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Volumn 91, Issue 6, 2013, Pages 2504-2511

2011 and 2012 Early Careers Achievement Awards: Use of genomic biology to study companion animal intestinal microbiota

Author keywords

Canine; Feline; Genomics; Microbiome

Indexed keywords

ANIMAL; ANIMAL DISEASE; ARTICLE; CAT; CAT DISEASE; DIET; DNA SEQUENCE; DOG; DOG DISEASE; FECES; INTESTINE; MICROBIOLOGY; MICROFLORA;

EID: 84882651700     PISSN: 00218812     EISSN: 15253163     Source Type: Journal    
DOI: 10.2527/jas.2012-6225     Document Type: Article
Times cited : (10)

References (57)
  • 1
    • 77958531776 scopus 로고    scopus 로고
    • Effects of a novel galactooligosaccharide on the faecal mi-crobiota of healthy and inflammatory bowel disease cats during a randomized, double-blind, cross-over feeding study
    • Abecia, L. H., L. Hoyles, C. Khoo, N. Frantz, and A. L. McCartney. 2010. Effects of a novel galactooligosaccharide on the faecal mi-crobiota of healthy and inflammatory bowel disease cats during a randomized, double-blind, cross-over feeding study. Int. J. Probi-otics Prebiotics 5:61-68.
    • (2010) Int. J. Probi-otics Prebiotics , vol.5 , pp. 61-68
    • Abecia, L.H.1    Hoyles, L.2    Khoo, C.3    Frantz, N.4    McCartney, A.L.5
  • 4
    • 84877718504 scopus 로고    scopus 로고
    • Fecal microbial communities of healthy adult dogs fed raw meat-based diets with or without inu-lin or yeast cell wall extracts as assessed by 454 pyrosequencing
    • (in press). [Epub ahead of print Jan. 29, 2013]. doi:10.1111/1574-6941.12081
    • Beloshapka, A. N., S. E. Dowd, J. S. Suchodolski, J. M. Steiner, L. Du-clos, and K. S. Swanson. 2013. Fecal microbial communities of healthy adult dogs fed raw meat-based diets with or without inu-lin or yeast cell wall extracts as assessed by 454 pyrosequencing. FEMS Microbiol. Ecol. (in press). [Epub ahead of print Jan. 29, 2013]. doi:10.1111/1574-6941.12081
    • (2013) FEMS Microbiol. Ecol
    • Beloshapka, A.N.1    Dowd, S.E.2    Suchodolski, J.S.3    Steiner, J.M.4    Du-Clos, L.5    Swanson, K.S.6
  • 6
    • 84856747520 scopus 로고    scopus 로고
    • A molecular enrichment strategy based on cpn60 for detection of epsilon-proteobacteria in the dog fecal microbiome
    • Chaban, B., M. G. Links, and J. E. Hill. 2012. A molecular enrichment strategy based on cpn60 for detection of epsilon-proteobacteria in the dog fecal microbiome. Microbiol. Ecol. 63:348-357.
    • (2012) Microbiol. Ecol , vol.63 , pp. 348-357
    • Chaban, B.1    Links, M.G.2    Hill, J.E.3
  • 7
    • 67349174279 scopus 로고    scopus 로고
    • Charac-terization and quantification of feline fecal microbiota using cpn60 sequence-based methods and investigation of animal-to-animal variation in microbial population structure
    • Desai, A. R., K. M. Musil, A. P. Carr, and J. E. Hill. 2009. Charac-terization and quantification of feline fecal microbiota using cpn60 sequence-based methods and investigation of animal-to-animal variation in microbial population structure. Vet. Microbiol. 137:120-128.
    • (2009) Vet. Microbiol , vol.137 , pp. 120-128
    • Desai, A.R.1    Musil, K.M.2    Carr, A.P.3    Hill, J.E.4
  • 8
    • 34247882011 scopus 로고    scopus 로고
    • Interactions and competition within microbial community of the human colon: Links between diet and health
    • Flint, H. J., S. H. Duncan, K. P. Scott, and P. Louis. 2007. Interactions and competition within microbial community of the human colon: Links between diet and health. Environ. Microbiol. 9:1101-1111.
    • (2007) Environ. Microbiol , vol.9 , pp. 1101-1111
    • Flint, H.J.1    Duncan, S.H.2    Scott, K.P.3    Louis, P.4
  • 9
    • 77957603468 scopus 로고    scopus 로고
    • The role of bacteria in the pathogenesis of inflammatory bowel disease
    • Friswell, M., B. Campbell, and J. Rhodes. 2010. The role of bacteria in the pathogenesis of inflammatory bowel disease. Gut Liver 4:295-306.
    • (2010) Gut Liver , vol.4 , pp. 295-306
    • Friswell, M.1    Campbell, B.2    Rhodes, J.3
  • 11
    • 79953786183 scopus 로고    scopus 로고
    • Massive parallel 16S rRNA gene pyrosequenc-ing reveals highly diverse fecal bacterial and fungal communities in healthy dogs and cats
    • Handl, S., S. Dowd, J. F. Garcia-Mazcorro, J. M. Steiner, and J. S. Suchodolski. 2011. Massive parallel 16S rRNA gene pyrosequenc-ing reveals highly diverse fecal bacterial and fungal communities in healthy dogs and cats. FEMS Microbiol. Ecol. 76:301-310.
    • (2011) FEMS Microbiol. Ecol , vol.76 , pp. 301-310
    • Handl, S.1    Dowd, S.2    Garcia-Mazcorro, J.F.3    Steiner, J.M.4    Suchodolski, J.S.5
  • 16
    • 60749093409 scopus 로고    scopus 로고
    • Com-parison of the guaranteed analysis with the measured nutrient composition of commercial pet foods
    • Hill, R. C., C. J. Choate, K. C. Scott, and G. Molenberghs. 2009. Com-parison of the guaranteed analysis with the measured nutrient composition of commercial pet foods. J. Am. Vet. Med. Assoc. 234:347-351.
    • (2009) J. Am. Vet. Med. Assoc , vol.234 , pp. 347-351
    • Hill, R.C.1    Choate, C.J.2    Scott, K.C.3    Molenberghs, G.4
  • 17
    • 85028112350 scopus 로고    scopus 로고
    • The gut microbiome of kittens is affected by dietary protein: Carbohydrate ratio and associated with blood metabolite and hormone concentrations
    • Hooda, S., B. M. Vester Boler, K. R. Kerr, S. E. Dowd, and K. S. Swan-son. 2013. The gut microbiome of kittens is affected by dietary protein: Carbohydrate ratio and associated with blood metabolite and hormone concentrations. Br. J. Nutr. 109:1637-1646.
    • (2013) Br. J. Nutr , vol.109 , pp. 1637-1646
    • Hooda, S.1    Vester Boler, B.M.2    Kerr, K.R.3    Dowd, S.E.4    Swan-Son, K.S.5
  • 18
    • 0035793372 scopus 로고    scopus 로고
    • Molecular analysis of commensal host-microbial relationships in the intestine
    • Hooper, L. V., M. H. Wong, A. Thelin, L. Hansson, P. G. Falk, and J. I. Gordon. 2001. Molecular analysis of commensal host-microbial relationships in the intestine. Science 291:881-884.
    • (2001) Science , vol.291 , pp. 881-884
    • Hooper, L.V.1    Wong, M.H.2    Thelin, A.3    Hansson, L.4    Falk, P.G.5    Gordon, J.I.6
  • 19
    • 33846053579 scopus 로고    scopus 로고
    • Molecular characterisation of the gut microflora of healthy and inflammatory bowel disease cats using fluorescence in situ hybridisation with special reference to Desulfovibrio spp
    • Inness, V. L., A. L. McCartney, C. Khoo, K. L. Gross, and G. R. Gibson. 2007. Molecular characterisation of the gut microflora of healthy and inflammatory bowel disease cats using fluorescence in situ hybridisation with special reference to Desulfovibrio spp. J. Anim. Physiol. Anim. Nutr. 91:48-53.
    • (2007) J. Anim. Physiol. Anim. Nutr , vol.91 , pp. 48-53
    • Inness, V.L.1    McCartney, A.L.2    Khoo, C.3    Gross, K.L.4    Gibson, G.R.5
  • 25
    • 84856298837 scopus 로고    scopus 로고
    • Apparent total tract energy and macronutrient digest-ibility and fecal fermentative end-product concentrations of do-mestic cats fed extruded, raw-beef based, and cooked beef-based diets
    • Kerr, K. R., B. M. Vester Boler, C. L. Morris, K. J. Liu, and K. S. Swan-son. 2012. Apparent total tract energy and macronutrient digest-ibility and fecal fermentative end-product concentrations of do-mestic cats fed extruded, raw-beef based, and cooked beef-based diets. J. Anim. Sci. 90:515-522.
    • (2012) J. Anim. Sci , vol.90 , pp. 515-522
    • Kerr, K.R.1    Vester Boler, B.M.2    Morris, C.L.3    Liu, K.J.4    Swan-Son, K.S.5
  • 26
    • 0030661563 scopus 로고    scopus 로고
    • Character-ization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu, W. T., T. L. Marsh, H. Cheng, and L. J. Forney. 1997. Character-ization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63:4516-4522.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 4516-4522
    • Liu, W.T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 27
    • 33845901507 scopus 로고    scopus 로고
    • Microbial ecology: Human gut mictrobes associated with obesity
    • Ley, R. E., P. J. Turnbaugh, S. Klein, and J. I. Gordon. 2006. Microbial ecology: Human gut mictrobes associated with obesity. Nature 444:1022-1023.
    • (2006) Nature , vol.444 , pp. 1022-1023
    • Ley, R.E.1    Turnbaugh, P.J.2    Klein, S.3    Gordon, J.I.4
  • 28
    • 58149327025 scopus 로고    scopus 로고
    • Dietary protein concentration affects intestinal microbiota of adult cats: A study using DGGE and qPCR to evaluate differences in microbial populations in the feline gastrointestinal tract
    • Lubbs, D. C., B. M. Vester, N. D. Fastinger, and K. S. Swanson. 2009. Dietary protein concentration affects intestinal microbiota of adult cats: A study using DGGE and qPCR to evaluate differences in microbial populations in the feline gastrointestinal tract. J. Anim. Physiol. Anim. Nutr. (Berl.). 93:113-121.
    • (2009) J. Anim. Physiol. Anim. Nutr. (Berl.) , vol.93 , pp. 113-121
    • Lubbs, D.C.1    Vester, B.M.2    Fastinger, N.D.3    Swanson, K.S.4
  • 29
    • 0032956143 scopus 로고    scopus 로고
    • Developmental mi-crobial ecology of the neonatal gastrointestinal tract
    • Mackie, R. I., A. Shir, and H. R. Gaskins. 1999. Developmental mi-crobial ecology of the neonatal gastrointestinal tract. Am. J. Clin. Nutr. 69:1035S-1045S.
    • (1999) Am. J. Clin. Nutr , vol.69
    • MacKie, R.I.1    Shir, A.2    Gaskins, H.R.3
  • 30
    • 33745636525 scopus 로고    scopus 로고
    • Effects of Lactobacillus acidophilus DSM13241 as a probi-otic in healthy adult cats
    • Marshall-Jones, Z. V., M. L. Baillon, J. M. Croft, and R. F. Butterwick. 2006. Effects of Lactobacillus acidophilus DSM13241 as a probi-otic in healthy adult cats. Am. J. Vet. Res. 67:1005-1012.
    • (2006) Am. J. Vet. Res , vol.67 , pp. 1005-1012
    • Marshall-Jones, Z.V.1    Baillon, M.L.2    Croft, J.M.3    Butterwick, R.F.4
  • 31
    • 78751595975 scopus 로고    scopus 로고
    • Phylogenetic characterization of fecal microbial communities of dogs fed diets with or without supplemental dietary fiber using 454 pyrosequencing
    • Middelbos, I. S., B. M. Vester Boler, A. Qu, B. A. White, K. S. Swan-son, and G. C. Fahey Jr. 2010. Phylogenetic characterization of fecal microbial communities of dogs fed diets with or without supplemental dietary fiber using 454 pyrosequencing. PLoS ONE 5:e9768.
    • (2010) PLoS ONE , vol.5
    • Middelbos, I.S.1    Vester Boler, B.M.2    Qu, A.3    White, B.A.4    Swan-Son, K.S.5    Fahey Jr., G.C.6
  • 32
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel elec-trophoresis analysis of polymerase chain reaction-amplified genes encoding for 16S rRNA
    • Muyzer, G., E. C. de Waal, and A. G. Uitterlinden. 1993. Profiling of complex microbial populations by denaturing gradient gel elec-trophoresis analysis of polymerase chain reaction-amplified genes encoding for 16S rRNA. Appl. Environ. Microbiol. 59:695-700.
    • (1993) Appl. Environ. Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 34
    • 0022446922 scopus 로고
    • Cytogenetic analysis us-ing quantitative, high-sensitivity, fluorescence hybridization
    • Pinkel, D., T. Straume, and J. W. Gray. 1986. Cytogenetic analysis us-ing quantitative, high-sensitivity, fluorescence hybridization. Proc. Natl. Acad. Sci. USA 83:2934-2938.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 2934-2938
    • Pinkel, D.1    Straume, T.2    Gray, J.W.3
  • 35
    • 84856388106 scopus 로고    scopus 로고
    • Estimation of the dietary nutrient profile of free-roaming feral cats: Possible im-plications for nutrition of domestic cats
    • Plantinga, E. A., G. Bosch, and W. H. Hendriks. 2011. Estimation of the dietary nutrient profile of free-roaming feral cats: Possible im-plications for nutrition of domestic cats. Br. J. Nutr. 106:S35-S48.
    • (2011) Br. J. Nutr , vol.106
    • Plantinga, E.A.1    Bosch, G.2    Hendriks, W.H.3
  • 36
    • 84855717841 scopus 로고    scopus 로고
    • Prevalence of se-lected bacterial and parasitic agents in feces from diarrheic and healthy control cats from northern California
    • Queen, E. V., S. L. Marks, and T. B. Farver. 2012. Prevalence of se-lected bacterial and parasitic agents in feces from diarrheic and healthy control cats from northern California. J. Vet. Int. Med. 26:54-60.
    • (2012) J. Vet. Int. Med , vol.26 , pp. 54-60
    • Queen, E.V.1    Marks, S.L.2    Farver, T.B.3
  • 37
    • 33747155832 scopus 로고    scopus 로고
    • The gastrointes-tinal microbiota and its role in monogastric nutrition and health with an emphasis on pigs: Current understanding, possible modu-lations and new technologies for ecological studies
    • Richards, J. D., J. Gong, and C. F. M. de Lange. 2005. The gastrointes-tinal microbiota and its role in monogastric nutrition and health with an emphasis on pigs: Current understanding, possible modu-lations and new technologies for ecological studies. Can. J. Anim. Sci. 85:421-435.
    • (2005) Can. J. Anim. Sci , vol.85 , pp. 421-435
    • Richards, J.D.1    Gong, J.2    de Lange, C.F.M.3
  • 38
    • 0037445321 scopus 로고    scopus 로고
    • Fluorescent hybridization combined with flow cytometry and hybridization of total RNA to analyse the composition of microbial communities in human fecal samples using 16S rRNA probes
    • Rigottier-Gois, L., A. G. Le Bourhis, G. Gramet, V. Rochet, and J. Doré. 2003. Fluorescent hybridization combined with flow cytometry and hybridization of total RNA to analyse the composition of microbial communities in human fecal samples using 16S rRNA probes. FEMS Microbiol. Ecol. 43:237-245.
    • (2003) FEMS Microbiol. Ecol , vol.43 , pp. 237-245
    • Rigottier-Gois, L.1    Le Bourhis, A.G.2    Gramet, G.3    Rochet, V.4    Doré, J.5
  • 39
    • 77954816352 scopus 로고    scopus 로고
    • Characterization of fecal microbiota in cats us-ing universal 16S rRNA gene and group-specific primers for Lac-tobacillus and Bifidobacterium spp
    • Ritchie, L. E., K. F. Burke, J. F. Garcia-Mazcorro, J. M. Steiner, and J. S. Suchodolski. 2010. Characterization of fecal microbiota in cats us-ing universal 16S rRNA gene and group-specific primers for Lac-tobacillus and Bifidobacterium spp. Vet. Microbiol. 144:140-146.
    • (2010) Vet. Microbiol , vol.144 , pp. 140-146
    • Ritchie, L.E.1    Burke, K.F.2    Garcia-Mazcorro, J.F.3    Steiner, J.M.4    Suchodolski, J.S.5
  • 40
    • 55949083970 scopus 로고    scopus 로고
    • Assessment of microbial diversity along the feline intestinal tract using 16S rRNA gene analysis
    • Ritchie, L. E., J. M. Steiner, and J. S. Suchodolski. 2008. Assessment of microbial diversity along the feline intestinal tract using 16S rRNA gene analysis. FEMS Microbiol. Ecol. 66:590-598.
    • (2008) FEMS Microbiol. Ecol , vol.66 , pp. 590-598
    • Ritchie, L.E.1    Steiner, J.M.2    Suchodolski, J.S.3
  • 41
    • 50249150207 scopus 로고    scopus 로고
    • Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities
    • Schütte, U. M. E., Z. Abdo, S. J. Bent, C. Shyu, C. J. Williams, J. D. Pierson, and L. J. Forney. 2008. Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities. Appl. Microbiol. Biotechnol. 80:365-380.
    • (2008) Appl. Microbiol. Biotechnol , vol.80 , pp. 365-380
    • Schütte, U.M.E.1    Abdo, Z.2    Bent, S.J.3    Shyu, C.4    Williams, C.J.5    Pierson, J.D.6    Forney, L.J.7
  • 42
    • 80051843019 scopus 로고    scopus 로고
    • Companion animal symposium: Mi-crobes and gastrointestinal health of dogs and cats
    • Suchodolski, J. S. 2011a. Companion animal symposium: Mi-crobes and gastrointestinal health of dogs and cats. J. Anim. Sci. 89:1520-1530.
    • (2011) J. Anim. Sci , vol.89 , pp. 1520-1530
    • Suchodolski, J.S.1
  • 43
    • 79953842476 scopus 로고    scopus 로고
    • Intestinal microbiota of dogs and cats: A big-ger world than we thought
    • Suchodolski, J. S. 2011b. Intestinal microbiota of dogs and cats: A big-ger world than we thought. Vet. Clin. North Am. Small Anim. Pract. 41:261-272.
    • (2011) Vet. Clin. North Am. Small Anim. Pract , vol.41 , pp. 261-272
    • Suchodolski, J.S.1
  • 44
    • 55949125046 scopus 로고    scopus 로고
    • Analysis of bacterial diversity in the canine duodenum, jejunum, ileum, and colon by comparative 16S rRNA gene analysis
    • Suchodolski, J. S., J. Camacho, and J. M. Steiner. 2008a. Analysis of bacterial diversity in the canine duodenum, jejunum, ileum, and colon by comparative 16S rRNA gene analysis. FEMS Microbiol. Ecol. 66:567-578.
    • (2008) FEMS Microbiol. Ecol , vol.66 , pp. 567-578
    • Suchodolski, J.S.1    Camacho, J.2    Steiner, J.M.3
  • 45
    • 84862499724 scopus 로고    scopus 로고
    • 16S rRNA gene pyrosequencing reveals bacterial dysbiosis in the duodenum of dogs with idiopathic inflammatory bowel disease
    • Suchodolski, J. S., S. E. Dowd, V. Wilke, J. M. Steiner, and A. E. Jergens. 2012a. 16S rRNA gene pyrosequencing reveals bacterial dysbiosis in the duodenum of dogs with idiopathic inflammatory bowel disease. PLoS ONE 7:e39333.
    • (2012) PLoS ONE , vol.7
    • Suchodolski, J.S.1    Dowd, S.E.2    Wilke, V.3    Steiner, J.M.4    Jergens, A.E.5
  • 49
    • 77952092389 scopus 로고    scopus 로고
    • Molecular analysis of the bacterial microbiota in duodenal biopsies from dogs with idiopathic inflammatory bowel disease
    • Suchodolski, J. S., P. G. Xenoulis, C. G. Paddock, J. M. Steiner, and A. E. Jergens. 2010. Molecular analysis of the bacterial microbiota in duodenal biopsies from dogs with idiopathic inflammatory bowel disease. Vet. Microbiol. 142:394-400.
    • (2010) Vet. Microbiol , vol.142 , pp. 394-400
    • Suchodolski, J.S.1    Xenoulis, P.G.2    Paddock, C.G.3    Steiner, J.M.4    Jergens, A.E.5
  • 51
    • 84857238169 scopus 로고    scopus 로고
    • Gene-centric metagenomics analysis of feline intestinal microbiome using 454 junior pyrosequencing
    • Tun, H. M., M. S. Brar, N. Khin, L. Jun, R. K. Hui, S. E. Dowd, and F. C. Leung. 2012. Gene-centric metagenomics analysis of feline intestinal microbiome using 454 junior pyrosequencing. J. Micro-biol. Methods 88:369-376.
    • (2012) J. Micro-biol. Methods , vol.88 , pp. 369-376
    • Tun, H.M.1    Brar, M.S.2    Khin, N.3    Jun, L.4    Hui, R.K.5    Dowd, S.E.6    Leung, F.C.7
  • 52
    • 41849127118 scopus 로고    scopus 로고
    • Diet-induced obesity is linked to marked by reversible alterations in the mouse distal gut microbiome
    • Turnbaugh, P. J., F. Backhed, L. Fulton, and J. I. Gordon. 2008. Diet-induced obesity is linked to marked by reversible alterations in the mouse distal gut microbiome. Cell Host Microbe 3:213-223.
    • (2008) Cell Host Microbe , vol.3 , pp. 213-223
    • Turnbaugh, P.J.1    Backhed, F.2    Fulton, L.3    Gordon, J.I.4
  • 54
    • 84866174523 scopus 로고    scopus 로고
    • Genomic approaches to studying the human microbiota
    • Weinstock, G. M. 2012. Genomic approaches to studying the human microbiota. Nature 489:250-256.
    • (2012) Nature , vol.489 , pp. 250-256
    • Weinstock, G.M.1
  • 56
    • 55949129085 scopus 로고    scopus 로고
    • Molecular-phylogenetic char-acterization of microbial communities imbalances in the small intestine of dogs with inflammatory bowel disease
    • Xenoulis, P. G., B. Palculict, K. Allenspach, J. M. Steiner, A. M. Van House, and J. S. Suchodolski. 2008. Molecular-phylogenetic char-acterization of microbial communities imbalances in the small intestine of dogs with inflammatory bowel disease. FEMS Micro-biol. Ecol. 66:579-589.
    • (2008) FEMS Micro-biol. Ecol , vol.66 , pp. 579-589
    • Xenoulis, P.G.1    Palculict, B.2    Allenspach, K.3    Steiner, J.M.4    Van House, A.M.5    Suchodolski, J.S.6
  • 57
    • 0031684010 scopus 로고    scopus 로고
    • Tem-perature gradient gel electrophoresis analysis from human fecal samples reveals stable and host-specific communities of active bacteria
    • Zoetendal, E. G., A. D. L. Akkermans, and W. M. de Vos. 1998. Tem-perature gradient gel electrophoresis analysis from human fecal samples reveals stable and host-specific communities of active bacteria. Appl. Environ. Microbiol. 64:3854-3859.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 3854-3859
    • Zoetendal, E.G.1    Akkermans, A.D.L.2    de Vos, W.M.3


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