Activated-ion electron transfer dissociation improves the ability of electron transfer dissociation to identify peptides in a complex mixture

Analytical Chemistry

Volumn 82, Issue 24, 2010, Pages 10068-10074

  Ledvina, Aaron R ^a   Beauchene, Nicole A ^a   McAlister, Graeme C ^a   Syka, John E P ^b   Schwartz, Jae C ^b   Griep Raming, Jens ^c   Westphall, Michael S ^a   Coon, Joshua J ^a  

^a UNIVERSITY OF WISCONSIN SCHOOL OF MEDICINE AND PUBLIC HEALTH   (United States)

^b Thermo Fisher Scientific   (United States)

^c THERMO FISHER SCIENTIFIC   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

COLLISION-ACTIVATED DISSOCIATIONS; COLLISIONAL ACTIVATION; COMPLEX MIXTURE; ELECTRON TRANSFER DISSOCIATION; HUMAN CELLS; ION REACTIONS; LINEAR ION TRAP; QUADRUPOLES; SPECTRAL MATCH; TRYPTIC DIGESTS; WHOLE CELL;

ELECTRON TRANSITIONS; IONS; MASS SPECTROMETRY; PEPTIDES;

DISSOCIATION;

CELL EXTRACT; METALLOPROTEINASE; PEPTIDE FRAGMENT; PEPTIDYL LYS METALLOENDOPEPTIDASE; PEPTIDYL-LYS METALLOENDOPEPTIDASE; PROTEIN; TRYPSIN;

ARTICLE; CHEMISTRY; HUMAN; INFRARED RADIATION; INSTRUMENTATION; ISOLATION AND PURIFICATION; MASS SPECTROMETRY; METABOLISM; METHODOLOGY;

CELL EXTRACTS; HUMANS; INFRARED RAYS; MASS SPECTROMETRY; METALLOENDOPEPTIDASES; PEPTIDE FRAGMENTS; PROTEINS; TRYPSIN;

EID: 78650377739     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac1020358     Document Type: Article

References (44)

1. Hunt, D. F., Yates, J. R., Shabanowitz, J., Winston, S., and Hauer, C. R. Proc. Natl. Acad. Sci. U.S.A. 1986, 83, 6233-6237
2. Aebersold, R. and Mann, M. Nature 2003, 422, 198-207
3. Coon, J. J., Syka, J. E. P., Shabanowitz, J., and Hunt, D. F. Biotechniques 2005, 38, 519
4. de Godoy, L. M. F., Olsen, J. V., Cox, J., Nielsen, M. L., Hubner, N. C., Frohlich, F., Walther, T. C., and Mann, M. Nature 2008, 455, 1251-U1260
5. Washburn, M. P., Wolters, D., and Yates, J. R. Nat. Biotechnol. 2001, 19, 242-247
6. Sleno, L. and Volmer, D. A. J. Mass Spectrom. 2004, 39, 1091-1112
7. Hunt, D. F., Buko, A. M., Ballard, J. M., Shabanowitz, J., and Giordani, A. B. Biomed. Mass Spectrom. 1981, 8, 397-408
8. McLuckey, S. A. J. Am. Soc. Mass Spectrom. 1992, 3, 599-614
9. Verentchikov, A. N., Ens, W., and Standing, K. G. Anal. Chem. 1994, 66, 126-133
10. Morris, H. R., Paxton, T., Dell, A., Langhorne, J., Berg, M., Bordoli, R. S., Hoyes, J., and Bateman, R. H. Rapid Commun. Mass Spectrom. 1996, 10, 889-896
11. Wysocki, V. H., Tsaprailis, G., Smith, L. L., and Breci, L. A. J. Mass Spectrom. 2000, 35, 1399-1406
12. Dongre, A. R., Jones, J. L., Somogyi, A., and Wysocki, V. H. J. Am. Chem. Soc. 1996, 118, 8365-8374
13. Schroeder, M. J., Shabanowitz, J., Schwartz, J. C., Hunt, D. F., and Coon, J. J. Anal. Chem. 2004, 76, 3590-3598
14. DeGnore, J. P. and Qin, J. J. Am. Soc. Mass Spectrom. 1998, 9, 1175-1188
15. Olsen, J. V. and Mann, M. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 13417-13422
16. Ulintz, P. J., Yocum, A. K., Bodenmiller, B., Aebersold, R., Andrews, P. C., and Nesvizhskii, A. I. J. Proteome Res. 2009, 8, 887-899
17. Villen, J., Beausoleil, S. A., and Gygi, S. P. Proteomics 2008, 8, 4444-4452
18. Zubarev, R. A., Kelleher, N. L., and McLafferty, F. W. J. Am. Chem. Soc. 1998, 120, 3265-3266
19. Syka, J. E. P., Coon, J. J., Schroeder, M. J., Shabanowitz, J., and Hunt, D. F. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 9528-9533
20. Coon, J. J., Syka, J. E. P., Schwartz, J. C., Shabanowitz, J., and Hunt, D. F. Int. J. Mass Spectrom. 2004, 236, 33-42
21. Good, D. M. and Coon, J. J. Biotechniques 2006, 40, 783-789
22. Good, D. M., Wirtala, M., McAlister, G. C., and Coon, J. J. Mol. Cell. Proteomics 2007, 6, 1942-1951
23. Swaney, D. L., McAlister, G. C., Wirtala, M., Schwartz, J. C., Syka, J. E. P., and Coon, J. J. Anal. Chem. 2007, 79, 477-485
24. Oh, H. B. and McLafferty, F. W. Bull. Korean Chem. Soc. 2006, 27, 389-394
25. Oh, H., Breuker, K., Sze, S. K., Ge, Y., Carpenter, B. K., and McLafferty, F. W. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 15863-15868
26. Breuker, K., Oh, H. B., Horn, D. M., Cerda, B. A., and McLafferty, F. W. J. Am. Chem. Soc. 2002, 124, 6407-6420
27. Senko, M. W., Speir, J. P., and McLafferty, F. W. Anal. Chem. 1994, 66, 2801-2808
28. Cooper, H. J., Hakansson, K., and Marshall, A. G. Mass Spectrom. Rev. 2005, 24, 201-222
29. Horn, D. M., Ge, Y., and McLafferty, F. W. Anal. Chem. 2000, 72, 4778-4784
30. Ben Hamidane, H., Chiappe, D., Hartmer, R., Vorobyev, A., Moniatte, M., and Tsybin, Y. O. J. Am. Soc. Mass Spectrom. 2009, 20, 567-575
31. Xia, Y., Han, H., and McLuckey, S. A. Anal. Chem. 2008, 80, 1111-1117
32. Ledvina, A. R., McAlister, G. C., Gardner, M. W., Smith, S. I., Madsen, J. A., Schwartz, J. C., Stafford, G. C., Syka, J. E. P., Brodbelt, J. S., and Coon, J. J. Angew. Chem., Int. Ed. 2009, 48, 8526-8528
33. Swaney, D. L., McAlister, G. C., and Coon, J. J. Nat. Methods 2008, 5, 959-964
34. Zhang, Y., Ficarro, S. B., Li, S. J., and Marto, J. A. J. Am. Soc. Mass Spectrom. 2009, 20, 1425-1434
35. McAlister, G. C., Phanstiel, D., Wenger, C. D., Lee, M. V., and Coon, J. J. Anal. Chem. 2010, 82, 316-322
36. Geer, L. Y., Markey, S. P., Kowalak, J. A., Wagner, L., Xu, M., Maynard, D. M., Yang, X. Y., Shi, W. Y., and Bryant, S. H. J. Proteome Res. 2004, 3, 958-964
37. Moore, R. E., Young, M. K., and Lee, T. D. J. Am. Soc. Mass Spectrom. 2002, 13, 378-386
38. Elias, J. E. and Gygi, S. P. Nat. Methods 2007, 4, 207-214
39. Han, H. L., Xia, Y., and McLuckey, S. A. J. Proteome Res. 2007, 6, 3062-3069
40. Gardner, M. W., Smith, S. I., Ledvina, A. R., Madsen, J. A., Coon, J. J., Schwartz, J. C., Stafford, G. C., and Brodbelt, J. S. Anal. Chem. 2009, 81, 8109-8118
41. Remes, P. M. and Glish, G. L. J. Phys. Chem. A 2009, 113, 3447-3454
42. Swaney, D. L., Wenger, C. D., Thomson, J. A., and Coon, J. J. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 995-1000
43. Grimsrud, P. A., Swaney, D. L., Wenger, C. D., Beauchene, N. A., and Coon, J. J. ACS Chem. Biol. 2010, 5, 105-119
44. Flora, J. W. and Muddiman, D. C. Anal. Chem. 2001, 73, 3305-3311