-
1
-
-
79957932376
-
Dindel: Accurate indel calls from short-read data
-
Albers CA, Lunter G, MacArthur DG, McVean G, Ouwehand WH, Durbin R (2011) Dindel: accurate indel calls from short-read data. Genome Res 21: 961-973.
-
(2011)
Genome Res
, vol.21
, pp. 961-973
-
-
Albers, C.A.1
Lunter, G.2
MacArthur, D.G.3
McVean, G.4
Ouwehand, W.H.5
Durbin, R.6
-
2
-
-
79959640102
-
Evaluation of next generation sequencing software in mapping and assembly
-
Bao S, Jiang R, Kwan W (2011) Evaluation of next generation sequencing software in mapping and assembly. J Hum Genet 56(6): 406-414.
-
(2011)
J Hum Genet
, vol.56
, Issue.6
, pp. 406-414
-
-
Bao, S.1
Jiang, R.2
Kwan, W.3
-
3
-
-
70350664649
-
De novo transcriptome assembly with ABySS
-
Birol I, Jackman SD, Nielsen CB, Quian JQ, Varhol R, Stazyk G, Morin RD, Zhao Y, Hirst M, Schein JE, Hormans DE, Connors JM, Gascoyne RD, Marra MA, Jones SJ (2009) De novo transcriptome assembly with ABySS. Bioinformatics 25(21): 2872-2877.
-
(2009)
Bioinformatics
, vol.25
, Issue.21
, pp. 2872-2877
-
-
Birol, I.1
Jackman, S.D.2
Nielsen, C.B.3
Quian, J.Q.4
Varhol, R.5
Stazyk, G.6
Morin, R.D.7
Zhao, Y.8
Hirst, M.9
Schein, J.E.10
Hormans, D.E.11
Connors, J.M.12
Gascoyne, R.D.13
Marra, M.A.14
Jones, S.J.15
-
4
-
-
79959795786
-
Improved survival with vemurafenib in melanoma with BRAF V600E mutation
-
Chapman PB, Hauschild A, Robert C, Haanen JB, Ascierto P, Larkin J, Dummer R, Garbe C, Testori A, Maio M, Hogg D, Lorigan P, Lebbe C, Jouary T, Schadendorf D, Ribas A, O'Day SJ, Sosman JA, Kirkwood JM, Eggermont AM, Dreno B, Nolop K, Li J, Nelson B, Hou J, Lee RJ, Flaherty KT, McArthur GA (2011) Improved survival with vemurafenib in melanoma with BRAF V600E mutation. N Engl J Med 364: 2507-2516.
-
(2011)
N Engl J Med
, vol.364
, pp. 2507-2516
-
-
Chapman, P.B.1
Hauschild, A.2
Robert, C.3
Haanen, J.B.4
Ascierto, P.5
Larkin, J.6
Dummer, R.7
Garbe, C.8
Testori, A.9
Maio, M.10
Hogg, D.11
Lorigan, P.12
Lebbe, C.13
Jouary, T.14
Schadendorf, D.15
Ribas, A.16
O'Day, S.J.17
Sosman, J.A.18
Kirkwood, J.M.19
Eggermont, A.M.20
Dreno, B.21
Nolop, K.22
Li, J.23
Nelson, B.24
Hou, J.25
Lee, R.J.26
Flaherty, K.T.27
McArthur, G.A.28
more..
-
5
-
-
69549116107
-
BreakDancer: An algorithm for high-resloution mapping of genomic structural variation
-
Chen K, Wallis JW, McLellan MD, Larson DE, Kalicki JM, Pohl CS, McGrath SD, Wendl MC, Zhang Q, Locke DP, Shi X, Fulton RS, Ley TJ, Wilson RK, Ding L, Mardis ER (2009) BreakDancer: an algorithm for high-resloution mapping of genomic structural variation. Nat Methods 6: 677-681.
-
(2009)
Nat Methods
, vol.6
, pp. 677-681
-
-
Chen, K.1
Wallis, J.W.2
McLellan, M.D.3
Larson, D.E.4
Kalicki, J.M.5
Pohl, C.S.6
McGrath, S.D.7
Wendl, M.C.8
Zhang, Q.9
Locke, D.P.10
Shi, X.11
Fulton, R.S.12
Ley, T.J.13
Wilson, R.K.14
Ding, L.15
Mardis, E.R.16
-
6
-
-
58149218240
-
High-resolution mapping of copy-number alterations with massively parallel sequencing
-
Chiang DY, Getz G, Jaffe DB, O'Kelly MJ, Zhao X, Carter SL, Russ C, Nusbaum C, Meyerson M, Lander ES (2009) High-resolution mapping of copy-number alterations with massively parallel sequencing. Nat Methods 6: 99-103.
-
(2009)
Nat Methods
, vol.6
, pp. 99-103
-
-
Chiang, D.Y.1
Getz, G.2
Jaffe, D.B.3
O'Kelly, M.J.4
Zhao, X.5
Carter, S.L.6
Russ, C.7
Nusbaum, C.8
Meyerson, M.9
Lander, E.S.10
-
7
-
-
84874025843
-
Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
-
Cibulskis K, Lawrence MS, Carter SL, Sivachenko A, Jaffe D, Sougnez C, Gabriel S, Meyerson M, Lander ES, Getz G (2013) Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nat Biotechnol 31: 213-219.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 213-219
-
-
Cibulskis, K.1
Lawrence, M.S.2
Carter, S.L.3
Sivachenko, A.4
Jaffe, D.5
Sougnez, C.6
Gabriel, S.7
Meyerson, M.8
Lander, E.S.9
Getz, G.10
-
8
-
-
84860570409
-
Next generation sequencing ready for the clinics?
-
Desai AN, Jere A (2012) Next Generation Sequencing: ready for the clinics? Clin Genet 81: 503-510.
-
(2012)
Clin Genet
, vol.81
, pp. 503-510
-
-
Desai, A.N.1
Jere, A.2
-
9
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing B, Green P (1998b) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8: 186-194.
-
(1998)
Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
10
-
-
0031955518
-
Base-calling of automated sequencer traces using phred I. Accuracy assessment
-
Ewing B, Hilier L, Wendl MC, Green P (1998a) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8: 175-185.
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hilier, L.2
Wendl, M.C.3
Green, P.4
-
11
-
-
84863393080
-
Intratumour heterogeneity and branched evolution revealed by multiregion sequencing
-
Gerlinger M, Rowan AJ, Horswell S, Math M, Larkin J, Endesfelder D, Gronroos E, Martinez P, Matthews N, Stewart A, Tarpey P, Varela I, Phillimore B, Begum S, McDonald N, Butler A, Jones D, Raine K, Latimer C, Santos CR, Nohadani M, Eklund AC, Spencer-Dene B, Clark G, Pickering L, Stamp G, Gore M, Szallasi Z, Downward J, Futreal A, Swanton C (2012) Intratumour heterogeneity and branched evolution revealed by multiregion sequencing. N Engl J Med 366: 883-892.
-
(2012)
N Engl J Med
, vol.366
, pp. 883-892
-
-
Gerlinger, M.1
Rowan, A.J.2
Horswell, S.3
Math, M.4
Larkin, J.5
Endesfelder, D.6
Gronroos, E.7
Martinez, P.8
Matthews, N.9
Stewart, A.10
Tarpey, P.11
Varela, I.12
Phillimore, B.13
Begum, S.14
McDonald, N.15
Butler, A.16
Jones, D.17
Raine, K.18
Latimer, C.19
Santos, C.R.20
Nohadani, M.21
Eklund, A.C.22
Spencer-Dene, B.23
Clark, G.24
Pickering, L.25
Stamp, G.26
Gore, M.27
Szallasi, Z.28
Downward, J.29
Futreal, A.30
Swanton, C.31
more..
-
12
-
-
77951631386
-
The isolation of nucleic acids from fixed paraffin-embedded tissues-which methods are useful when?
-
Gilbert MTP, Haselkorn T, Bunce M, Sanchez JJ, Lucas SB, Jewell LD, Van Marck E, Worobey M (2007) The isolation of nucleic acids from fixed, paraffin-embedded tissues-which methods are useful when? PLoS One 2(6): e 537.
-
(2007)
PLoS One
, vol.2
, Issue.6
-
-
Gilbert, M.T.P.1
Haselkorn, T.2
Bunce, M.3
Sanchez, J.J.4
Lucas, S.B.5
Jewell, L.D.6
Van Marck, E.7
Worobey, M.8
-
13
-
-
79952194317
-
Discovery and genotyping of genome structural polymorphism by sequencing on a population scale
-
Handsaker RE, Korn JM, Nemesh J, McCarroll SA (2011) Discovery and genotyping of genome structural polymorphism by sequencing on a population scale. Nat Genet 43: 269-276.
-
(2011)
Nat Genet
, vol.43
, pp. 269-276
-
-
Handsaker, R.E.1
Korn, J.M.2
Nemesh, J.3
McCarroll, S.A.4
-
14
-
-
77950941484
-
Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing
-
Horner DS, Pavesi G, Castrignano T, De Meo PD, Liuni S, Sammeth M, Picardi Pesole G E (2010) Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing. Brief Bioinform 11: 181-197.
-
(2010)
Brief Bioinform
, vol.11
, pp. 181-197
-
-
Horner, D.S.1
Pavesi, G.2
Castrignano, T.3
De Meo, P.D.4
Liuni, S.5
Sammeth, M.6
Picardi Pesole, G.E.7
-
15
-
-
79951748341
-
CNAseg-A novel framework for identification of copy number changes in cancer from second-generation sequencing data
-
Ivakhno S, Royce T, Cox AJ, Evers DJ, Cheetham RK, Tavare S (2010) CNAseg-A novel framework for identification of copy number changes in cancer from second-generation sequencing data. Bioinformatics 26: 3051-3058.
-
(2010)
Bioinformatics
, vol.26
, pp. 3051-3058
-
-
Ivakhno, S.1
Royce, T.2
Cox, A.J.3
Evers, D.J.4
Cheetham, R.K.5
Tavare, S.6
-
16
-
-
80053173227
-
Targeted high throughput sequencing in clinical cancer Settings: Formaldehyde fixed-paraffin embedded (FFPE) tumor tissues, input amount and tumor heterogeneity
-
Kerick M, Isau M, Timmermann B, Sultmann H, Herwig R, Krobitsch S, Schaefer G, Verdorfer I, Bartsch G, Klocker H, Lehrach H, Schweiger MR (2011) Targeted high throughput sequencing in clinical cancer Settings: formaldehyde fixed-paraffin embedded (FFPE) tumor tissues, input amount and tumor heterogeneity. BMC Med Genomics 4: 68.
-
(2011)
BMC Med Genomics
, vol.4
, pp. 68
-
-
Kerick, M.1
Isau, M.2
Timmermann, B.3
Sultmann, H.4
Herwig, R.5
Krobitsch, S.6
Schaefer, G.7
Verdorfer, I.8
Bartsch, G.9
Klocker, H.10
Lehrach, H.11
Schweiger, M.R.12
-
17
-
-
84863229597
-
VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
-
Koboldt DC, Zhang Q, Larson DE, Shen D, McLellan MD, Lin L, Miller CA, Mardis ER, Ding L, Wilson RK (2012) VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res 22: 568-576.
-
(2012)
Genome Res
, vol.22
, pp. 568-576
-
-
Koboldt, D.C.1
Zhang, Q.2
Larson, D.E.3
Shen, D.4
McLellan, M.D.5
Lin, L.6
Miller, C.A.7
Mardis, E.R.8
Ding, L.9
Wilson, R.K.10
-
18
-
-
84856565531
-
SomaticSniper: Identification of somatic point mutations in whole genome sequencing data
-
Larson DE, Harris CC, Chen K, Koboldt DC, Abbott TE, Dooling DJ, Ley TJ, Mardis ER, Wilson RK, Ding L (2012) SomaticSniper: identification of somatic point mutations in whole genome sequencing data. Bioinformatics 28: 311-317.
-
(2012)
Bioinformatics
, vol.28
, pp. 311-317
-
-
Larson, D.E.1
Harris, C.C.2
Chen, K.3
Koboldt, D.C.4
Abbott, T.E.5
Dooling, D.J.6
Ley, T.J.7
Mardis, E.R.8
Wilson, R.K.9
Ding, L.10
-
19
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R (2009a) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
20
-
-
77949587649
-
Fast and accurate long-read alignment with Burrows-Wheeler transform
-
Li H, Durbin R (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26: 589-595.
-
(2010)
Bioinformatics
, vol.26
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
21
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R (2009b) The sequence alignment/map format and SAMtools. Bioinformatics 25: 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
22
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
Li H, Ruan J, Durbin R (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 18: 1851-1858.
-
(2008)
Genome Res
, vol.18
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
-
23
-
-
84862776857
-
Identification of ALK and RET gene fusions from colorectal and lung cancer biopsies
-
Lipson D, Capelletti M, Yelensky R, Otto G, Parker A, Jarosz M, Curran JA, Balasubramanian S, Bloom T, Brennan KW, Donahue A, Downing SR, Frampton GM, Garcia L, Juhn F, Mitchell KC, White E, White J, Zwirko Z, Peretz T, Nechustan H, Soussan-Gutman L, Kim J, Sasaki H, Kim HR, Park SI, Ercan D, Sheehan CE, Ross JS, Cronin MT, Janne PA, Stephens PJ (2012) Identification of ALK and RET gene fusions from colorectal and lung cancer biopsies. Nat Med 18(3): 382-384.
-
(2012)
Nat Med
, vol.18
, Issue.3
, pp. 382-384
-
-
Lipson, D.1
Capelletti, M.2
Yelensky, R.3
Otto, G.4
Parker, A.5
Jarosz, M.6
Curran, J.A.7
Balasubramanian, S.8
Bloom, T.9
Brennan, K.W.10
Donahue, A.11
Downing, S.R.12
Frampton, G.M.13
Garcia, L.14
Juhn, F.15
Mitchell, K.C.16
White, E.17
White, J.18
Zwirko, Z.19
Peretz, T.20
Nechustan, H.21
Soussan-Gutman, L.22
Kim, J.23
Sasaki, H.24
Kim, H.R.25
Park, S.I.26
Ercan, D.27
Sheehan, C.E.28
Ross, J.S.29
Cronin, M.T.30
Janne, P.A.31
Stephens, P.J.32
more..
-
24
-
-
79956307251
-
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
-
Lunter G, Goodson M (2011) Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res 21: 936-939.
-
(2011)
Genome Res
, vol.21
, pp. 936-939
-
-
Lunter, G.1
Goodson, M.2
-
25
-
-
84942887758
-
SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler
-
Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, He G, Chen Y, Pan Q, Liu Y, Tang J, Wu G, Zhang H, Shi Y, Liu Y, Chang Yu, Wang B, Lu Y, Han C, Cheung DW, Yiu SM, Peng S, Xiaoqian Z, Liu G, Liao X, Li Y, Yang H, Wang J, Lam TW, Wang J (2012) SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 1(1): 18.
-
(2012)
Gigascience
, vol.1
, Issue.1
, pp. 18
-
-
Luo, R.1
Liu, B.2
Xie, Y.3
Li, Z.4
Huang, W.5
Yuan, J.6
He, G.7
Chen, Y.8
Pan, Q.9
Liu, Y.10
Tang, J.11
Wu, G.12
Zhang, H.13
Shi, Y.14
Liu, Y.15
Yu, C.16
Wang, B.17
Lu, Y.18
Han, C.19
Cheung, D.W.20
Yiu, S.M.21
Peng, S.22
Xiaoqian, Z.23
Liu, G.24
Liao, X.25
Li, Y.26
Yang, H.27
Wang, J.28
Lam, T.W.29
Wang, J.30
more..
-
26
-
-
77957911880
-
Use of cancer-specific genomic rearrangements to quantify disease burden in plasma from patients with solid tumours
-
McBride DJ, Orpana AK, Sotiriou C, Joensuu H, Stephens PJ, Mudie LJ, Hamalainen E, Stebbings LA, Anderson LC, Flanagan AM, Durbecq V, Ignatiadis M, Kallioniemi O, Heckman CA, Alitalo K, Edgren H, Futreal PA, Stratton MR, Campbell PJ (2010) Use of cancer-specific genomic rearrangements to quantify disease burden in plasma from patients with solid tumours. Genes Chromosome Cancer 49(11): 1062-1069.
-
(2010)
Genes Chromosome Cancer
, vol.49
, Issue.11
, pp. 1062-1069
-
-
McBride, D.J.1
Orpana, A.K.2
Sotiriou, C.3
Joensuu, H.4
Stephens, P.J.5
Mudie, L.J.6
Hamalainen, E.7
Stebbings, L.A.8
Anderson, L.C.9
Flanagan, A.M.10
Durbecq, V.11
Ignatiadis, M.12
Kallioniemi, O.13
Heckman, C.A.14
Alitalo, K.15
Edgren, H.16
Futreal, P.A.17
Stratton, M.R.18
Campbell, P.J.19
-
27
-
-
72849144434
-
Sequencing technologies-The next generation
-
Metzker ML (2010) Sequencing technologies-The next generation. Nat Rev Genet 11: 31-46.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
28
-
-
69949162760
-
Gefitinib or carboplatin-paclitaxel in pulmonary adenocarcinoma
-
Mok TS, Wu YL, Thongprasert S, Yang CH, Chu DT, Saijo N, Sunpaweravong P, Han B, Margono B, Ichinose Y, Nishiwaki Y, Ohe Y, Yang JJ, Chewaskulyong B, Jiang H, Duffield EL, Watkins CL, Armour AA, Fukuoka M (2009) Gefitinib or carboplatin-paclitaxel in pulmonary adenocarcinoma. N Engl J Med 361: 947-957.
-
(2009)
N Engl J Med
, vol.361
, pp. 947-957
-
-
Mok, T.S.1
Wu, Y.L.2
Thongprasert, S.3
Yang, C.H.4
Chu, D.T.5
Saijo, N.6
Sunpaweravong, P.7
Han, B.8
Margono, B.9
Ichinose, Y.10
Nishiwaki, Y.11
Ohe, Y.12
Yang, J.J.13
Chewaskulyong, B.14
Jiang, H.15
Duffield, E.L.16
Watkins, C.L.17
Armour, A.A.18
Fukuoka, M.19
-
29
-
-
34447298637
-
Genetic epidemiology of BRCA muataions-family history detects less than 50% of the mutation carriers
-
Møller P, Hagen AL, Apold J, Maehle L, Clark N, Fiane B, Løvslett K, Hovig E, Vabø A (2007) Genetic epidemiology of BRCA muataions-family history detects less than 50% of the mutation carriers. Eur J Cancer 43(11): 1713-1717.
-
(2007)
Eur J Cancer
, vol.43
, Issue.11
, pp. 1713-1717
-
-
Møller, P.1
Hagen, A.L.2
Apold, J.3
Maehle, L.4
Clark, N.5
Fiane, B.6
Løvslett, K.7
Hovig, E.8
Vabø, A.9
-
30
-
-
84857990816
-
A comparative analysis of exome capture
-
Parla JS, Iossifov I, Grabill I, Spector MS, Kramer M, McCombie WR (2011) A comparative analysis of exome capture. Genome Biol 12: 1-17.
-
(2011)
Genome Biol
, vol.12
, pp. 1-17
-
-
Parla, J.S.1
Iossifov, I.2
Grabill, I.3
Spector, M.S.4
Kramer, M.5
McCombie, W.R.6
-
31
-
-
84859249611
-
JointSNVMix: A probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data
-
Roth A, Ding J, Morin R, Crisan A, Ha G, Giuliany R, Bashashati A, Hirst M, Turashvili G, Oloumi A, Marra MA, Aparicio S, Shah SP (2012) JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data. Bioinformatics 28: 907-913.
-
(2012)
Bioinformatics
, vol.28
, pp. 907-913
-
-
Roth, A.1
Ding, J.2
Morin, R.3
Crisan, A.4
Ha, G.5
Giuliany, R.6
Bashashati, A.7
Hirst, M.8
Turashvili, G.9
Oloumi, A.10
Marra, M.A.11
Aparicio, S.12
Shah, S.P.13
-
32
-
-
79960597679
-
An integrated semiconductor device enabling non-optical genome sequencing
-
Rothberg JM, Hinz W, Rearick TM, Schultz J, Mileski W, Davey M, Leamon JH, Johnson K, Milgrew MJ, Edwards M, Hoon J, Simons JF, Marran D, Myers JW, Davidson JF, Branting A, Nobile JR, Puc BP, Light D, Clark TA, Huber M, Branciforte JT, Stoner IB, Cawley SE, Lyons M, Fu Y, Homer N, Sedova M, Miao X, Reed B, Sabina J, Feierstein E, Schorn M, Alanjary M, Dimalanta E, Dressman D, Kasinskas R, Sokolsky T, Fidanza JA, Namsaraev E, McKernan KJ, Williams AJ, Roth GT, Bustillo J (2011) An integrated semiconductor device enabling non-optical genome sequencing. Nature 475: 348-352.
-
(2011)
Nature
, vol.475
, pp. 348-352
-
-
Rothberg, J.M.1
Hinz, W.2
Rearick, T.M.3
Schultz, J.4
Mileski, W.5
Davey, M.6
Leamon, J.H.7
Johnson, K.8
Milgrew, M.J.9
Edwards, M.10
Hoon, J.11
Simons, J.F.12
Marran, D.13
Myers, J.W.14
Davidson, J.F.15
Branting, A.16
Nobile, J.R.17
Puc, B.P.18
Light, D.19
Clark, T.A.20
Huber, M.21
Branciforte, J.T.22
Stoner, I.B.23
Cawley, S.E.24
Lyons, M.25
Fu, Y.26
Homer, N.27
Sedova, M.28
Miao, X.29
Reed, B.30
Sabina, J.31
Feierstein, E.32
Schorn, M.33
Alanjary, M.34
Dimalanta, E.35
Dressman, D.36
Kasinskas, R.37
Sokolsky, T.38
Fidanza, J.A.39
Namsaraev, E.40
McKernan, K.J.41
Williams, A.J.42
Roth, G.T.43
Bustillo, J.44
more..
-
34
-
-
84866894408
-
Comprehensive genomic characterization of squamous cell lung cancers
-
The Cancer Genome Atlas Research Network
-
The Cancer Genome Atlas Research Network (2012a) Comprehensive genomic characterization of squamous cell lung cancers. Nature 489: 519-525.
-
(2012)
Nature
, vol.489
, pp. 519-525
-
-
-
35
-
-
84863922124
-
Comprehensive molecular characterization of human colon and rectal cancer
-
The Cancer Genome Atlas Research Network
-
The Cancer Genome Atlas Research Network (2012b) Comprehensive molecular characterization of human colon and rectal cancer. Nature 487: 330-337.
-
(2012)
Nature
, vol.487
, pp. 330-337
-
-
-
36
-
-
84877028141
-
Comprehensive molecular portraits of human breast tumours
-
The Cancer Genome Atlas Research Network
-
The Cancer Genome Atlas Research Network (2012c) Comprehensive molecular portraits of human breast tumours. Nature 490: 61-70.
-
(2012)
Nature
, vol.490
, pp. 61-70
-
-
-
37
-
-
84875634162
-
Integrative genomics viewer (IGV): High-performance genomics data visualization and exploration
-
ThorvaldsdÓ ttir H, Robinson JT, Mesirov JP (2013) Integrative genomics viewer (IGV):high-performance genomics data visualization and exploration. Brief Bioinform 14: 178-192.
-
(2013)
Brief Bioinform
, vol.14
, pp. 178-192
-
-
Thorvaldsdóttir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
38
-
-
80455173836
-
Nanopore sensors for nucleic acid analysis
-
Venkatesan BM, Bashir R (2011) Nanopore sensors for nucleic acid analysis. Nat Nanotechnol 6: 615-624.
-
(2011)
Nat Nanotechnol
, vol.6
, pp. 615-624
-
-
Venkatesan, B.M.1
Bashir, R.2
-
39
-
-
77956534324
-
ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
-
Wang K, Li M, Hakonarson H (2010) ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nuc Acids Res 38(16): e164.
-
(2010)
Nuc Acids Res
, vol.38
, Issue.16
-
-
Wang, K.1
Li, M.2
Hakonarson, H.3
-
40
-
-
77956690576
-
A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data
-
Yau C, Mouradov D, Jorissen RN, Colella S, Mirza G, Steers G, Harris A, Ragoussis J, Sieber O, Holmes CC (2010) A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data. Genome Biol 11: R92.
-
(2010)
Genome Biol
, vol.11
-
-
Yau, C.1
Mouradov, D.2
Jorissen, R.N.3
Colella, S.4
Mirza, G.5
Steers, G.6
Harris, A.7
Ragoussis, J.8
Sieber, O.9
Holmes, C.C.10
-
41
-
-
70350694443
-
Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
-
Ye K, Schulz MH, Long Q, Apweiler R, Ning ZM (2009) Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics 25: 2865-2871.
-
(2009)
Bioinformatics
, vol.25
, pp. 2865-2871
-
-
Ye, K.1
Schulz, M.H.2
Long, Q.3
Apweiler, R.4
Ning, Z.M.5
-
42
-
-
40049099220
-
The T790M mutation in EGFR kinase causes drug resistance by increasing the affinty for ATP
-
Yun CH, Mengwasser KE, Torns AV, Woo MS, Greulich H, Wong KK, Meyerson M, Eck MJ (2008) The T790M mutation in EGFR kinase causes drug resistance by increasing the affinty for ATP. Proc Natl Acad Sci USA 105: 2070-2075.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 2070-2075
-
-
Yun, C.H.1
Mengwasser, K.E.2
Torns, A.V.3
Woo, M.S.4
Greulich, H.5
Wong, K.K.6
Meyerson, M.7
Eck, M.J.8
|