Y. J.; Kim, M. S. J. Am. Soc. Mass Spectrom. 2008, 19, 645-655
34. Sze, S. K.; Ge, Y.; Oh; McLafferty, F. W. Anal. Chem. 2003, 75, 1599-1603
35. Ping, Lu, K.; Hanes, S. D.; Hunter, T. Nature 1996, 380, 544-547
36. Lu, K. P.; Zhou, X. Z. Nat. Rev. Mol. Cell Biol. 2007, 8, 904-916
37. Nakamura, K.; Greenwood, A.; Binder, L.; Bigio, E. H.; Denial, S.; Nicholson, L.; Zhou, X. Z.; Lu, K. P. Cell 2012, 149, 232-244
38. Butterfield, D. A.; Poon, H. F.; St Clair, D.; Keller, J. N.; Pierce, W. M.; Klein, J. B.; Markesbery, W. R. Neurobiol. Dis. 2006, 22, 223-232
39. Sultana, R.; Butterfield, D. A. J. Alzheimer's Dis. 2013, 33, S243-S251
40. Xu, G. G.; Zhang, Y.; Mercedes-Camacho, A. Y.; Etzkorn, F. A. Biochemistry 2011, 50, 9545-9550