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Volumn , Issue , 2011, Pages 461-478

High-Throughput Sequencing

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EID: 84882885123     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1016/B978-0-12-382006-8.00027-X     Document Type: Chapter
Times cited : (3)

References (55)
  • 1
    • 0015885955 scopus 로고
    • Determination of the nucleotide sequence of a fragment of bacteriophage phiX 174 DNA
    • Ziff E.B., Sedat J.W., Galibert F. Determination of the nucleotide sequence of a fragment of bacteriophage phiX 174 DNA. Nat. New Biol. 1973, 241(106):34-37.
    • (1973) Nat. New Biol. , vol.241 , Issue.106 , pp. 34-37
    • Ziff, E.B.1    Sedat, J.W.2    Galibert, F.3
  • 2
    • 0015857921 scopus 로고
    • Isolation and sequence analysis of a ribosome-protected fragment from bacteriophage phiX 174 DNA
    • Robertson H.D., Barrell B.G., Weith H.L., Donelson J.E. Isolation and sequence analysis of a ribosome-protected fragment from bacteriophage phiX 174 DNA. Nat. New Biol. 1973, 241(106):38-40.
    • (1973) Nat. New Biol. , vol.241 , Issue.106 , pp. 38-40
    • Robertson, H.D.1    Barrell, B.G.2    Weith, H.L.3    Donelson, J.E.4
  • 3
    • 0015757986 scopus 로고
    • The nucleotide sequence of the lac operator
    • Gilbert W., Maxam A. The nucleotide sequence of the lac operator. Proc. Natl. Acad. Sci. USA 1973, 70(12):3581-3584.
    • (1973) Proc. Natl. Acad. Sci. USA , vol.70 , Issue.12 , pp. 3581-3584
    • Gilbert, W.1    Maxam, A.2
  • 4
    • 0015610720 scopus 로고
    • Use of DNA polymerase I primed by a synthetic oligonucleotide to determine a nucleotide sequence in phage fl DNA
    • Sanger F., Donelson J.E., Coulson A.R., Kossel H., Fischer D. Use of DNA polymerase I primed by a synthetic oligonucleotide to determine a nucleotide sequence in phage fl DNA. Proc. Natl. Acad. Sci. USA 1973, 70(4):1209-1213.
    • (1973) Proc. Natl. Acad. Sci. USA , vol.70 , Issue.4 , pp. 1209-1213
    • Sanger, F.1    Donelson, J.E.2    Coulson, A.R.3    Kossel, H.4    Fischer, D.5
  • 6
  • 7
    • 0019887220 scopus 로고
    • A system for shotgun DNA sequencing
    • PMCID: PMC326694
    • Messing J., Crea R., Seeburg P.H. A system for shotgun DNA sequencing. Nucleic Acids Res. 1981, 9(2):309-321. PMCID: PMC326694.
    • (1981) Nucleic Acids Res. , vol.9 , Issue.2 , pp. 309-321
    • Messing, J.1    Crea, R.2    Seeburg, P.H.3
  • 8
    • 0017801863 scopus 로고
    • Methylation of single-stranded DNA in vitro introduces new restriction endonuclease cleavage sites
    • Gronenborn B., Messing J. Methylation of single-stranded DNA in vitro introduces new restriction endonuclease cleavage sites. Nature 1978, 272(5651):375-377.
    • (1978) Nature , vol.272 , Issue.5651 , pp. 375-377
    • Gronenborn, B.1    Messing, J.2
  • 9
    • 2042437650 scopus 로고    scopus 로고
    • International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome
    • Lander E.S., Linton L.M., Birren B., Nusbaum C., Zody M.C., Baldwin J., et al. International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature 2001, 409(6822):860-921.
    • (2001) Nature , vol.409 , Issue.6822 , pp. 860-921
    • Lander, E.S.1    Linton, L.M.2    Birren, B.3    Nusbaum, C.4    Zody, M.C.5    Baldwin, J.6
  • 13
    • 0019877035 scopus 로고
    • Shotgun DNA sequencing using cloned DNase I-generated fragments
    • Anderson S. Shotgun DNA sequencing using cloned DNase I-generated fragments. Nucleic Acids Res. 1981, 9(13):3015-3027.
    • (1981) Nucleic Acids Res. , vol.9 , Issue.13 , pp. 3015-3027
    • Anderson, S.1
  • 14
    • 0019878343 scopus 로고
    • Analysis of transcription of the human Alu family ubiquitous repeating element by eukaryotic RNA polymerase III
    • Fuhrman S.A., Deininger P.L., LaPorte P., Friedmann T., Geiduschek E.P. Analysis of transcription of the human Alu family ubiquitous repeating element by eukaryotic RNA polymerase III. Nucleic Acids Res. 1981, 9(23):6439-6456.
    • (1981) Nucleic Acids Res. , vol.9 , Issue.23 , pp. 6439-6456
    • Fuhrman, S.A.1    Deininger, P.L.2    LaPorte, P.3    Friedmann, T.4    Geiduschek, E.P.5
  • 16
    • 0026558482 scopus 로고
    • Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome
    • Oda K., Yamato K., Ohta E., Nakamura Y., Takemura M., Nozato N., et al. Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome. J. Mol. Biol. 1992, 223(1):1-7.
    • (1992) J. Mol. Biol. , vol.223 , Issue.1 , pp. 1-7
    • Oda, K.1    Yamato, K.2    Ohta, E.3    Nakamura, Y.4    Takemura, M.5    Nozato, N.6
  • 17
    • 0027765716 scopus 로고
    • Potential virulence determinants in terminal regions of variola smallpox virus genome
    • Massung R.F., Esposito J.J., Liu L.I., Qi J., Utterback T.R., Knight J.C., et al. Potential virulence determinants in terminal regions of variola smallpox virus genome. Nature 1993, 366(6457):748-751.
    • (1993) Nature , vol.366 , Issue.6457 , pp. 748-751
    • Massung, R.F.1    Esposito, J.J.2    Liu, L.I.3    Qi, J.4    Utterback, T.R.5    Knight, J.C.6
  • 19
    • 0026754531 scopus 로고
    • Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes
    • Daniels D.L., Plunkett G., Burland V., Blattner F.R. Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes. Science 1992, 257(5071):771-778.
    • (1992) Science , vol.257 , Issue.5071 , pp. 771-778
    • Daniels, D.L.1    Plunkett, G.2    Burland, V.3    Blattner, F.R.4
  • 20
    • 0027219606 scopus 로고
    • Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes
    • Plunkett G., Burland V., Daniels D.L., Blattner F.R. Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. Nucleic Acids Res. 1993, 21(15):3391-3398.
    • (1993) Nucleic Acids Res. , vol.21 , Issue.15 , pp. 3391-3398
    • Plunkett, G.1    Burland, V.2    Daniels, D.L.3    Blattner, F.R.4
  • 21
    • 0027519504 scopus 로고
    • Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes
    • Blattner F.R., Burland V., Plunkett G., Sofia H.J., Daniels D.L. Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes. Nucleic Acids Res. 1993, 21(23):5408-5417.
    • (1993) Nucleic Acids Res. , vol.21 , Issue.23 , pp. 5408-5417
    • Blattner, F.R.1    Burland, V.2    Plunkett, G.3    Sofia, H.J.4    Daniels, D.L.5
  • 22
    • 0028356059 scopus 로고
    • Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes
    • Sofia H.J., Burland V., Daniels D.L., Plunkett G., Blattner F.R. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Nucleic Acids Res. 1994, 22(13):2576-2586.
    • (1994) Nucleic Acids Res. , vol.22 , Issue.13 , pp. 2576-2586
    • Sofia, H.J.1    Burland, V.2    Daniels, D.L.3    Plunkett, G.4    Blattner, F.R.5
  • 23
    • 0029073731 scopus 로고
    • Analysis of the Escherichia coli genome. VI. DNA sequence of the region from 92.8 through 100 minutes
    • Burland V., Plunkett G., Sofia H.J., Daniels D.L., Blattner F.R. Analysis of the Escherichia coli genome. VI. DNA sequence of the region from 92.8 through 100 minutes. Nucleic Acids Res. 1995, 23(12):2105-2119.
    • (1995) Nucleic Acids Res. , vol.23 , Issue.12 , pp. 2105-2119
    • Burland, V.1    Plunkett, G.2    Sofia, H.J.3    Daniels, D.L.4    Blattner, F.R.5
  • 24
    • 0027210404 scopus 로고
    • DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: Organizational symmetry around the origin of replication
    • Burland V., Plunkett G., Daniels D.L., Blattner F.R. DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: Organizational symmetry around the origin of replication. Genomics 1993, 16(3):551-561.
    • (1993) Genomics , vol.16 , Issue.3 , pp. 551-561
    • Burland, V.1    Plunkett, G.2    Daniels, D.L.3    Blattner, F.R.4
  • 26
    • 0023669069 scopus 로고
    • The physical map of the whole E. coli chromosome: Application of a new strategy for rapid analysis and sorting of a large genomic library
    • Kohara Y., Akiyama K., Isono K. The physical map of the whole E. coli chromosome: Application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 1987, 50(3):495-508.
    • (1987) Cell , vol.50 , Issue.3 , pp. 495-508
    • Kohara, Y.1    Akiyama, K.2    Isono, K.3
  • 27
    • 0037077108 scopus 로고    scopus 로고
    • Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis
    • Read T.D., Salzberg S.L., Pop M., Shumway M., Umayam L., Jiang L., et al. Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis. Science 2002, 296(5575):2028-2033.
    • (2002) Science , vol.296 , Issue.5575 , pp. 2028-2033
    • Read, T.D.1    Salzberg, S.L.2    Pop, M.3    Shumway, M.4    Umayam, L.5    Jiang, L.6
  • 28
    • 0038752613 scopus 로고    scopus 로고
    • The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria
    • Read T.D., Peterson S.N., Tourasse N., Baillie L.W., Paulsen I.T., Nelson K.E., et al. The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature 2003, 423(6935):81-86.
    • (2003) Nature , vol.423 , Issue.6935 , pp. 81-86
    • Read, T.D.1    Peterson, S.N.2    Tourasse, N.3    Baillie, L.W.4    Paulsen, I.T.5    Nelson, K.E.6
  • 30
    • 0012340085 scopus 로고    scopus 로고
    • Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence
    • RESEARCH0079
    • Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A., Patel S., et al. Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence. Genome Biol. 2002, 3(12). RESEARCH0079.
    • (2002) Genome Biol. , vol.3 , Issue.12
    • Celniker, S.E.1    Wheeler, D.A.2    Kronmiller, B.3    Carlson, J.W.4    Halpern, A.5    Patel, S.6
  • 31
    • 0034020175 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis
    • Keim P., Price L.B., Klevytska A.M., Smith K.L., Schupp J.M., Okinaka R., et al. Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis. J. Bacteriol. 2000, 182(10):2928-2936.
    • (2000) J. Bacteriol. , vol.182 , Issue.10 , pp. 2928-2936
    • Keim, P.1    Price, L.B.2    Klevytska, A.M.3    Smith, K.L.4    Schupp, J.M.5    Okinaka, R.6
  • 32
    • 73949090104 scopus 로고    scopus 로고
    • Applications of ultra-high-throughput sequencing
    • Fox S., Filichkin S., Mockler T.C. Applications of ultra-high-throughput sequencing. Methods Mol. Biol. 2009, 553:79-108.
    • (2009) Methods Mol. Biol. , vol.553 , pp. 79-108
    • Fox, S.1    Filichkin, S.2    Mockler, T.C.3
  • 33
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M., Egholm M., Altman W.E., Attiya S., Bader J.S., Bemben L.A., et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437(7057):376-380.
    • (2005) Nature , vol.437 , Issue.7057 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3    Attiya, S.4    Bader, J.S.5    Bemben, L.A.6
  • 34
    • 50149095793 scopus 로고    scopus 로고
    • The Genome Sequencer FLX System-longer reads, more applications, straight forward bioinformatics and more complete data sets
    • Droege M., Hill B. The Genome Sequencer FLX System-longer reads, more applications, straight forward bioinformatics and more complete data sets. J. Biotechnol. 2008, 136(1-2):3-10.
    • (2008) J. Biotechnol. , vol.136 , Issue.1-2 , pp. 3-10
    • Droege, M.1    Hill, B.2
  • 35
    • 0031854986 scopus 로고    scopus 로고
    • Man-made cell-like compartments for molecular evolution
    • Tawfik D.S., Griffiths A.D. Man-made cell-like compartments for molecular evolution. Nat. Biotechnol. 1998, 16(7):652-656.
    • (1998) Nat. Biotechnol. , vol.16 , Issue.7 , pp. 652-656
    • Tawfik, D.S.1    Griffiths, A.D.2
  • 36
    • 57049122389 scopus 로고    scopus 로고
    • A large genome center's improvements to the Illumina sequencing system
    • Quail M.A., Kozarewa I., Smith F., Scally A., Stephens P.J., Durbin R., et al. A large genome center's improvements to the Illumina sequencing system. Nat. Methods 2008, 5(12):1005-1010.
    • (2008) Nat. Methods , vol.5 , Issue.12 , pp. 1005-1010
    • Quail, M.A.1    Kozarewa, I.2    Smith, F.3    Scally, A.4    Stephens, P.J.5    Durbin, R.6
  • 37
    • 64849115804 scopus 로고    scopus 로고
    • Digital PCR provides sensitive and absolute calibration for high throughput sequencing
    • White R.A., Blainey P.C., Fan H.C., Quake S.R. Digital PCR provides sensitive and absolute calibration for high throughput sequencing. BMC Genomics 2009, 10:116.
    • (2009) BMC Genomics , vol.10 , pp. 116
    • White, R.A.1    Blainey, P.C.2    Fan, H.C.3    Quake, S.R.4
  • 38
    • 38349172944 scopus 로고    scopus 로고
    • From micrograms to picograms: Quantitative PCR reduces the material demands of high-throughput sequencing
    • Meyer M., Briggs A.W., Maricic T., Hober B., Hoffner B., Krause J., et al. From micrograms to picograms: Quantitative PCR reduces the material demands of high-throughput sequencing. Nucleic Acids Res. 2008, 36(1):e5.
    • (2008) Nucleic Acids Res. , vol.36 , Issue.1
    • Meyer, M.1    Briggs, A.W.2    Maricic, T.3    Hober, B.4    Hoffner, B.5    Krause, J.6
  • 39
    • 41649106136 scopus 로고    scopus 로고
    • Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    • Morin R.D., O'Connor M.D., Griffith M., Kuchenbauer F., Delaney A., Prabhu A.L., et al. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res. 2008, 18(4):610-621.
    • (2008) Genome Res. , vol.18 , Issue.4 , pp. 610-621
    • Morin, R.D.1    O'Connor, M.D.2    Griffith, M.3    Kuchenbauer, F.4    Delaney, A.5    Prabhu, A.L.6
  • 40
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • Barski A., Cuddapah S., Cui K., Roh T.Y., Schones D.E., Wang Z., et al. High-resolution profiling of histone methylations in the human genome. Cell 2007, 129(4):823-837.
    • (2007) Cell , vol.129 , Issue.4 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.Y.4    Schones, D.E.5    Wang, Z.6
  • 41
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino D.R., Birney E. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 2008, 18(5):821-829.
    • (2008) Genome Res. , vol.18 , Issue.5 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 43
    • 76249102138 scopus 로고    scopus 로고
    • De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data
    • Diguistini S., Liao N.Y., Platt D., Robertson G., Seidel M., Chan S.K., et al. De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data. Genome Biol. 2009, 10(9):R94.
    • (2009) Genome Biol. , vol.10 , Issue.9
    • Diguistini, S.1    Liao, N.Y.2    Platt, D.3    Robertson, G.4    Seidel, M.5    Chan, S.K.6
  • 44
    • 48349124258 scopus 로고    scopus 로고
    • High-throughput sequencing provides insights into genome variation and evolution in Salmonella typhi
    • Holt K.E., Parkhill J., Mazzoni C.J., Roumagnac P., Weill F.X., Goodhead I., et al. High-throughput sequencing provides insights into genome variation and evolution in Salmonella typhi. Nat. Genet. 2008, 40(8):987-993.
    • (2008) Nat. Genet. , vol.40 , Issue.8 , pp. 987-993
    • Holt, K.E.1    Parkhill, J.2    Mazzoni, C.J.3    Roumagnac, P.4    Weill, F.X.5    Goodhead, I.6
  • 47
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • Gordon D., Abajian C., Green P. Consed: A graphical tool for sequence finishing. Genome Res. 1998, 8(3):195-202.
    • (1998) Genome Res. , vol.8 , Issue.3 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 48
  • 49
    • 84882879053 scopus 로고    scopus 로고
    • Documentation for PHARP Available from
    • P. Green, Documentation for PHARP, 1996. Available from:. http://bozeman.mbt.washington.edu.
    • (1996)
    • Green, P.1
  • 50
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using PHRED. I. Accuracy assessment
    • Ewing B., Hillier L., Wendl M.C., Green P. Base-calling of automated sequencer traces using PHRED. I. Accuracy assessment. Genome Res. 1998, 8(3):175-185.
    • (1998) Genome Res. , vol.8 , Issue.3 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 51
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using PHRED. II. Error probabilities
    • Ewing B., Green P. Base-calling of automated sequencer traces using PHRED. II. Error probabilities. Genome Res. 1998, 8(3):186-194.
    • (1998) Genome Res. , vol.8 , Issue.3 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 52
    • 0029197192 scopus 로고
    • Combinatorial algorithms for DNA sequence assembly
    • Kececioglu J.D., Myers E.W. Combinatorial algorithms for DNA sequence assembly. Algorithmica 1995, 13:7-51.
    • (1995) Algorithmica , vol.13 , pp. 7-51
    • Kececioglu, J.D.1    Myers, E.W.2
  • 53
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li H., Ruan J., Durbin R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 2008, 18(11):1851-1858.
    • (2008) Genome Res. , vol.18 , Issue.11 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 54
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H., Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25(14):1754-1760.
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 55
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B., Trapnell C., Pop M., Salzberg S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009, 10(3):R25.
    • (2009) Genome Biol. , vol.10 , Issue.3
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4


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