Identifying the relevant spatial and temporal scales in plant species occurrence models: The case of arable weeds in landscape mosaic of crops

Ecological Complexity

Volumn 15, Issue , 2013, Pages 17-25

  Alignier, Audrey ^a   Ricci, Benoît ^a   Biju Duval, Luc ^a   Petit, Sandrine ^a  

^a UNIV BOURGOGNE FRANCHE COMTÉ   (France)

Author keywords

Field border; Field history; Management practices; Model selection; Neighboring field; Species distribution model

Indexed keywords

EID: 84882669215     PISSN: 1476945X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecocom.2013.01.007     Document Type: Article

References (67)

1. Alexander H.M., Foster B.L., Ballantine F., Collins C.D., Antonovics J., Holt R.D. Metapopulations and metacommunities: combining spatial and temporal perspectives in plant ecology. Journal of Ecology 2012, 100:88-103.
2. Alignier A., Bretagnolle V., Petit S. Spatial patterns of weeds along a gradient of landscape complexity. Basic and Applied Ecology 2012, 13:328-337.
3. Bàrberi P., Cascio B.L. Long-term tillage and crop rotation effects on weed seedbank size and composition. Weed Research 2001, 41:325-340.
4. Bergez J.E., Colbach N., Crespo O., Garcia F., Jeuffroy M.H., Justes E., Loyce C., Munier-Jolain N., Sadok W. Designing crop management systems by simulation. European Journal of Agronomy 2010, 32:3-9.
5. Bohan D.A., Powers S.J., Champion G., Haughton A.J., Hawes C., Squire G., Cussans J., Mertens S.K. Modelling rotations: can crop sequences explain arable weed seedbank abundance. Weed Research 2011, 51:422-432.
6. Bohan D.A., Haughton A.J. Effects of local landscape richness on in-field weed metrics across the Great Britain scale. Agriculture, Ecosystems & Environment 2012, 158:208-215.
7. Buhler D.D., Hartzler R.G., Forcella F. Implications of weed seedbank dynamics to weed management. Weed Science 1997, 45:329-336.
8. Burnham K.P., Anderson D.R. Model Selection and Multimodel Inference: A Practical Information-Theoric Approach 2002, Springer Verlag, New York. second ed.
9. Butault, J.P., Dedryver, C.A., Gary, C., Guichard, L., Jacquet, F., Meynard, J.M., Nicot, P., Pitrat, M., Reau, R., Sauphanor, B., Savini, I., Volay, T., 2010. Ecophyto R&D Quelles voies pour réduire l'usage des pesticides? Synthèse du rapport d'étude, INRA Editeur, France.
10. Cardina J., Herms C.P., Doohan D.J. Crop rotation and tillage system effects on weed seedbanks. Weed Science 2002, 50:448-460.
11. Colbach N., Kustjens D.A.G., Munier-Jolain N.M., Dalbiès A., Doré T. Assessing non-chemical weeding strategies through mechanistic modelling of blackgrass (Alopecurus myosuroides Huds.) dynamics. European Journal of Agronomy 2010, 32:205-218.
12. Cordeau S., Reboud X., Chauvel C. Farmers' fears and agro-economic evaluation of sown grass strips in France. Agronomy for Sustainable Development 2011, 31:463-473.
13. Cousens R., Wallinga J., Shaw M. Are the spatial patterns of weeds scale invariant?. Oikos 2004, 107:251-264.
14. Davis A.S., Renner K.A., Gross K.L. Weed seedbank and community shifts in a long-term cropping systems experiment. Weed Science 2005, 53:296-306.
15. Dupouey J.L., Dambrine E., Laffite J.D., Moares C. Irreversible impact of past land use on forest soils and biodiversity. Ecology 2002, 83:2978-2984.
16. Elith J., Leathwick J.R. Species distribution models: ecological explanation and prediction across space and time. Annual Review of Ecology, Evolution, and Systematics 2009, 40:677-697.
17. Fahrig L., Baudry J., Brotons L., Burel F.G., Crist T.O., Fuller R.J., Sirami C., Siriwardena G.M., Martin J.-L. Functional landscape heterogeneity and animal biodiversity in agricultural landscapes. Ecology Letters 2011, 14:101-112.
18. Forey E., Dutoit T. Vegetation, soils and seed banks of limestone grasslands are still impacted by former cultivation one century after abandonment. Community Ecology 2012, 13:194-202.
19. Freckleton R.P., Watkinson A.R. Large-scale spatial dynamics of plants: metapopulations, regional ensembles and patchy populations. Journal of Ecology 2002, 90:419-434.
20. Fried G., Norton L.R., Reboud X. Environmental and management factors determining weed species composition and diversity in France. Agriculture, Ecosystems & Environment 2008, 128:68-76.
21. Fried G., Petit S., Reboud X. A specialist-generalist classification of the arable flora and its response to changes in agricultural practices. BMC Ecology 2010, 10:1-20.
22. Gaba S., Chauvel B., Dessaint F., Bretagnolle V., Petit S. Weed species richness in winter wheat increases with landscape heterogeneity. Agriculture, Ecosystems & Environment 2010, 138:318-323.
23. Gabriel D., Thies C., Tscharntke T. Local diversity of arable weeds increases with landscape complexity. Perspectives in Plant Ecology, Evolution and Systematics 2005, 7:85-93.
24. Gazol A., Tamme R., Takkis K., Kasari L., Saar L., Helm A., Pärtel M. Landscape- and small-scale determinants of grassland species diversity: direct and indirect influences. Ecography 2012, 35:944-951.
25. González-Díaz L., van den Berg F., van den Bosch F., González-Andújar J.L. Controlling annual weeds in cereals by deploying crop rotation at the landscape scale. Ecological Applications 2012, 22:982-992.
26. Guerrero I., Martínez P., Morales M.B., Onate J.J. Influence of agricultural factors on weed, carabid and bird richness in a Mediterranean cereal cropping system. Agriculture, Ecosystems & Environment 2010, 138:103-108.
27. Guisan A., Zimmermann N.E. Predictive habitat distribution models in ecology. Ecological Modelling 2000, 135:147-186.
28. Guisan A., Thuiller W. Predicting species distribution: offering more than simple habitat models. Ecology Letters 2005, 8:993-1009.
29. Gunton R.M., Petit S., Gaba S. Functional traits relating arable weed communities to crop characteristics. Journal of Vegetation Science 2011, 22:541-550.
30. Gustavsson E., Lennartsson T., Emanuelsson M. Land use more than 200 years ago explain current grassland plant diversity in a Swedish agricultural landscape. Biological Conservation 2007, 138:47-59.
31. Hanski I., Ovaskainen O. Extinction debt at extinction threshold. Conservation Biology 2002, 16:666-673.
32. Hastie T., Tibshirani R., Friedman J. The Elements of Statistical Learning: Data Mining, Inference and Prediction 2009, Springer Verlag, New York.
33. Hodgson J.A., Moilanen A., Thomas C.D. Metapopulation responses to patch connectivity and quality are masked by successional habitat dynamics. Ecology 2009, 90:1608-1619.
34. Holzschuh A., Steffan-Dewenter I., Kleijn D., Tscharnke T. Diversity of flower-visiting bees in cereal fields: effects of farming system, landscape composition and regional context. Journal of Applied Ecology 2007, 44:41-49.
35. Holst N., Rasmussen I.A., Bastiaans L. Field weed population dynamics: a review of model approaches and applications. Weed Research 2007, 47:1-14.
36. Jauzein, P., 1995. Flore des champs cultivés, SOPRA, INRA, France.
37. José-Maria L., Armengot L., Blanco-Moreno J.M., Montserrat B., Sans F.X. Effects of agricultural intensification on plant diversity in Mediterranean dryland cereal fields. Journal of Applied Ecology 2010, 47:832-840.
38. Julve, P., 1998. Baseflor. Index botanique, écologique et chorologique de la flore de France. Version: 31/08/2007. http://perso.wanadoo.fr/philippe.julve/catminat.htm.
39. Koyanagi T., Kusumoto Y., Yamamoto S., Okubo S., Iwasaki N., Takeushi K. Grassland plant functional groups exhibit distinct time-lags in response to historical landscape change. Plant Ecology 2012, 213:327-338.
40. Légère A., Stevenson F.C., Benoit D.L. The selective memory of weed seedbanks after 18 years of conservation tillage. Weed Science 2011, 59:98-106.
41. Lindborg R. Evaluating the distribution of plant life-history traits in relation to current and historical landscape configurations. Journal of Ecology 2007, 95:555-564.
42. Lososová Z., Chytrý M., Cimalová Š., Kropáč Z., Otýpková Z., Pyšek P., Tichý L. Weed vegetation of arable land in Central Europe: gradients of diversity and species composition. Journal of Vegetation Science 2004, 15:415-422.
43. Marchetto K.M., Jongejans E., Shea K., Isar S.A. Plant spatial arrangement affects projected invasion speeds of two invasive thistles. Oikos 2010, 119:1462-1468.
44. Marshall E.J.P. The impact of landscape structure and sown grass margin strips on weed assemblages in arable crops and their boundaries. Weed Research 2009, 49:107-115.
45. Milberg P., Hallgren E., Palmer M.W. Timing of disturbance and vegetation development: how sowing date affects the weed flora in spring-sown crops. Journal of Vegetation Science 2001, 12:93-98.
46. Munier-Jolain N.M., Deytieux V., Guillemin J.-P., Granger S., Gaba S. Multi-criteria evaluation of cropping systems prototypes. Proceedings of the XIIIe Conference on Weed Biology 2009, 10.
47. Murphy S.D., Clements D.R., Belaoussoff S., Kevan P.G., Swanton C.J. Promotion of weed species diversity and reduction of weed seedbanks with conservation tillage and crop rotation. Weed Science 2006, 54:69-77.
48. O'Rourke M.E., Jones L.E. Analysis of landscape-scale insect pest dynamics and pesticide use: an empirical and modelling study. Ecological Applications 2011, 21:3199-3210.
49. Park S.E., Benjamin L.R., Watkinson A.R. The theory and application of plant competition models: an agronomic perspective. Annals of Botany 2003, 92:741-748.
50. Pearce J., Ferrier S. Evaluating the predictive performance of habitat models developed using logistic regression. Ecological Modelling 2000, 133:225-245.
51. Petit S., Burel F. Effects of landscape dynamics on the metapopulation of a ground beetle (Coleoptera, Carabidae) in a hedgerow network. Agriculture, Ecosystems & Environment 1998, 69:243-252.
52. Petit S., Haysom K., Pywell R., Warman L., Allen D., Booth R., Firbank L. Habitat-based models for predicting the occurrence of ground-beetles in arable landscapes: two alternative approaches. Agriculture, Ecosystems & Environment 2003, 95:19-28.
53. Petit S., Alignier A., Colbach N., Joannon A., Le Cœur D., Thenail C. Weed dispersal by farming at various spatial scales. A review. Agronomy for Sustainable Development 2012, 10.1007/s13593-012-0095-8.
54. Piessens K., Hermy M. Does the heathland flora in north-western Belgium show an extinction debt?. Biological Conservation 2006, 132:382-394.
55. Poggio S.L., Chaneton E.J., Ghersa C.M. Landscape complexity differentially affects alpha, beta, and gamma diversities of plants occurring in fencerows and crop fields. Biological Conservation 2010, 143:2477-2486.
56. R.Development Core Team R: A Language and Environment for Statistical Computing 2010, R Foundation for Statistical Computing, Vienna, Austria.
57. Sans F.X., Berner A., Armengot L., Mäder P. Tillage effects on weed communities in an organic winter wheat-sunflower-spelt cropping sequence. Weed Research 2011, 51:413-421.
58. Schmucki R., Reimark J., Lindborg R., Cousins S.A.O. Landscape context and management regime structure plant diversity in grassland communities. Journal of Ecology 2012, 100:1164-1173.
59. Sester M., Dürr C., Darmency H., Colbach N. Modelling the effects of cropping systems on the seed bank dynamics and the emergence of weed beet. Ecological Modelling 2007, 204:47-58.
60. Shrestha A., Knezevic S.Z., Roy R.C., Ball-Coelho B.R., Swanton C.J. Effect of tillage, cover crop and crop rotation on the composition of weed flora in a sandy soil. Weed Research 2002, 42:76-87.
61. Smolik M.G., Dullinger S., Essl F., Kleinbauer I., Leitner M., Peterseil J., Stadler L.-M., Vogl G. Integrating species distribution models and interacting particle systems to predict the spread of an invasive plant species. Journal of Biogeography 2010, 37:411-422.
62. Sosnoskie L.M., Herms C.P., Cardina J. Weed seedbank community composition in a 35-yr-old tillage and rotation experiment. Weed Science 2006, 54:263-273.
63. Steiner N.C., Kölher W. Effects of landscape patterns on species richness - a modelling approach. Agriculture, Ecosystems & Environment 2003, 98:353-361.
64. Swets J. Measuring the accuracy of diagnostic systems. Science 1988, 240:1285-1293.
65. Thompson K., Bakker J., Bekker R. The Soil Seed Banks of North West Europe: Methodology, Density and Longevity 1997, Cambridge University Press, Cambridge.
66. Vinatier F., Tixier P., Le Page C., Duyck P.-F., Lescourret F. COSMOS, a spatially explicit model to simulate the epidemiology of Cosmopolites sordidus in banana fields. Ecological Modelling 2009, 220:2244-2254.
67. Wiens J.A. Predicting species occurrences: progress, problems and prospects. Predicting Species Occurrences: Issues of Accuracy and Scale 2002, 739-749. Island Press, Covelo, CA. J.M. Scott, P.J. Heglund, M.L. Morrison, J.B. Haufler, M.G. Raphael, W.A. Wall, F.B. Samson (Eds.).