-
1
-
-
33747192713
-
Control and design principles in biological mineralization
-
Addadi, L.; Weiner, S. Control and design principles in biological mineralization Angew. Chem., Int. Ed. Engl. 1992, 31, 153-169
-
(1992)
Angew. Chem., Int. Ed. Engl.
, vol.31
, pp. 153-169
-
-
Addadi, L.1
Weiner, S.2
-
2
-
-
0027641056
-
Effect of the conformation and orientation of adsorbed fibronectin on endothelial cell spreading and the strength of adhesion
-
Juliano, D. J.; Saavedra, S. S.; Truskey, G. A. Effect of the conformation and orientation of adsorbed fibronectin on endothelial cell spreading and the strength of adhesion J. Biomed. Mater. Res. 1993, 27, 1103-1113
-
(1993)
J. Biomed. Mater. Res.
, vol.27
, pp. 1103-1113
-
-
Juliano, D.J.1
Saavedra, S.S.2
Truskey, G.A.3
-
3
-
-
9144257407
-
Antifreeze proteins: Structures and mechanisms of function
-
Yeh, Y.; Feeney, R. E. Antifreeze proteins: Structures and mechanisms of function Chem. Rev. 1996, 96, 601-617
-
(1996)
Chem. Rev.
, vol.96
, pp. 601-617
-
-
Yeh, Y.1
Feeney, R.E.2
-
4
-
-
0033428813
-
Biomimetics: Materials fabrication through biology
-
Sarikaya, M. Biomimetics: Materials fabrication through biology Proc. Natl. Acad. Sci USA 1999, 96, 14183-14185
-
(1999)
Proc. Natl. Acad. Sci USA
, vol.96
, pp. 14183-14185
-
-
Sarikaya, M.1
-
5
-
-
0141780801
-
Molecular biomimetics: Nanotechnology through biology
-
Sarikaya, M.; Tamerler, C.; Jen, A. K.-Y.; Schulten, K.; Baneyx, F. Molecular biomimetics: Nanotechnology through biology Nat. Mater. 2003, 3, 577-585
-
(2003)
Nat. Mater.
, vol.3
, pp. 577-585
-
-
Sarikaya, M.1
Tamerler, C.2
Jen, A.K.-Y.3
Schulten, K.4
Baneyx, F.5
-
6
-
-
1342302795
-
The interaction of proteins with solid surfaces
-
Gray, J. J. The interaction of proteins with solid surfaces Curr. Opin. Struct. Biol. 2004, 14, 110-115
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 110-115
-
-
Gray, J.J.1
-
7
-
-
0026669435
-
Engineered iron oxide-adhesion mutants of the Escherichia coli phage lambda receptor
-
Brown, S. Engineered iron oxide-adhesion mutants of the Escherichia coli phage lambda receptor Proc. Natl. Acad. Sci. U.S.A. 1992, 89, 8651-8655
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 8651-8655
-
-
Brown, S.1
-
8
-
-
0030198861
-
Monoclonal antibody recognition of cholesterol monohydrate crystal faces
-
Perl-Treves, D.; Kessler, N.; Izhaky, D.; Addadi, L. Monoclonal antibody recognition of cholesterol monohydrate crystal faces Chem. Biol. 1996, 3, 567-577
-
(1996)
Chem. Biol.
, vol.3
, pp. 567-577
-
-
Perl-Treves, D.1
Kessler, N.2
Izhaky, D.3
Addadi, L.4
-
9
-
-
0034625319
-
A genetic analysis of crystal growth
-
Brown, S.; Sarikaya, M.; Johnson, E. A genetic analysis of crystal growth J. Mol. Biol. 2000, 299, 725-735
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 725-735
-
-
Brown, S.1
Sarikaya, M.2
Johnson, E.3
-
10
-
-
0034621827
-
Selection of peptides with semiconductor binding specificity for directed nanocrystal assembly
-
Whaley, S. R.; English, D. S.; Hu, E. L.; Barbara, P. F.; Belcher, A. M. Selection of peptides with semiconductor binding specificity for directed nanocrystal assembly Nature 2000, 405, 665-668
-
(2000)
Nature
, vol.405
, pp. 665-668
-
-
Whaley, S.R.1
English, D.S.2
Hu, E.L.3
Barbara, P.F.4
Belcher, A.M.5
-
11
-
-
33646577838
-
Virus-enabled synthesis and assembly of nanowires for lithium ion battery electrodes
-
Nam, K. T.; Kim, D.-W.; Yoo, P. J.; Chiang, C.-Y.; Meethong, N.; Hammond, P. T.; Chiang, Y.-M.; Belcher, A. M. Virus-enabled synthesis and assembly of nanowires for lithium ion battery electrodes Science 2006, 312, 885-888
-
(2006)
Science
, vol.312
, pp. 885-888
-
-
Nam, K.T.1
Kim, D.-W.2
Yoo, P.J.3
Chiang, C.-Y.4
Meethong, N.5
Hammond, P.T.6
Chiang, Y.-M.7
Belcher, A.M.8
-
12
-
-
33749652802
-
Antibody molecules discriminate between crystalline facets of a gallium arsenide semiconductor
-
Artzy-Schnirman, A.; Zahavi, E.; Yeger, H.; Rosenfeld, R.; Benhar, I.; Reiter, Y.; Sivan, U. Antibody molecules discriminate between crystalline facets of a gallium arsenide semiconductor Nano Lett. 2006, 6, 1870-1874
-
(2006)
Nano Lett.
, vol.6
, pp. 1870-1874
-
-
Artzy-Schnirman, A.1
Zahavi, E.2
Yeger, H.3
Rosenfeld, R.4
Benhar, I.5
Reiter, Y.6
Sivan, U.7
-
13
-
-
58449095946
-
Quartz binding peptides as molecular linkers towards fabricating multifunctional micropatterned substrates
-
Kacar, T.; Ray, J.; Gungormus, M.; Oren, E. E.; Tamerler, C.; Sarikaya, M. Quartz binding peptides as molecular linkers towards fabricating multifunctional micropatterned substrates Adv. Mater. 2009, 21, 295-299
-
(2009)
Adv. Mater.
, vol.21
, pp. 295-299
-
-
Kacar, T.1
Ray, J.2
Gungormus, M.3
Oren, E.E.4
Tamerler, C.5
Sarikaya, M.6
-
14
-
-
57349192100
-
Protein-and peptide-directed syntheses of inorganic materials
-
Dickerson, M.; Sandhage, K.; Naik, R. R. Protein-and peptide-directed syntheses of inorganic materials Chem. Rev. 2008, 108, 4935-4978
-
(2008)
Chem. Rev.
, vol.108
, pp. 4935-4978
-
-
Dickerson, M.1
Sandhage, K.2
Naik, R.R.3
-
15
-
-
63149094571
-
Nanopatterning peptides as bifunctional inks for templated assembly
-
Wei, J. H.; Kacar, T.; Tamerler, C.; Sarikaya, M.; Ginger, D. S. Nanopatterning peptides as bifunctional inks for templated assembly Small 2009, 689-693
-
(2009)
Small
, pp. 689-693
-
-
Wei, J.H.1
Kacar, T.2
Tamerler, C.3
Sarikaya, M.4
Ginger, D.S.5
-
16
-
-
77949557156
-
Bioassisted multi-nanoparticle patterning using single-layer peptide templates
-
Nochomovitz, R.; Amit, M.; Matmor, M.; Ashkenasy, N. Bioassisted multi-nanoparticle patterning using single-layer peptide templates Nanotechnology 2010, 21, 145305
-
(2010)
Nanotechnology
, vol.21
, pp. 145305
-
-
Nochomovitz, R.1
Amit, M.2
Matmor, M.3
Ashkenasy, N.4
-
17
-
-
79952910937
-
Organization of inorganic nanomaterials via programmable DNA self-assembly and peptide molecular recognition
-
Carter, J. D.; LaBean, T. H. Organization of inorganic nanomaterials via programmable DNA self-assembly and peptide molecular recognition ACS Nano 2011, 5, 2200-2205
-
(2011)
ACS Nano
, vol.5
, pp. 2200-2205
-
-
Carter, J.D.1
Labean, T.H.2
-
18
-
-
84859369755
-
Peptide-directed co-assembly of nanoprobes on multimaterial patterned solid surfaces
-
Hnilova, M.; So, C. R.; Oren, E. E.; Wilson, B. R.; Kacar, T.; Tamerler, C.; Sarikaya, M. Peptide-directed co-assembly of nanoprobes on multimaterial patterned solid surfaces Soft Matter 2012, 8, 4327-4334
-
(2012)
Soft Matter
, vol.8
, pp. 4327-4334
-
-
Hnilova, M.1
So, C.R.2
Oren, E.E.3
Wilson, B.R.4
Kacar, T.5
Tamerler, C.6
Sarikaya, M.7
-
19
-
-
67650106144
-
Directed self-immobilization of alkaline phosphatase on micro-patterned substrates via genetically fused metal-binding peptide
-
Kacar, T.; Zin, M. T.; So, C.; Wilson, B.; Ma, H.; Gul-Karaguler, N.; Jen, A. K.-Y.; Sarikaya, M.; Tamerler, C. Directed self-immobilization of alkaline phosphatase on micro-patterned substrates via genetically fused metal-binding peptide Biotechnol. Bioeng. 2009, 103, 696-705
-
(2009)
Biotechnol. Bioeng.
, vol.103
, pp. 696-705
-
-
Kacar, T.1
Zin, M.T.2
So, C.3
Wilson, B.4
Ma, H.5
Gul-Karaguler, N.6
Jen, A.K.-Y.7
Sarikaya, M.8
Tamerler, C.9
-
20
-
-
56449087021
-
Effect of molecular conformations on the adsorption behavior of gold-binding peptides
-
Hnilova, M.; Oren, E. E.; Seker, U. O. S.; Wilson, B. R.; Collino, S.; Evans, J. S.; Tamerler, C.; Sarikaya, M. Effect of molecular conformations on the adsorption behavior of gold-binding peptides Langmuir 2008, 24, 12440-12445
-
(2008)
Langmuir
, vol.24
, pp. 12440-12445
-
-
Hnilova, M.1
Oren, E.E.2
Seker, U.O.S.3
Wilson, B.R.4
Collino, S.5
Evans, J.S.6
Tamerler, C.7
Sarikaya, M.8
-
21
-
-
0031578972
-
Parallel tempering algorithm for conformational studies of biological molecules
-
Hansmann, U. H. E. Parallel tempering algorithm for conformational studies of biological molecules Chem. Phys. Lett. 1997, 281, 140-150
-
(1997)
Chem. Phys. Lett.
, vol.281
, pp. 140-150
-
-
Hansmann, U.H.E.1
-
22
-
-
0001616080
-
Replica-exchange molecular dynamics method for protein folding
-
Sugita, Y.; Okamoto, Y. Replica-exchange molecular dynamics method for protein folding Chem. Phys. Lett. 1999, 314, 141-151
-
(1999)
Chem. Phys. Lett.
, vol.314
, pp. 141-151
-
-
Sugita, Y.1
Okamoto, Y.2
-
23
-
-
66249119965
-
Molecular simulation of protein-surface interactions: Benefits, problems, solutions, and future directions
-
Latour, R. A. Molecular simulation of protein-surface interactions: Benefits, problems, solutions, and future directions Biointerphases 2008, 3, FC2-FC12
-
(2008)
Biointerphases
, vol.3
-
-
Latour, R.A.1
-
24
-
-
77950662629
-
Protein-surface interactions: Challenging experiments and computations
-
Cohavi, O. Protein-surface interactions: Challenging experiments and computations J. Mol. Rec. 2009, 23, 259-262
-
(2009)
J. Mol. Rec.
, vol.23
, pp. 259-262
-
-
Cohavi, O.1
-
25
-
-
1842583284
-
Adsorption modes of cysteine on Au(111): Thiolate, amino-thiolate, disulfide
-
Di Felice, R.; Selloni, A. Adsorption modes of cysteine on Au(111): Thiolate, amino-thiolate, disulfide J. Chem. Phys. 2004, 120, 4906-4914
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 4906-4914
-
-
Di Felice, R.1
Selloni, A.2
-
26
-
-
33748556866
-
Adsorption and in situ scanning tunneling microscopy of cysteine on Au (111): Structure, energy, and tunneling contrasts
-
Nazmutdinov, R. R.; Zhang, J. D.; Zinkicheva, T. T.; Manyurov, I. R.; Ulstrup, J. Adsorption and in situ scanning tunneling microscopy of cysteine on Au (111): Structure, energy, and tunneling contrasts Langmuir 2006, 22, 7556-7567
-
(2006)
Langmuir
, vol.22
, pp. 7556-7567
-
-
Nazmutdinov, R.R.1
Zhang, J.D.2
Zinkicheva, T.T.3
Manyurov, I.R.4
Ulstrup, J.5
-
27
-
-
39749192202
-
Phenylalanine near inorganic surfaces: Conformational statistics vs specific chemistry
-
Ghiringhelli, L. M.; Delle Site, L. Phenylalanine near inorganic surfaces: conformational statistics vs specific chemistry J. Am. Chem. Soc. 2008, 130, 2634-2638
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 2634-2638
-
-
Ghiringhelli, L.M.1
Delle Site, L.2
-
28
-
-
53549123870
-
Competing adsorption between hydrated peptides and water onto metal surfaces: From electronic to conformational properties
-
Ghiringhelli, L. M.; Hess, B.; van der Vegt, N. F.; Delle Site, L. Competing adsorption between hydrated peptides and water onto metal surfaces: From electronic to conformational properties J. Am. Chem. Soc. 2008, 130, 13460-13464
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 13460-13464
-
-
Ghiringhelli, L.M.1
Hess, B.2
Van Der Vegt, N.F.3
Delle Site, L.4
-
29
-
-
67649187881
-
Toward understanding amino acid adsorption at metallic interfaces: A density functional theory study
-
Hong, G.; Heinz, H.; Naik, R. R.; Farmer, B. L.; Pachter, R. Toward understanding amino acid adsorption at metallic interfaces: A density functional theory study ACS Appl. Mater. Interface 2009, 1, 388-392
-
(2009)
ACS Appl. Mater. Interface
, vol.1
, pp. 388-392
-
-
Hong, G.1
Heinz, H.2
Naik, R.R.3
Farmer, B.L.4
Pachter, R.5
-
30
-
-
52649166799
-
Unraveling the interaction between histidine side chain and the Au(111) surface: A DFT study
-
Iori, F.; Corni, S.; Di Felice, R. Unraveling the interaction between histidine side chain and the Au(111) surface: A DFT study J. Phys. Chem. C 2008, 112, 13540-13545
-
(2008)
J. Phys. Chem. C
, vol.112
, pp. 13540-13545
-
-
Iori, F.1
Corni, S.2
Di Felice, R.3
-
31
-
-
77950830266
-
Hydroxyl-rich β-sheet adhesion to the gold surface in water by first-principle simulations
-
Calzolari, A.; Cicero, G.; Cavazzoni, C.; Di Felice, R.; Catellani, A.; Corni, S. Hydroxyl-rich β-sheet adhesion to the gold surface in water by first-principle simulations J. Am. Chem. Soc. 2010, 132, 4790-4795
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 4790-4795
-
-
Calzolari, A.1
Cicero, G.2
Cavazzoni, C.3
Di Felice, R.4
Catellani, A.5
Corni, S.6
-
32
-
-
0036392715
-
Genetically engineered gold-binding polypeptides: Structure prediction and molecular dynamics
-
Braun, R.; Sarikaya, M.; Schulten, K. Genetically engineered gold-binding polypeptides: structure prediction and molecular dynamics J. Biomater. Sci. 2002, 13, 747-757
-
(2002)
J. Biomater. Sci.
, vol.13
, pp. 747-757
-
-
Braun, R.1
Sarikaya, M.2
Schulten, K.3
-
33
-
-
0141862119
-
MD simulation of a plastocyanin mutant adsorbed onto a gold surface
-
Bizzarri, A. R.; Costantini, G.; Cannistraro, S. MD simulation of a plastocyanin mutant adsorbed onto a gold surface Biophys. Chem. 2003, 106, 111-123
-
(2003)
Biophys. Chem.
, vol.106
, pp. 111-123
-
-
Bizzarri, A.R.1
Costantini, G.2
Cannistraro, S.3
-
34
-
-
34547838173
-
Electronic coupling between azurin and gold at different protein/substrate orientations
-
Setty-Venkat, A.; Corni, S.; Di Felice, R. Electronic coupling between azurin and gold at different protein/substrate orientations Small 2007, 8, 1431-1437
-
(2007)
Small
, vol.8
, pp. 1431-1437
-
-
Setty-Venkat, A.1
Corni, S.2
Di Felice, R.3
-
35
-
-
67650457696
-
Nature of molecular interactions of peptides with gold, palladium, and Pd-Au bimetal surfaces in aqueous solution
-
Heinz, H.; Farmer, B. L.; Pandey, R. B.; Slocik, J. M.; Patnaik, S. S.; Pachter, R.; Naik, R. R. Nature of molecular interactions of peptides with gold, palladium, and Pd-Au bimetal surfaces in aqueous solution J. Am. Chem. Soc. 2009, 131, 9704-9714
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 9704-9714
-
-
Heinz, H.1
Farmer, B.L.2
Pandey, R.B.3
Slocik, J.M.4
Patnaik, S.S.5
Pachter, R.6
Naik, R.R.7
-
36
-
-
80051589789
-
Crystallographic recognition controls peptide binding for bio-based nanomaterials
-
Coppage, R.; Slocik, J. M.; Briggs, B. D.; Frenkel, A. I.; Heinz, H.; Naik, R. R.; Knecht, M. R. Crystallographic recognition controls peptide binding for bio-based nanomaterials J. Am. Chem. Soc. 2011, 133, 12346-12349
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 12346-12349
-
-
Coppage, R.1
Slocik, J.M.2
Briggs, B.D.3
Frenkel, A.I.4
Heinz, H.5
Naik, R.R.6
Knecht, M.R.7
-
37
-
-
56549109784
-
Accurate simulation of surfaces and interfaces of face-centered cubic metals using 12-6 and 9-6 Lennard-Jones potentials
-
Heinz, H.; Vaia, R. A.; Farmer, B. L.; Naik, R. R. Accurate simulation of surfaces and interfaces of face-centered cubic metals using 12-6 and 9-6 Lennard-Jones potentials J. Phys. Chem. C 2008, 112, 17281-17290
-
(2008)
J. Phys. Chem. C
, vol.112
, pp. 17281-17290
-
-
Heinz, H.1
Vaia, R.A.2
Farmer, B.L.3
Naik, R.R.4
-
38
-
-
68849090298
-
Investigating the specificity of peptide adsorption on gold using molecular dynamics simulations
-
Vila Verde, A.; Acres, J. M.; Maranas, J. K. Investigating the specificity of peptide adsorption on gold using molecular dynamics simulations Biomacromolecules 2009, 10, 2118-2128
-
(2009)
Biomacromolecules
, vol.10
, pp. 2118-2128
-
-
Vila Verde, A.1
Acres, J.M.2
Maranas, J.K.3
-
39
-
-
79958118196
-
Adsorption of homopolypeptides on gold investigated using atomistic molecular dynamics
-
Vila Verde, A.; Beltramo, P. J.; Maranas, J. K. Adsorption of homopolypeptides on gold investigated using atomistic molecular dynamics Langmuir 2011, 27, 5918-5926
-
(2011)
Langmuir
, vol.27
, pp. 5918-5926
-
-
Vila Verde, A.1
Beltramo, P.J.2
Maranas, J.K.3
-
40
-
-
84862969684
-
The influence of amino acid sequence and functionality on the binding process of peptides onto gold surfaces
-
Yu, J.; Becker, M. L.; Carri, G. A. The influence of amino acid sequence and functionality on the binding process of peptides onto gold surfaces Langmuir 2012, 28, 1408-1417
-
(2012)
Langmuir
, vol.28
, pp. 1408-1417
-
-
Yu, J.1
Becker, M.L.2
Carri, G.A.3
-
41
-
-
0030969778
-
Metal-recognition by repeating polypeptides
-
Brown, S. Metal-recognition by repeating polypeptides Nat. Biotechnol. 1997, 15, 269-272
-
(1997)
Nat. Biotechnol.
, vol.15
, pp. 269-272
-
-
Brown, S.1
-
42
-
-
33749993224
-
Materials specificity and directed assembly of a gold-binding peptide
-
Tamerler, C.; Duman, M.; Oren, E. E.; Gungormus, M.; Xiong, X.; Kacar, T.; Parviz, B. A.; Sarikaya, M. Materials specificity and directed assembly of a gold-binding peptide Small 2007, 2, 1372-1378
-
(2007)
Small
, vol.2
, pp. 1372-1378
-
-
Tamerler, C.1
Duman, M.2
Oren, E.E.3
Gungormus, M.4
Xiong, X.5
Kacar, T.6
Parviz, B.A.7
Sarikaya, M.8
-
43
-
-
4043107684
-
Molecular characterization of a prokaryotic polypeptide sequence that catalyzes Au crystal formation
-
Kulp, J. L.; Sarikaya, M.; Evans, J. S. Molecular characterization of a prokaryotic polypeptide sequence that catalyzes Au crystal formation J. Mater. Chem. 2004, 14, 2325-2332
-
(2004)
J. Mater. Chem.
, vol.14
, pp. 2325-2332
-
-
Kulp, J.L.1
Sarikaya, M.2
Evans, J.S.3
-
44
-
-
62349101755
-
Adsorption of peptides (A3, Flg, Pd2, Pd4) on gold and palladium surfaces by a coarse-grained Monte Carlo simulation
-
Pandey, R.; Heinz, H.; Feng, J.; Farmer, B. L.; Slocik, J. M.; Drummy, L. F.; Naik, R. R. Adsorption of peptides (A3, Flg, Pd2, Pd4) on gold and palladium surfaces by a coarse-grained Monte Carlo simulation Phys. Chem. Chem. Phys. 2009, 11, 1989-2001
-
(2009)
Phys. Chem. Chem. Phys.
, vol.11
, pp. 1989-2001
-
-
Pandey, R.1
Heinz, H.2
Feng, J.3
Farmer, B.L.4
Slocik, J.M.5
Drummy, L.F.6
Naik, R.R.7
-
45
-
-
79951860563
-
Adsorption mechanism of single amino acid and surfactant molecules to Au {111} surfaces in aqueous solution: Design rules for metal-binding molecules
-
Feng, J.; Pandey, R. B.; Berry, R. J.; Farmer, B. L.; Naik, R. R.; Heinz, H. Adsorption mechanism of single amino acid and surfactant molecules to Au {111} surfaces in aqueous solution: Design rules for metal-binding molecules Soft Matter 2011, 7, 2113-2120
-
(2011)
Soft Matter
, vol.7
, pp. 2113-2120
-
-
Feng, J.1
Pandey, R.B.2
Berry, R.J.3
Farmer, B.L.4
Naik, R.R.5
Heinz, H.6
-
46
-
-
77954562476
-
Interaction of amino acids with the Au(111) surface: Adsorption free energies from molecular dynamics simulations
-
Hoefling, M.; Iori, F.; Corni, S.; Gottschalk, K. E. Interaction of amino acids with the Au(111) surface: Adsorption free energies from molecular dynamics simulations Langmuir 2010, 26, 8347-8351
-
(2010)
Langmuir
, vol.26
, pp. 8347-8351
-
-
Hoefling, M.1
Iori, F.2
Corni, S.3
Gottschalk, K.E.4
-
47
-
-
77953183768
-
The conformations of amino acids on a gold(111) surface
-
Hoefling, M.; Iori, F.; Corni, S.; Gottschalk, K. E. The conformations of amino acids on a gold(111) surface ChemPhysChem 2010, 11, 1763-1767
-
(2010)
ChemPhysChem
, vol.11
, pp. 1763-1767
-
-
Hoefling, M.1
Iori, F.2
Corni, S.3
Gottschalk, K.E.4
-
48
-
-
77950684157
-
Interplay of sequence, conformation, and binding at the peptide-titania interface as mediated by water
-
Skelton, A. A.; Liang, T.; Walsh, T. R. Interplay of sequence, conformation, and binding at the peptide-titania interface as mediated by water ACS Appl. Mater. Interfaces 2009, 1, 1482-1491
-
(2009)
ACS Appl. Mater. Interfaces
, vol.1
, pp. 1482-1491
-
-
Skelton, A.A.1
Liang, T.2
Walsh, T.R.3
-
49
-
-
79951619727
-
Free energy calculations of the adsorption of amino acid analogues at the aqueous titania interface
-
Monti, S.; Walsh, T. R. Free energy calculations of the adsorption of amino acid analogues at the aqueous titania interface J. Phys. Chem. C 2010, 114, 22197-22206
-
(2010)
J. Phys. Chem. C
, vol.114
, pp. 22197-22206
-
-
Monti, S.1
Walsh, T.R.2
-
50
-
-
77954250553
-
Probing the molecular mechanisms of quartz-binding peptides
-
Oren, E. E.; Notman, R.; Kim, I. W.; Evans, J. S.; Walsh, T. R.; Samudrala, R.; Tamerler, C.; Sarikaya, M. Probing the molecular mechanisms of quartz-binding peptides Langmuir 2010, 26, 11003-11009
-
(2010)
Langmuir
, vol.26
, pp. 11003-11009
-
-
Oren, E.E.1
Notman, R.2
Kim, I.W.3
Evans, J.S.4
Walsh, T.R.5
Samudrala, R.6
Tamerler, C.7
Sarikaya, M.8
-
51
-
-
35948969909
-
Structure prediction of protein-solid surface interactions reveals a molecular recognition motif of statherin for hydroxyapatite
-
Makrodimitris, K.; Masica, D. L.; Kim, E. T.; Gray, J. J. Structure prediction of protein-solid surface interactions reveals a molecular recognition motif of statherin for hydroxyapatite J. Am. Chem. Soc. 2007, 129, 13713
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 13713
-
-
Makrodimitris, K.1
Masica, D.L.2
Kim, E.T.3
Gray, J.J.4
-
52
-
-
78650160944
-
Microscopic mechanism of specific peptide adhesion to semiconductor substrates
-
Bachmann, M.; Goede, K.; Beck-Sickinger, A. G.; Grundmann, M.; Irbäck, A.; Janke, W. Microscopic mechanism of specific peptide adhesion to semiconductor substrates Angew. Chem., Int. Ed. 2010, 49, 9530-9533
-
(2010)
Angew. Chem., Int. Ed.
, vol.49
, pp. 9530-9533
-
-
Bachmann, M.1
Goede, K.2
Beck-Sickinger, A.G.3
Grundmann, M.4
Irbäck, A.5
Janke, W.6
-
53
-
-
67649216262
-
Modeling the binding affinity of peptides for graphitic surfaces. Influences of aromatic content and interfacial shape
-
Tomasio, S. M.; Walsh, T. R. Modeling the binding affinity of peptides for graphitic surfaces. Influences of aromatic content and interfacial shape J. Phys. Chem. C 2009, 113, 8778-8785
-
(2009)
J. Phys. Chem. C
, vol.113
, pp. 8778-8785
-
-
Tomasio, S.M.1
Walsh, T.R.2
-
54
-
-
33947397117
-
Atomistic modelling of the interaction between peptides and carbon nanotubes
-
Tomasio, S. M.; Walsh, T. R. Atomistic modelling of the interaction between peptides and carbon nanotubes Mol. Phys. 2007, 105, 221-229
-
(2007)
Mol. Phys.
, vol.105
, pp. 221-229
-
-
Tomasio, S.M.1
Walsh, T.R.2
-
55
-
-
20344405234
-
Differential adhesion of amino acids to inorganic surfaces
-
Willett, R. L.; Baldwin, K. W.; West, K. W.; Pfeiffer, L. N. Differential adhesion of amino acids to inorganic surfaces Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 7817-22
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 7817-7822
-
-
Willett, R.L.1
Baldwin, K.W.2
West, K.W.3
Pfeiffer, L.N.4
-
56
-
-
23144455709
-
Design criteria for engineering inorganic material-specific peptides
-
Peelle, B. R.; Krauland, E. M.; Wittrup, K. D.; Belcher, A. M. Design criteria for engineering inorganic material-specific peptides Langmuir 2005, 21, 6929-6933
-
(2005)
Langmuir
, vol.21
, pp. 6929-6933
-
-
Peelle, B.R.1
Krauland, E.M.2
Wittrup, K.D.3
Belcher, A.M.4
-
57
-
-
78751611891
-
A quantitative, real-time assessment of binding of peptides and proteins to gold surfaces
-
Cohavi, O.; Reichmann, D.; Abramovich, R.; Tesler, A. B.; Bellapadrona, G.; Kokh, D. B.; Wade, R. C.; Vaskevich, A.; Rubinstein, I.; Schreiber, G. A quantitative, real-time assessment of binding of peptides and proteins to gold surfaces Chem.-Eur. J. 2011, 17, 1327-1336
-
(2011)
Chem. - Eur. J.
, vol.17
, pp. 1327-1336
-
-
Cohavi, O.1
Reichmann, D.2
Abramovich, R.3
Tesler, A.B.4
Bellapadrona, G.5
Kokh, D.B.6
Wade, R.C.7
Vaskevich, A.8
Rubinstein, I.9
Schreiber, G.10
-
58
-
-
46449115547
-
Including image charge effects in the molecular dynamics
-
Iori, F.; Corni, S. Including image charge effects in the molecular dynamics J. Comput. Chem. 2008, 29, 1656-1666
-
(2008)
J. Comput. Chem.
, vol.29
, pp. 1656-1666
-
-
Iori, F.1
Corni, S.2
-
59
-
-
67650159736
-
GolP: An atomistic force-field to describe the interaction of proteins with Au (111) surfaces in water
-
Iori, F.; Di Felice, R.; Molinari, E.; Corni, S. GolP: An atomistic force-field to describe the interaction of proteins with Au (111) surfaces in water J. Comput. Chem. 2009, 30, 1465-1476
-
(2009)
J. Comput. Chem.
, vol.30
, pp. 1465-1476
-
-
Iori, F.1
Di Felice, R.2
Molinari, E.3
Corni, S.4
-
60
-
-
36448953061
-
A novel knowledge-based approach to design inorganic-binding peptides
-
Oren, E. E.; Tamerler, C.; Sahin, D.; Hnilova, M.; Seker, U. O. S.; Sarikaya, M.; Samudrala, R. A novel knowledge-based approach to design inorganic-binding peptides Bioinformatics 2007, 23, 2816-2822
-
(2007)
Bioinformatics
, vol.23
, pp. 2816-2822
-
-
Oren, E.E.1
Tamerler, C.2
Sahin, D.3
Hnilova, M.4
Seker, U.O.S.5
Sarikaya, M.6
Samudrala, R.7
-
61
-
-
68949107624
-
Secondary structure propensities in peptide folding simulations: A systematic comparison of molecular mechanics interaction schemes
-
Matthes, D.; de Groot, B. L. Secondary structure propensities in peptide folding simulations: A systematic comparison of molecular mechanics interaction schemes Biophys. J. 2009, 97, 599-608
-
(2009)
Biophys. J.
, vol.97
, pp. 599-608
-
-
Matthes, D.1
De Groot, B.L.2
-
62
-
-
33645941402
-
The OPLS potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin
-
Jorgensen, W. L.; Tirado-Rives, J. The OPLS potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin J. Am. Chem. Soc. 1988, 110, 1657-1666
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 1657-1666
-
-
Jorgensen, W.L.1
Tirado-Rives, J.2
-
63
-
-
0035909921
-
The free energy landscape for beta hairpin folding in explicit water
-
Zhou, R.; Berne, B. J.; Germain, R. The free energy landscape for beta hairpin folding in explicit water Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 14931-14936
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 14931-14936
-
-
Zhou, R.1
Berne, B.J.2
Germain, R.3
-
64
-
-
77952378812
-
ProMetCS: An atomistic force field for modeling protein-metal surface interactions in a continuum aqueous solvent
-
Kokh, D.; Corni, S.; Winn, P.; Hoefling, M.; Gottschalk, K.-E.; Wade, R. C. ProMetCS: An atomistic force field for modeling protein-metal surface interactions in a continuum aqueous solvent J. Chem. Theory Comp. 2010, 6, 1753-1768
-
(2010)
J. Chem. Theory Comp.
, vol.6
, pp. 1753-1768
-
-
Kokh, D.1
Corni, S.2
Winn, P.3
Hoefling, M.4
Gottschalk, K.-E.5
Wade, R.C.6
-
65
-
-
0021481142
-
Wettability of clean metal surfaces
-
Schrader, M. E. Wettability of clean metal surfaces J. Colloid Interface Sci. 1984, 100, 372-380
-
(1984)
J. Colloid Interface Sci.
, vol.100
, pp. 372-380
-
-
Schrader, M.E.1
-
66
-
-
84874906318
-
GolP-CHARMM: First-Principles Based Force Fields for the Interaction of Proteins with Au(111) and Au(100)
-
Wright, L. B.; Rodger, P. M.; Corni, S.; Walsh, T. R. GolP-CHARMM: First-Principles Based Force Fields for the Interaction of Proteins with Au(111) and Au(100) J. Chem. Theory Comp. 2013, 9, 1616-1630
-
(2013)
J. Chem. Theory Comp.
, vol.9
, pp. 1616-1630
-
-
Wright, L.B.1
Rodger, P.M.2
Corni, S.3
Walsh, T.R.4
-
67
-
-
41549127613
-
A temperature predictor for parallel tempering simulations
-
Patriksson, A.; van der Spoel, D. A temperature predictor for parallel tempering simulations Phys. Chem. Chem. Phys. 2008, 10, 2073-2077; see also http://folding.bmc.uu.se/remd/index.php.
-
(2008)
Phys. Chem. Chem. Phys.
, vol.10
, pp. 2073-2077
-
-
Patriksson, A.1
Van Der Spoel, D.2
-
68
-
-
84883187527
-
-
TINKER Version 4.2 June 2004 - Software Tools for Molecular Design. Washington University: St. Louis, MO.
-
TINKER Version 4.2 June 2004-Software Tools for Molecular Design. Washington University: St. Louis, MO, http://dasher.wustl.edu/tinker/.
-
-
-
-
69
-
-
0033556236
-
Peptide folding: When simulation meets experiment
-
Daura, X.; Gademann, K.; Jaun, B.; Seebach, D.; Van Gunsteren, W. F.; Mark, A. E. Peptide folding: When simulation meets experiment Angew. Chem., Int. Ed. 1999, 38, 236-240
-
(1999)
Angew. Chem., Int. Ed.
, vol.38
, pp. 236-240
-
-
Daura, X.1
Gademann, K.2
Jaun, B.3
Seebach, D.4
Van Gunsteren, W.F.5
Mark, A.E.6
-
70
-
-
46249092554
-
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
Hess, B.; Kutzner, C.; van der Spoel, D.; Lindahl, E. GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation J. Chem. Theory Comp. 2008, 4, 435-447
-
(2008)
J. Chem. Theory Comp.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
71
-
-
61849154174
-
Calculation of adsorption free energy for solute-surface interactions using biased replica-exchange molecular dynamics
-
Wang, F.; Stuart, S. J.; Latour, R. A. Calculation of adsorption free energy for solute-surface interactions using biased replica-exchange molecular dynamics BioInterphases 2008, 3, 9-18
-
(2008)
BioInterphases
, vol.3
, pp. 9-18
-
-
Wang, F.1
Stuart, S.J.2
Latour, R.A.3
-
72
-
-
36049046635
-
An improved replica-exchange sampling method: Temperature intervals with global energy reassignment
-
Li, X. F.; O'Brien, C. P.; Collier, G.; Vellore, N. A.; Wang, F.; Latour, R. A.; Bruce, D. A.; Stuart, S. J. An improved replica-exchange sampling method: Temperature intervals with global energy reassignment J. Chem. Phys. 2009, 127, 164116-10
-
(2009)
J. Chem. Phys.
, vol.127
, pp. 164116-164210
-
-
Li, X.F.1
O'Brien, C.P.2
Collier, G.3
Vellore, N.A.4
Wang, F.5
Latour, R.A.6
Bruce, D.A.7
Stuart, S.J.8
-
73
-
-
65549124993
-
TIGER2: An improved algorithm for temperature intervals with global exchange of replicas
-
Li, X. F.; Latour, R. A.; Stuart, S. J. TIGER2: An improved algorithm for temperature intervals with global exchange of replicas J. Chem. Phys. 2009, 130, 174106-9
-
(2009)
J. Chem. Phys.
, vol.130
, pp. 174106-174109
-
-
Li, X.F.1
Latour, R.A.2
Stuart, S.J.3
-
75
-
-
25444481354
-
Replica exchange with solute tempering: A method for sampling biological systems in explicit water
-
Liu, P.; Kim, B.; Friesner, R. A.; Berne, B. J. Replica exchange with solute tempering: A method for sampling biological systems in explicit water Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 13749-13754
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 13749-13754
-
-
Liu, P.1
Kim, B.2
Friesner, R.A.3
Berne, B.J.4
-
76
-
-
84856446078
-
Specific material recognition by small peptides mediated by the interfacial solvent structure
-
Scheinder, J.; Colombi-Ciacchi, L. Specific material recognition by small peptides mediated by the interfacial solvent structure J. Am. Chem. Soc. 2012, 134, 2407-2413
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 2407-2413
-
-
Scheinder, J.1
Colombi-Ciacchi, L.2
-
77
-
-
84874587036
-
Free Energy of Adsorption for a Peptide at a Liquid/Solid Interface via Nonequilibrium Molecular Dynamics
-
Mijajlovic, M.; Penna, M. J.; Biggs, M. J. Free Energy of Adsorption for a Peptide at a Liquid/Solid Interface via Nonequilibrium Molecular Dynamics Langmuir 2013, 29, 2919-2926
-
(2013)
Langmuir
, vol.29
, pp. 2919-2926
-
-
Mijajlovic, M.1
Penna, M.J.2
Biggs, M.J.3
-
78
-
-
0028514996
-
Linearly Scalable Computation of Smooth Molecular Surfaces, IEEE Comp
-
Varshney, A.; Brooks, F. P.; Wright, W. V. Linearly Scalable Computation of Smooth Molecular Surfaces, IEEE Comp Graph. Appl. 1994, 14, 19-25
-
(1994)
Graph. Appl.
, vol.14
, pp. 19-25
-
-
Varshney, A.1
Brooks, F.P.2
Wright, W.V.3
-
79
-
-
0029878720
-
VMD - Visual Molecular Dynamics
-
Humphrey, W.; Dalke, A.; Schulten, K. VMD-Visual Molecular Dynamics J. Mol. Graph. 1996, 14.1, 33-38
-
(1996)
J. Mol. Graph.
, vol.141
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
80
-
-
84858440486
-
Fabrication of Hierarchical Hybrid Structures Using Bio-enabled Layer-by-Layer Self-Assembly
-
Hnilova, M.; Karaca, B. T.; Park, J.; Jia, C.; Wilson, B. R.; Sarikaya, M.; Tamerler, C. Fabrication of Hierarchical Hybrid Structures Using Bio-enabled Layer-by-Layer Self-Assembly Biotechnol. Bioeng. 2012, 109, 1120-1130
-
(2012)
Biotechnol. Bioeng.
, vol.109
, pp. 1120-1130
-
-
Hnilova, M.1
Karaca, B.T.2
Park, J.3
Jia, C.4
Wilson, B.R.5
Sarikaya, M.6
Tamerler, C.7
-
81
-
-
80054867042
-
Single-step fabrication of patterned gold film array by an engineered multi-functional peptide
-
Hnilova, M.; Khatayevic, D.; Carlson, A.; Oren, E. E.; Gresswell, C.; Zheng, S.; Ohuchi, F.; Sarikaya, M.; Tamerler, C. Single-step fabrication of patterned gold film array by an engineered multi-functional peptide J. Colloid Interface Sci. 2012, 365, 97-102
-
(2012)
J. Colloid Interface Sci.
, vol.365
, pp. 97-102
-
-
Hnilova, M.1
Khatayevic, D.2
Carlson, A.3
Oren, E.E.4
Gresswell, C.5
Zheng, S.6
Ohuchi, F.7
Sarikaya, M.8
Tamerler, C.9
-
82
-
-
84859369755
-
Peptide-directed co-assembly of nanoprobes on multimaterial patterned solid surfaces
-
Hnilova, M.; So, C. R.; Oren, E. E.; Wilson, B. R.; Kacar, T.; Tamerler, C.; Sarikaya, M. Peptide-directed co-assembly of nanoprobes on multimaterial patterned solid surfaces Soft Matter 2012, 8, 4327-4334
-
(2012)
Soft Matter
, vol.8
, pp. 4327-4334
-
-
Hnilova, M.1
So, C.R.2
Oren, E.E.3
Wilson, B.R.4
Kacar, T.5
Tamerler, C.6
Sarikaya, M.7
-
83
-
-
33748537017
-
Adsorption kinetics of an engineered gold binding peptide by surface plasmon resonance spectroscopy and a quartz crystal microbalance
-
Tamerler, C.; Oren, E. E.; Duman, M.; Venkatasubramanian, E.; Sarikaya, M. Adsorption kinetics of an engineered gold binding peptide by surface plasmon resonance spectroscopy and a quartz crystal microbalance Langmuir 2006, 22, 7712-7718
-
(2006)
Langmuir
, vol.22
, pp. 7712-7718
-
-
Tamerler, C.1
Oren, E.E.2
Duman, M.3
Venkatasubramanian, E.4
Sarikaya, M.5
-
84
-
-
38549180622
-
A chirality index for identifying protein secondary structures
-
Pietropaolo, A.; Muccioli, L.; Berardi, R.; Zannoni, C. A chirality index for identifying protein secondary structures Proteins 2008, 70, 667-677
-
(2008)
Proteins
, vol.70
, pp. 667-677
-
-
Pietropaolo, A.1
Muccioli, L.2
Berardi, R.3
Zannoni, C.4
-
86
-
-
75849126506
-
The structural basis of peptide-protein binding strategies
-
London, N.; Movshovitz-Attias, D.; Schueler-Furman, O. The structural basis of peptide-protein binding strategies Structure 2010, 18, 188-199
-
(2010)
Structure
, vol.18
, pp. 188-199
-
-
London, N.1
Movshovitz-Attias, D.2
Schueler-Furman, O.3
-
87
-
-
61549132259
-
Biological control on calcite crystallization by polysaccharides
-
Yang, M.; Stipp, S. L. S.; Harding, J. H. Biological control on calcite crystallization by polysaccharides Cryst. Growth Des. 2008, 8, 4066-4074
-
(2008)
Cryst. Growth Des.
, vol.8
, pp. 4066-4074
-
-
Yang, M.1
Stipp, S.L.S.2
Harding, J.H.3
-
88
-
-
77950872445
-
Computational Screening of Biomolecular Adsorption and Self-Assembly on Nanoscale Surfaces
-
Heinz, H. Computational Screening of Biomolecular Adsorption and Self-Assembly on Nanoscale Surfaces J. Comput. Chem. 2010, 31, 1564-1568
-
(2010)
J. Comput. Chem.
, vol.31
, pp. 1564-1568
-
-
Heinz, H.1
-
89
-
-
0001351515
-
Estimation of absolute and relative entropies of macromolecules using the covariance matrix
-
Schlitter, J. Estimation of absolute and relative entropies of macromolecules using the covariance matrix Chem. Phys. Lett. 1993, 215, 617-621
-
(1993)
Chem. Phys. Lett.
, vol.215
, pp. 617-621
-
-
Schlitter, J.1
-
90
-
-
0034323089
-
Absolute entropies from molecular dynamics simulation trajectories
-
Schaefer, H.; Mark, A. E.; van Gunsteren, W. F. Absolute entropies from molecular dynamics simulation trajectories J. Chem. Phys. 2000, 113, 7809-7817
-
(2000)
J. Chem. Phys.
, vol.113
, pp. 7809-7817
-
-
Schaefer, H.1
Mark, A.E.2
Van Gunsteren, W.F.3
-
91
-
-
0035314075
-
Entropy calculations on a reversibly folding peptide: Changes in solute free energy cannot explain folding behavior
-
Schaefer, H.; Daura, X.; Mark, A. E.; van Gunsteren, W. F. Entropy calculations on a reversibly folding peptide: Changes in solute free energy cannot explain folding behavior Proteins 2001, 43, 45-56
-
(2001)
Proteins
, vol.43
, pp. 45-56
-
-
Schaefer, H.1
Daura, X.2
Mark, A.E.3
Van Gunsteren, W.F.4
-
92
-
-
4344704080
-
Reassessing random-coil statistics in unfolded proteins
-
Fitzkee, N. C.; Rose, G. D. Reassessing random-coil statistics in unfolded proteins Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 12497-12502
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 12497-12502
-
-
Fitzkee, N.C.1
Rose, G.D.2
-
93
-
-
4143145167
-
10 residue folded peptide designed by segment statistics
-
Honda, S.; Yamasaki, K.; Sawada, Y.; Morii, H. 10 residue folded peptide designed by segment statistics Structure 2004, 12, 1507-1518
-
(2004)
Structure
, vol.12
, pp. 1507
-
-
Honda, S.1
Yamasaki, K.2
Sawada, Y.3
Morii, H.4
|