-
1
-
-
77955370663
-
Notch1 is required for maintenance of the reservoir of adult hippocampal stem cells
-
Ables J.L., Decarolis NA, Johnson MA, Rivera PD, Gao Z, Cooper DC, Radtke F, Hsieh J, Eisch AJ. 2010. Notch1 is required for maintenance of the reservoir of adult hippocampal stem cells. J Neurosci 30: 10484-10492.
-
(2010)
J Neurosci
, vol.30
, pp. 10484-10492
-
-
Ables, J.L.1
Decarolis, N.A.2
Johnson, M.A.3
Rivera, P.D.4
Gao, Z.5
Cooper, D.C.6
Radtke, F.7
Hsieh, J.8
Eisch, A.J.9
-
2
-
-
0344629659
-
Nuclear factor I/thyroid transcription factor 1 interactions modulate surfactant protein C transcription
-
Bachurski C.J., Yang GH, Currier TA, Gronostajski RM, Hong D. 2003. Nuclear factor I/thyroid transcription factor 1 interactions modulate surfactant protein C transcription. Mol Cell Biol 23: 9014-9024.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 9014-9024
-
-
Bachurski, C.J.1
Yang, G.H.2
Currier, T.A.3
Gronostajski, R.M.4
Hong, D.5
-
3
-
-
33746550363
-
Persistent and high levels of Hes1 expression regulate boundary formation in the developing central nervous system
-
Baek J.H., Hatakeyama J, Sakamoto S, Ohtsuka T, Kageyama R. 2006. Persistent and high levels of Hes1 expression regulate boundary formation in the developing central nervous system. Development 133: 2467-2476.
-
(2006)
Development
, vol.133
, pp. 2467-2476
-
-
Baek, J.H.1
Hatakeyama, J.2
Sakamoto, S.3
Ohtsuka, T.4
Kageyama, R.5
-
4
-
-
78649637954
-
In vivo fate mapping and expression analysis reveals molecular hallmarks of prospectively isolated adult neural stem cells
-
Beckervordersandforth R., Tripathi P, Ninkovic J, Bayam E, Lepier A., Stempfhuber B, Kirchhoff F, Hirrlinger J, Haslinger A, Lie DC, et al. 2010. In vivo fate mapping and expression analysis reveals molecular hallmarks of prospectively isolated adult neural stem cells. Cell Stem Cell 7: 744-758.
-
(2010)
Cell Stem Cell
, vol.7
, pp. 744-758
-
-
Beckervordersandforth, R.1
Tripathi, P.2
Ninkovic, J.3
Bayam, E.4
Lepier, A.5
Stempfhuber, B.6
Kirchhoff, F.7
Hirrlinger, J.8
Haslinger, A.9
Lie, D.C.10
-
5
-
-
84867158452
-
Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis
-
Bogdanovic O., Fernandez-Minan A, Tena JJ, de la Calle-Mustienes E, Hidalgo C, van Kruysbergen I, van Heeringen SJ, Veenstra GJ, Gomez-Skarmeta JL. 2012. Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis. Genome Res 22: 2043-2053.
-
(2012)
Genome Res
, vol.22
, pp. 2043-2053
-
-
Bogdanovic, O.1
Fernandez-Minan, A.2
Tena, J.J.3
de la Calle-Mustienes, E.4
Hidalgo, C.5
van Kruysbergen, I.6
van Heeringen, S.J.7
Veenstra, G.J.8
Gomez-Skarmeta, J.L.9
-
6
-
-
55249109615
-
Noggin expands neural stem cells in the adult hippocampus
-
Bonaguidi M.A., Peng CY, McGuire T, Falciglia G, Gobeske KT, Czeisler C., Kessler JA. 2008. Noggin expands neural stem cells in the adult hippocampus. J Neurosci 28: 9194-9204.
-
(2008)
J Neurosci
, vol.28
, pp. 9194-9204
-
-
Bonaguidi, M.A.1
Peng, C.Y.2
McGuire, T.3
Falciglia, G.4
Gobeske, K.T.5
Czeisler, C.6
Kessler, J.A.7
-
7
-
-
84856239091
-
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
-
Bonn S., Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, Wilczynski B, Riddell A, Furlong EE. 2012. Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. Nat Genet 44: 148-156.
-
(2012)
Nat Genet
, vol.44
, pp. 148-156
-
-
Bonn, S.1
Zinzen, R.P.2
Girardot, C.3
Gustafson, E.H.4
Perez-Gonzalez, A.5
Delhomme, N.6
Ghavi-Helm, Y.7
Wilczynski, B.8
Riddell, A.9
Furlong, E.E.10
-
8
-
-
84866026888
-
Colonization of the satellite cell niche by skeletal muscle progenitor cells depends on notch signals
-
Brohl D., Vasyutina E, Czajkowski MT, Griger J, Rassek C, Rahn HP, Purfurst B, Wende H, Birchmeier C. 2012. Colonization of the satellite cell niche by skeletal muscle progenitor cells depends on notch signals. Dev Cell 23: 469-481.
-
(2012)
Dev Cell
, vol.23
, pp. 469-481
-
-
Brohl, D.1
Vasyutina, E.2
Czajkowski, M.T.3
Griger, J.4
Rassek, C.5
Rahn, H.P.6
Purfurst, B.7
Wende, H.8
Birchmeier, C.9
-
9
-
-
0242353154
-
Vertebrate neurogenesis is counteracted by Sox1-3 activity
-
Bylund M., Andersson E, Novitch BG, Muhr J. 2003. Vertebrate neurogenesis is counteracted by Sox1-3 activity. Nat Neurosci 6: 1162-1168.
-
(2003)
Nat Neurosci
, vol.6
, pp. 1162-1168
-
-
Bylund, M.1
Andersson, E.2
Novitch, B.G.3
Muhr, J.4
-
10
-
-
44949088465
-
The transcription factor Nfix is essential for normal brain development
-
Campbell C.E., Piper M, Plachez C, Yeh YT, Baizer JS, Osinski JM, Litwack ED, Richards LJ, Gronostajski RM. 2008. The transcription factor Nfix is essential for normal brain development. BMC Dev Biol 8: 52.
-
(2008)
BMC Dev Biol
, vol.8
, pp. 52
-
-
Campbell, C.E.1
Piper, M.2
Plachez, C.3
Yeh, Y.T.4
Baizer, J.S.5
Osinski, J.M.6
Litwack, E.D.7
Richards, L.J.8
Gronostajski, R.M.9
-
11
-
-
79955676827
-
A novel function of the proneural factor Ascl1 in progenitor proliferation identified by genome-wide characterization of its targets
-
Castro D.S., Martynoga B, Parras C, Ramesh V, Pacary E, Johnston C, Drechsel D, Lebel-Potter M, Garcia LG, Hunt C, et al. 2011. A novel function of the proneural factor Ascl1 in progenitor proliferation identified by genome-wide characterization of its targets. Genes Dev 25: 930-945.
-
(2011)
Genes Dev
, vol.25
, pp. 930-945
-
-
Castro, D.S.1
Martynoga, B.2
Parras, C.3
Ramesh, V.4
Pacary, E.5
Johnston, C.6
Drechsel, D.7
Lebel-Potter, M.8
Garcia, L.G.9
Hunt, C.10
-
12
-
-
84871603152
-
Adhesion in the stem cell niche: Biological roles and regulation
-
Chen S., Lewallen M, Xie T. 2013. Adhesion in the stem cell niche: Biological roles and regulation. Development 140: 255-265.
-
(2013)
Development
, vol.140
, pp. 255-265
-
-
Chen, S.1
Lewallen, M.2
Xie, T.3
-
14
-
-
77249144782
-
Neural stem cell systems: Physiological players or in vitro entities?
-
Conti L., Cattaneo E. 2010. Neural stem cell systems: Physiological players or in vitro entities? Nat Rev Neurosci 11: 176-187.
-
(2010)
Nat Rev Neurosci
, vol.11
, pp. 176-187
-
-
Conti, L.1
Cattaneo, E.2
-
15
-
-
24944484633
-
Nicheindependent symmetrical self-renewal of a mammalian tissue stem cell
-
Conti L., Pollard SM, Gorba T, Reitano E, Toselli M, Biella G, Sun Y., Sanzone S, Ying QL, Cattaneo E, et al. 2005. Nicheindependent symmetrical self-renewal of a mammalian tissue stem cell. PLoS Biol 3: e283.
-
(2005)
PLoS Biol
, vol.3
-
-
Conti, L.1
Pollard, S.M.2
Gorba, T.3
Reitano, E.4
Toselli, M.5
Biella, G.6
Sun, Y.7
Sanzone, S.8
Ying, Q.L.9
Cattaneo, E.10
-
16
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton M.P., Cheng AW, Welstead GG, Kooistra T, Carey BW, Steine E.J., Hanna J, Lodato MA, Frampton GM, Sharp PA, et al. 2010. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc Natl Acad Sci 107: 21931-21936.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
-
17
-
-
33845461219
-
The transcription factor NFIA controls the onset of gliogenesis in the developing spinal cord
-
Deneen B., Ho R, Lukaszewicz A, Hochstim CJ, Gronostajski RM, Anderson DJ. 2006. The transcription factor NFIA controls the onset of gliogenesis in the developing spinal cord. Neuron 52: 953-968.
-
(2006)
Neuron
, vol.52
, pp. 953-968
-
-
Deneen, B.1
Ho, R.2
Lukaszewicz, A.3
Hochstim, C.J.4
Gronostajski, R.M.5
Anderson, D.J.6
-
18
-
-
34248168145
-
Nuclear factor I X deficiency causes brain malformation and severe skeletal defects
-
Driller K., Pagenstecher A, Uhl M, Omran H, Berlis A, Grunder A, Sippel AE. 2007. Nuclear factor I X deficiency causes brain malformation and severe skeletal defects. Mol Cell Biol 27: 3855-3867.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 3855-3867
-
-
Driller, K.1
Pagenstecher, A.2
Uhl, M.3
Omran, H.4
Berlis, A.5
Grunder, A.6
Sippel, A.E.7
-
19
-
-
77958045673
-
RBPJk-dependent signaling is essential for long-term maintenance of neural stem cells in the adult hippocampus
-
Ehm O., Goritz C, Covic M, Schaffner I, Schwarz TJ, Karaca E, Kempkes B., Kremmer E, Pfrieger FW, Espinosa L, et al. 2010. RBPJk-dependent signaling is essential for long-term maintenance of neural stem cells in the adult hippocampus. J Neurosci 30: 13794-13807.
-
(2010)
J Neurosci
, vol.30
, pp. 13794-13807
-
-
Ehm, O.1
Goritz, C.2
Covic, M.3
Schaffner, I.4
Schwarz, T.J.5
Karaca, E.6
Kempkes, B.7
Kremmer, E.8
Pfrieger, F.W.9
Espinosa, L.10
-
20
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
Ernst J., Kheradpour P, Mikkelsen TS, Shoresh N, Ward LD, Epstein C.B., Zhang X, Wang L, Issner R, Coyne M, et al. 2011. Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 473: 43-49.
-
(2011)
Nature
, vol.473
, pp. 43-49
-
-
Ernst, J.1
Kheradpour, P.2
Mikkelsen, T.S.3
Shoresh, N.4
Ward, L.D.5
Epstein, C.B.6
Zhang, X.7
Wang, L.8
Issner, R.9
Coyne, M.10
-
21
-
-
48849109215
-
Physical activity and the regulation of neurogenesis in the adult and aging brain
-
Fabel K., Kempermann G. 2008. Physical activity and the regulation of neurogenesis in the adult and aging brain. Neuromolecular Med 10: 59-66.
-
(2008)
Neuromolecular Med
, vol.10
, pp. 59-66
-
-
Fabel, K.1
Kempermann, G.2
-
22
-
-
84872498439
-
Signaling mechanisms regulating adult neural stem cells and neurogenesis
-
Faigle R., Song H. 2013. Signaling mechanisms regulating adult neural stem cells and neurogenesis. Biochim Biophys Acta 1830: 2435-2448.
-
(2013)
Biochim Biophys Acta
, vol.1830
, pp. 2435-2448
-
-
Faigle, R.1
Song, H.2
-
23
-
-
1642603951
-
Socializing with the neighbors: Stem cells and their niche
-
Fuchs E., Tumbar T, Guasch G. 2004. Socializing with the neighbors: Stem cells and their niche. Cell 116: 769-778.
-
(2004)
Cell
, vol.116
, pp. 769-778
-
-
Fuchs, E.1
Tumbar, T.2
Guasch, G.3
-
25
-
-
35348875982
-
Molecular signature of quiescent satellite cells in adult skeletal muscle
-
Fukada S., Uezumi A, Ikemoto M, Masuda S, Segawa M, Tanimura N., Yamamoto H, Miyagoe-Suzuki Y, Takeda S. 2007. Molecular signature of quiescent satellite cells in adult skeletal muscle. Stem Cells 25: 2448-2459.
-
(2007)
Stem Cells
, vol.25
, pp. 2448-2459
-
-
Fukada, S.1
Uezumi, A.2
Ikemoto, M.3
Masuda, S.4
Segawa, M.5
Tanimura, N.6
Yamamoto, H.7
Miyagoe-Suzuki, Y.8
Takeda, S.9
-
26
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
Heintzman N.D., Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD, Barrera LO, Van Calcar S, Qu C, Ching KA, et al. 2007. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet 39: 311-318.
-
(2007)
Nat Genet
, vol.39
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
van Calcar, S.8
Qu, C.9
Ching, K.A.10
-
27
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
Heintzman N.D., Hon GC, Hawkins RD, Kheradpour P, Stark A, Harp L.F., Ye Z, Lee LK, Stuart RK, Ching CW, et al. 2009. Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 459: 108-112.
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
Harp, L.F.6
Ye, Z.7
Lee, L.K.8
Stuart, R.K.9
Ching, C.W.10
-
29
-
-
84885176164
-
NFIX regulates neural progenitor cell differentiation during hippocampal morphogenesis
-
doi: 10.1093/cercor/ bhs307
-
Heng Y.H., McLeay RC, Harvey TJ, Smith AG, Barry G, Cato K, Plachez C., Little E, Mason S, Dixon C, et al. 2012b. NFIX regulates neural progenitor cell differentiation during hippocampal morphogenesis. Cereb Cortex doi: 10.1093/cercor/ bhs307.
-
(2012)
Cereb Cortex
-
-
Heng, Y.H.1
McLeay, R.C.2
Harvey, T.J.3
Smith, A.G.4
Barry, G.5
Cato, K.6
Plachez, C.7
Little, E.8
Mason, S.9
Dixon, C.10
-
30
-
-
84861138973
-
Orchestrating transcriptional control of adult neurogenesis
-
Hsieh J. 2012. Orchestrating transcriptional control of adult neurogenesis. Genes Dev 26: 1010-1021.
-
(2012)
Genes Dev
, vol.26
, pp. 1010-1021
-
-
Hsieh, J.1
-
31
-
-
0029087659
-
Direct adhesion to bone marrow stroma via fibronectin receptors inhibits hematopoietic progenitor proliferation
-
Hurley R.W., McCarthy JB, Verfaillie CM. 1995. Direct adhesion to bone marrow stroma via fibronectin receptors inhibits hematopoietic progenitor proliferation. J Clin Invest 96: 511-519.
-
(1995)
J Clin Invest
, vol.96
, pp. 511-519
-
-
Hurley, R.W.1
McCarthy, J.B.2
Verfaillie, C.M.3
-
32
-
-
70849099495
-
The extracellular matrix: Not just pretty fibrils
-
Hynes RO. 2009. The extracellular matrix: Not just pretty fibrils. Science 326: 1216-1219.
-
(2009)
Science
, vol.326
, pp. 1216-1219
-
-
Hynes, R.O.1
-
33
-
-
77749336752
-
Essential roles of Notch signaling in maintenance of neural stem cells in developing and adult brains
-
Imayoshi I., Sakamoto M, Yamaguchi M, Mori K, Kageyama R. 2010. Essential roles of Notch signaling in maintenance of neural stem cells in developing and adult brains. J Neurosci 30: 3489-3498.
-
(2010)
J Neurosci
, vol.30
, pp. 3489-3498
-
-
Imayoshi, I.1
Sakamoto, M.2
Yamaguchi, M.3
Mori, K.4
Kageyama, R.5
-
34
-
-
77954857356
-
Quiescence and activation of stem and precursor cell populations in the subependymal zone of the mammalian brain are associated with distinct cellular and extracellular matrix signals
-
Kazanis I., Lathia JD, Vadakkan TJ, Raborn E, Wan R, Mughal MR, Eckley DM, Sasaki T, Patton B, Mattson MP, et al. 2010. Quiescence and activation of stem and precursor cell populations in the subependymal zone of the mammalian brain are associated with distinct cellular and extracellular matrix signals. J Neurosci 30: 9771-9781.
-
(2010)
J Neurosci
, vol.30
, pp. 9771-9781
-
-
Kazanis, I.1
Lathia, J.D.2
Vadakkan, T.J.3
Raborn, E.4
Wan, R.5
Mughal, M.R.6
Eckley, D.M.7
Sasaki, T.8
Patton, B.9
Mattson, M.P.10
-
35
-
-
34748926972
-
Novel extracellular matrix structures in the neural stem cell niche capture the neurogenic factor fibroblast growth factor 2 from the extracellular milieu
-
Kerever A., Schnack J, Vellinga D, Ichikawa N, Moon C, Arikawa-Hirasawa E., Efird JT, Mercier F. 2007. Novel extracellular matrix structures in the neural stem cell niche capture the neurogenic factor fibroblast growth factor 2 from the extracellular milieu. Stem Cells 25: 2146-2157.
-
(2007)
Stem Cells
, vol.25
, pp. 2146-2157
-
-
Kerever, A.1
Schnack, J.2
Vellinga, D.3
Ichikawa, N.4
Moon, C.5
Arikawa-Hirasawa, E.6
Efird, J.T.7
Mercier, F.8
-
36
-
-
34547145922
-
Loss of a quiescent niche but not follicle stem cells in the absence of bone morphogenetic protein signaling
-
Kobielak K., Stokes N, de la Cruz J, Polak L, Fuchs E. 2007. Loss of a quiescent niche but not follicle stem cells in the absence of bone morphogenetic protein signaling. Proc Natl Acad Sci 104: 10063-10068.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 10063-10068
-
-
Kobielak, K.1
Stokes, N.2
de la Cruz, J.3
Polak, L.4
Fuchs, E.5
-
37
-
-
77956241246
-
Adult SVZ lineage cells home to and leave the vascular niche via differential responses to SDF1/CXCR4 signaling
-
Kokovay E., Goderie S, Wang Y, Lotz S, Lin G, Sun Y, Roysam B, Shen Q., Temple S. 2010. Adult SVZ lineage cells home to and leave the vascular niche via differential responses to SDF1/CXCR4 signaling. Cell Stem Cell 7: 163-173.
-
(2010)
Cell Stem Cell
, vol.7
, pp. 163-173
-
-
Kokovay, E.1
Goderie, S.2
Wang, Y.3
Lotz, S.4
Lin, G.5
Sun, Y.6
Roysam, B.7
Shen, Q.8
Temple, S.9
-
38
-
-
84864603513
-
VCAM1 is essential to maintain the structure of the SVZ niche and acts as an environmental sensor to regulate SVZ lineage progression
-
Kokovay E, Wang Y, Kusek G, Wurster R, Lederman P, Lowry N, Shen Q., Temple S. 2012. VCAM1 is essential to maintain the structure of the SVZ niche and acts as an environmental sensor to regulate SVZ lineage progression. Cell Stem Cell 11: 220-230.
-
(2012)
Cell Stem Cell
, vol.11
, pp. 220-230
-
-
Kokovay, E.1
Wang, Y.2
Kusek, G.3
Wurster, R.4
Lederman, P.5
Lowry, N.6
Shen, Q.7
Temple, S.8
-
39
-
-
79953177468
-
Aligning short sequencing reads with Bowtie
-
Langmead B. 2010. Aligning short sequencing reads with Bowtie. Curr Protoc Bioinformatics 32: 11.7.1-11.7.14.
-
(2010)
Curr Protoc Bioinformatics
, vol.32
, pp. 1171-11714
-
-
Langmead, B.1
-
41
-
-
59649113226
-
GADEM: A genetic algorithm guided formation of spaced dyads coupled with an EM algorithm for motif discovery
-
Li L. 2009. GADEM: A genetic algorithm guided formation of spaced dyads coupled with an EM algorithm for motif discovery. J Comput Biol 16: 317-329.
-
(2009)
J Comput Biol
, vol.16
, pp. 317-329
-
-
Li, L.1
-
42
-
-
75749146169
-
Coexistence of quiescent and active adult stem cells in mammals
-
Li L., Clevers H. 2010. Coexistence of quiescent and active adult stem cells in mammals. Science 327: 542-545.
-
(2010)
Science
, vol.327
, pp. 542-545
-
-
Li, L.1
Clevers, H.2
-
43
-
-
80052298366
-
Genome-wide maps of histone modifications unwind in vivo chromatin states of the hair follicle lineage
-
Lien W.H., Guo X, Polak L, Lawton LN, Young RA, Zheng D, Fuchs E. 2011. Genome-wide maps of histone modifications unwind in vivo chromatin states of the hair follicle lineage. Cell Stem Cell 9: 219-232.
-
(2011)
Cell Stem Cell
, vol.9
, pp. 219-232
-
-
Lien, W.H.1
Guo, X.2
Polak, L.3
Lawton, L.N.4
Young, R.A.5
Zheng, D.6
Fuchs, E.7
-
44
-
-
33846815345
-
Olig2-regulated lineage-restricted pathway controls replication competence in neural stem cells and malignant glioma
-
Ligon K.L., Huillard E, Mehta S, Kesari S, Liu H, Alberta JA, Bachoo R.M., Kane M, Louis DN, Depinho RA, et al. 2007. Olig2-regulated lineage-restricted pathway controls replication competence in neural stem cells and malignant glioma. Neuron 53: 503-517.
-
(2007)
Neuron
, vol.53
, pp. 503-517
-
-
Ligon, K.L.1
Huillard, E.2
Mehta, S.3
Kesari, S.4
Liu, H.5
Alberta, J.A.6
Bachoo, R.M.7
Kane, M.8
Louis, D.N.9
Depinho, R.A.10
-
45
-
-
71549167579
-
Regulation of adult neurogenesis by stress, sleep disruption, exercise and inflammation: Implications for depression and antidepressant action
-
Lucassen P.J., Meerlo P, Naylor AS, van Dam AM, Dayer AG, Fuchs E., Oomen CA, Czeh B. 2010. Regulation of adult neurogenesis by stress, sleep disruption, exercise and inflammation: Implications for depression and antidepressant action. Eur Neuropsychopharmacol 20: 1-17.
-
(2010)
Eur Neuropsychopharmacol
, vol.20
, pp. 1-17
-
-
Lucassen, P.J.1
Meerlo, P.2
Naylor, A.S.3
van Dam, A.M.4
Dayer, A.G.5
Fuchs, E.6
Oomen, C.A.7
Czeh, B.8
-
46
-
-
77955368742
-
Quiescent and active hippocampal neural stem cells with distinct morphologies respond selectively to physiological and pathological stimuli and aging
-
Lugert S., Basak O, Knuckles P, Haussler U, Fabel K, Gotz M, Haas C.A., Kempermann G, Taylor V, Giachino C. 2010. Quiescent and active hippocampal neural stem cells with distinct morphologies respond selectively to physiological and pathological stimuli and aging. Cell Stem Cell 6: 445-456.
-
(2010)
Cell Stem Cell
, vol.6
, pp. 445-456
-
-
Lugert, S.1
Basak, O.2
Knuckles, P.3
Haussler, U.4
Fabel, K.5
Gotz, M.6
Haas, C.A.7
Kempermann, G.8
Taylor, V.9
Giachino, C.10
-
47
-
-
68649094716
-
Activity-dependent extrinsic regulation of adult olfactory bulb and hippocampal neurogenesis
-
Ma D.K., Kim WR, Ming GL, Song H. 2009. Activity-dependent extrinsic regulation of adult olfactory bulb and hippocampal neurogenesis. Ann NY Acad Sci 1170: 664-673.
-
(2009)
Ann NY Acad Sci
, vol.1170
, pp. 664-673
-
-
Ma, D.K.1
Kim, W.R.2
Ming, G.L.3
Song, H.4
-
48
-
-
79958117256
-
MEME-ChIP: Motif analysis of large DNA datasets
-
Machanick P., Bailey TL. 2011. MEME-ChIP: Motif analysis of large DNA datasets. Bioinformatics 27: 1696-1697.
-
(2011)
Bioinformatics
, vol.27
, pp. 1696-1697
-
-
McHanick, P.1
Bailey, T.L.2
-
50
-
-
0033980393
-
Helix-loop-helix proteins: Regulators of transcription in eucaryotic organisms
-
Massari M.E., Murre C. 2000. Helix-loop-helix proteins: Regulators of transcription in eucaryotic organisms. Mol Cell Biol 20: 429-440.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 429-440
-
-
Massari, M.E.1
Murre, C.2
-
51
-
-
77952214662
-
GREAT improves functional interpretation of cis-regulatory regions
-
McLean CY, Bristor D, Hiller M, Clarke SL, Schaar BT, Lowe CB, Wenger AM, Bejerano G. 2010. GREAT improves functional interpretation of cis-regulatory regions. Nat Biotechnol 28: 495-501.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 495-501
-
-
McLean, C.Y.1
Bristor, D.2
Hiller, M.3
Clarke, S.L.4
Schaar, B.T.5
Lowe, C.B.6
Wenger, A.M.7
Bejerano, G.8
-
52
-
-
49649125042
-
Genome-scale DNA methylation maps of pluripotent and differentiated cells
-
Meissner A., Mikkelsen TS, Gu H, WernigM, Hanna J, Sivachenko A, Zhang X, Bernstein BE, Nusbaum C, Jaffe DB, et al. 2008. Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature 454: 766-770.
-
(2008)
Nature
, vol.454
, pp. 766-770
-
-
Meissner, A.1
Mikkelsen, T.S.2
Gu, H.3
Wernig, M.4
Hanna, J.5
Sivachenko, A.6
Zhang, X.7
Bernstein, B.E.8
Nusbaum, C.9
Jaffe, D.B.10
-
53
-
-
77049114286
-
Nfix regulates fetal-specific transcription in developing skeletal muscle
-
Messina G., Biressi S, Monteverde S, Magli A, Cassano M, Perani L, Roncaglia E, Tagliafico E, Starnes L, Campbell CE, et al. 2010. Nfix regulates fetal-specific transcription in developing skeletal muscle. Cell 140: 554-566.
-
(2010)
Cell
, vol.140
, pp. 554-566
-
-
Messina, G.1
Biressi, S.2
Monteverde, S.3
Magli, A.4
Cassano, M.5
Perani, L.6
Roncaglia, E.7
Tagliafico, E.8
Starnes, L.9
Campbell, C.E.10
-
54
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen T.S., Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, et al. 2007. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448: 553-560.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.K.9
Koche, R.P.10
-
55
-
-
77957654497
-
Signaling through BMPR-IA regulates quiescence and long-term activity of neural stem cells in the adult hippocampus
-
Mira H., Andreu Z, Suh H, Lie DC, Jessberger S, Consiglio A, San Emeterio J., Hortiguela R, Marques-Torrejon MA, Nakashima K, et al. 2010. Signaling through BMPR-IA regulates quiescence and long-term activity of neural stem cells in the adult hippocampus. Cell Stem Cell 7: 78-89.
-
(2010)
Cell Stem Cell
, vol.7
, pp. 78-89
-
-
Mira, H.1
Andreu, Z.2
Suh, H.3
Lie, D.C.4
Jessberger, S.5
Consiglio, A.6
San Emeterio, J.7
Hortiguela, R.8
Marques-Torrejon, M.A.9
Nakashima, K.10
-
56
-
-
14344284361
-
BMP2-mediated alteration in the developmental pathway of fetal mouse brain cells from neurogenesis to astrocytogenesis
-
Nakashima K., Takizawa T, Ochiai W, Yanagisawa M, Hisatsune T, Nakafuku M, Miyazono K, Kishimoto T, Kageyama R, Taga T. 2001. BMP2-mediated alteration in the developmental pathway of fetal mouse brain cells from neurogenesis to astrocytogenesis. Proc Natl Acad Sci 98: 5868-5873.
-
(2001)
Proc Natl Acad Sci
, vol.98
, pp. 5868-5873
-
-
Nakashima, K.1
Takizawa, T.2
Ochiai, W.3
Yanagisawa, M.4
Hisatsune, T.5
Nakafuku, M.6
Miyazono, K.7
Kishimoto, T.8
Kageyama, R.9
Taga, T.10
-
57
-
-
80053277715
-
Activation of postnatal neural stem cells requires nuclear receptor TLX
-
Niu W., Zou Y, Shen C, Zhang CL. 2011. Activation of postnatal neural stem cells requires nuclear receptor TLX. J Neurosci 31: 13816-13828.
-
(2011)
J Neurosci
, vol.31
, pp. 13816-13828
-
-
Niu, W.1
Zou, Y.2
Shen, C.3
Zhang, C.L.4
-
58
-
-
38349132624
-
Deconstructing stem cell selfrenewal: Genetic insights into cell-cycle regulation
-
Orford K.W., Scadden DT. 2008. Deconstructing stem cell selfrenewal: Genetic insights into cell-cycle regulation. Nat Rev Genet 9: 115-128.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 115-128
-
-
Orford, K.W.1
Scadden, D.T.2
-
59
-
-
84872522528
-
Latent enhancers activated by stimulation in differentiated cells
-
Ostuni R., Piccolo V, Barozzi I, Polletti S, Termanini A, Bonifacio S, Curina A, Prosperini E, Ghisletti S, Natoli G. 2013. Latent enhancers activated by stimulation in differentiated cells. Cell 152: 157-171.
-
(2013)
Cell
, vol.152
, pp. 157-171
-
-
Ostuni, R.1
Piccolo, V.2
Barozzi, I.3
Polletti, S.4
Termanini, A.5
Bonifacio, S.6
Curina, A.7
Prosperini, E.8
Ghisletti, S.9
Natoli, G.10
-
60
-
-
70350497348
-
FoxOs cooperatively regulate diverse pathways governing neural stem cell homeostasis
-
Paik J.H., Ding Z, Narurkar R, Ramkissoon S, Muller F, Kamoun WS, Chae SS, Zheng H, Ying H, Mahoney J, et al. 2009. FoxOs cooperatively regulate diverse pathways governing neural stem cell homeostasis. Cell Stem Cell 5: 540-553.
-
(2009)
Cell Stem Cell
, vol.5
, pp. 540-553
-
-
Paik, J.H.1
Ding, Z.2
Narurkar, R.3
Ramkissoon, S.4
Muller, F.5
Kamoun, W.S.6
Chae, S.S.7
Zheng, H.8
Ying, H.9
Mahoney, J.10
-
61
-
-
76749142470
-
An adult tissue-specific stem cell in its niche: A gene profiling analysis of in vivo quiescent and activated muscle satellite cells
-
Pallafacchina G., Francois S, Regnault B, Czarny B, Dive V, Cumano A., Montarras D, Buckingham M. 2010. An adult tissue-specific stem cell in its niche: A gene profiling analysis of in vivo quiescent and activated muscle satellite cells. Stem Cell Res (Amst) 4: 77-91.
-
(2010)
Stem Cell Res (Amst)
, vol.4
, pp. 77-91
-
-
Pallafacchina, G.1
Francois, S.2
Regnault, B.3
Czarny, B.4
Dive, V.5
Cumano, A.6
Montarras, D.7
Buckingham, M.8
-
62
-
-
65549112127
-
Simultaneous prospective purification of adult subventricular zone neural stem cells and their progeny
-
Pastrana E., Cheng LC, Doetsch F. 2009. Simultaneous prospective purification of adult subventricular zone neural stem cells and their progeny. Proc Natl Acad Sci 106: 6387-6392.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 6387-6392
-
-
Pastrana, E.1
Cheng, L.C.2
Doetsch, F.3
-
63
-
-
79953680185
-
Nuclear factor I revealed as family of promoter binding transcription activators
-
Pjanic M., Pjanic P, Schmid C, Ambrosini G, Gaussin A, Plasari G, Mazza C, Bucher P, Mermod N. 2011. Nuclear factor I revealed as family of promoter binding transcription activators. BMC Genomics 12: 181.
-
(2011)
BMC Genomics
, vol.12
, pp. 181
-
-
Pjanic, M.1
Pjanic, P.2
Schmid, C.3
Ambrosini, G.4
Gaussin, A.5
Plasari, G.6
Mazza, C.7
Bucher, P.8
Mermod, N.9
-
64
-
-
79958175738
-
Epigenomics of human embryonic stem cells and induced pluripotent stem cells: Insights into pluripotency and implications for disease
-
Rada-Iglesias A, Wysocka J. 2011. Epigenomics of human embryonic stem cells and induced pluripotent stem cells: Insights into pluripotency and implications for disease. Genome Med 3: 36.
-
(2011)
Genome Med
, vol.3
, pp. 36
-
-
Rada-Iglesias, A.1
Wysocka, J.2
-
65
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
Rada-Iglesias A, Bajpai R, Swigut T, Brugmann SA, Flynn RA, Wysocka J. 2011. A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470: 279-283.
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
66
-
-
84868484735
-
Epigenomic annotation of enhancers predicts transcriptional regulators of human neural crest
-
Rada-Iglesias A, Bajpai R, Prescott S, Brugmann SA, Swigut T, Wysocka J. 2012. Epigenomic annotation of enhancers predicts transcriptional regulators of human neural crest. Cell Stem Cell 11: 633-648.
-
(2012)
Cell Stem Cell
, vol.11
, pp. 633-648
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Prescott, S.3
Brugmann, S.A.4
Swigut, T.5
Wysocka, J.6
-
67
-
-
70350506802
-
FoxO3 regulates neural stem cell homeostasis
-
Renault V.M., Rafalski VA, Morgan AA, Salih DA, Brett JO, Webb AE, Villeda SA, Thekkat PU, Guillerey C, Denko NC, et al. 2009. FoxO3 regulates neural stem cell homeostasis. Cell Stem Cell 5: 527-539.
-
(2009)
Cell Stem Cell
, vol.5
, pp. 527-539
-
-
Renault, V.M.1
Rafalski, V.A.2
Morgan, A.A.3
Salih, D.A.4
Brett, J.O.5
Webb, A.E.6
Villeda, S.A.7
Thekkat, P.U.8
Guillerey, C.9
Denko, N.C.10
-
69
-
-
4644223417
-
Interactions between ID and OLIG proteins mediate the inhibitory effects of BMP4 on oligodendroglial differentiation
-
Samanta J., Kessler JA. 2004. Interactions between ID and OLIG proteins mediate the inhibitory effects of BMP4 on oligodendroglial differentiation. Development 131: 4131-4142.
-
(2004)
Development
, vol.131
, pp. 4131-4142
-
-
Samanta, J.1
Kessler, J.A.2
-
70
-
-
50149117285
-
Control of the reversibility of cellular quiescence by the transcriptional repressor HES1
-
Sang L., Coller HA, Roberts JM. 2008. Control of the reversibility of cellular quiescence by the transcriptional repressor HES1. Science 321: 1095-1100.
-
(2008)
Science
, vol.321
, pp. 1095-1100
-
-
Sang, L.1
Coller, H.A.2
Roberts, J.M.3
-
71
-
-
0345491600
-
Deletion of a4 integrins from adult hematopoietic cells reveals roles in homeostasis, regeneration, and homing
-
Scott L.M., Priestley GV, Papayannopoulou T. 2003. Deletion of a4 integrins from adult hematopoietic cells reveals roles in homeostasis, regeneration, and homing. Mol Cell Biol 23: 9349-9360.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 9349-9360
-
-
Scott, L.M.1
Priestley, G.V.2
Papayannopoulou, T.3
-
72
-
-
77957285454
-
SOX9 induces and maintains neural stem cells
-
Scott C.E., Wynn SL, Sesay A, Cruz C, Cheung M, Gomez Gaviro MV, Booth S, Gao B, Cheah KS, Lovell-Badge R, et al. 2010. SOX9 induces and maintains neural stem cells. Nat Neurosci 13: 1181-1189.
-
(2010)
Nat Neurosci
, vol.13
, pp. 1181-1189
-
-
Scott, C.E.1
Wynn, S.L.2
Sesay, A.3
Cruz, C.4
Cheung, M.5
Gomez Gaviro, M.V.6
Booth, S.7
Gao, B.8
Cheah, K.S.9
Lovell-Badge, R.10
-
73
-
-
50849142558
-
Adult SVZ stem cells lie in a vascular niche: A quantitative analysis of niche cell-cell interactions
-
Shen Q., Wang Y, Kokovay E, Lin G, Chuang SM, Goderie SK, Roysam B., Temple S. 2008. Adult SVZ stem cells lie in a vascular niche: A quantitative analysis of niche cell-cell interactions. Cell Stem Cell 3: 289-300.
-
(2008)
Cell Stem Cell
, vol.3
, pp. 289-300
-
-
Shen, Q.1
Wang, Y.2
Kokovay, E.3
Lin, G.4
Chuang, S.M.5
Goderie, S.K.6
Roysam, B.7
Temple, S.8
-
74
-
-
0037220615
-
Abnormal development of forebrain midline glia and commissural projections in Nfia knock-out mice
-
Shu T., Butz KG, Plachez C, Gronostajski RM, Richards LJ. 2003. Abnormal development of forebrain midline glia and commissural projections in Nfia knock-out mice. J Neurosci 23: 203-212.
-
(2003)
J Neurosci
, vol.23
, pp. 203-212
-
-
Shu, T.1
Butz, K.G.2
Plachez, C.3
Gronostajski, R.M.4
Richards, L.J.5
-
75
-
-
27344435774
-
Gene set enrichment analysis: A knowledgebased approach for interpreting genome-wide expression profiles
-
Subramanian A., Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette M.A., Paulovich A, Pomeroy SL, Golub TR, Lander ES, et al. 2005. Gene set enrichment analysis: A knowledgebased approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci 102: 15545-15550.
-
(2005)
Proc Natl Acad Sci
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
-
76
-
-
79958195179
-
Interplay between FGF2 and BMP controls the self-renewal, dormancy and differentiation of rat neural stem cells
-
Sun Y., Hu J, Zhou L, Pollard SM, Smith A. 2011. Interplay between FGF2 and BMP controls the self-renewal, dormancy and differentiation of rat neural stem cells. J Cell Sci 124: 1867-1877.
-
(2011)
J Cell Sci
, vol.124
, pp. 1867-1877
-
-
Sun, Y.1
Hu, J.2
Zhou, L.3
Pollard, S.M.4
Smith, A.5
-
77
-
-
0035499887
-
The development of neural stem cells
-
Temple S. 2001. The development of neural stem cells. Nature 414: 112-117.
-
(2001)
Nature
, vol.414
, pp. 112-117
-
-
Temple, S.1
-
78
-
-
84857859359
-
RSAT peak-motifs: Motif analysis in full-size ChIP-seq datasets
-
Thomas-Chollier M, Herrmann C, Defrance M, Sand O, Thieffry D, van Helden J. 2012. RSAT peak-motifs: Motif analysis in full-size ChIP-seq datasets. Nucleic Acids Res 40: e31.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Thomas-Chollier, M.1
Herrmann, C.2
Defrance, M.3
Sand, O.4
Thieffry, D.5
van Helden, J.6
-
79
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell C., Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H., Salzberg SL, Rinn JL, Pachter L. 2012. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 7: 562-578.
-
(2012)
Nat Protoc
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
80
-
-
84860778451
-
Staying alive: Metabolic adaptations to quiescence
-
Valcourt J.R., Lemons JM, Haley EM, Kojima M, Demuren OO, Coller HA. 2012. Staying alive: Metabolic adaptations to quiescence. Cell Cycle 11: 1680-1696.
-
(2012)
Cell Cycle
, vol.11
, pp. 1680-1696
-
-
Valcourt, J.R.1
Lemons, J.M.2
Haley, E.M.3
Kojima, M.4
Demuren, O.O.5
Coller, H.A.6
-
81
-
-
8844250116
-
Molecular signatures of proliferation and quiescence in hematopoietic stem cells
-
Venezia T.A., Merchant AA, Ramos CA, Whitehouse NL, Young AS, Shaw CA, Goodell MA. 2004. Molecular signatures of proliferation and quiescence in hematopoietic stem cells. PLoS Biol 2: e301.
-
(2004)
PLoS Biol
, vol.2
-
-
Venezia, T.A.1
Merchant, A.A.2
Ramos, C.A.3
Whitehouse, N.L.4
Young, A.S.5
Shaw, C.A.6
Goodell, M.A.7
-
82
-
-
4644294109
-
BMP-2 decreases Mash1 stability by increasing Id1 expression
-
Vinals F., Reiriz J, Ambrosio S, Bartrons R, Rosa JL, Ventura F. 2004. BMP-2 decreases Mash1 stability by increasing Id1 expression. EMBO J 23: 3527-3537.
-
(2004)
EMBO J
, vol.23
, pp. 3527-3537
-
-
Vinals, F.1
Reiriz, J.2
Ambrosio, S.3
Bartrons, R.4
Rosa, J.L.5
Ventura, F.6
-
83
-
-
33745487597
-
HES1 inhibits cycling of hematopoietic progenitor cells via DNA binding
-
Yu X., Alder JK, Chun JH, Friedman AD, Heimfeld S, Cheng L, Civin CI. 2006. HES1 inhibits cycling of hematopoietic progenitor cells via DNA binding. Stem Cells 24: 876-888.
-
(2006)
Stem Cells
, vol.24
, pp. 876-888
-
-
Yu, X.1
Alder, J.K.2
Chun, J.H.3
Friedman, A.D.4
Heimfeld, S.5
Cheng, L.6
Civin, C.I.7
-
84
-
-
67650711619
-
A clustering approach for identification of enriched domains from histone modification ChIP-seq data
-
Zang C., Schones DE, Zeng C, Cui K, Zhao K, Peng W. 2009. A clustering approach for identification of enriched domains from histone modification ChIP-seq data. Bioinformatics 25: 1952-1958.
-
(2009)
Bioinformatics
, vol.25
, pp. 1952-1958
-
-
Zang, C.1
Schones, D.E.2
Zeng, C.3
Cui, K.4
Zhao, K.5
Peng, W.6
-
85
-
-
80051564877
-
Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions
-
Zentner G.E., Tesar PJ, Scacheri PC. 2011. Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions. Genome Res 21: 1273-1283.
-
(2011)
Genome Res
, vol.21
, pp. 1273-1283
-
-
Zentner, G.E.1
Tesar, P.J.2
Scacheri, P.C.3
-
86
-
-
53849146020
-
Model-based analysis of ChIP-seq (MACS)
-
Zhang Y., Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, et al. 2008. Model-based analysis of ChIP-seq (MACS). Genome Biol 9: R137.
-
(2008)
Genome Biol
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
|