-
1
-
-
0036686753
-
Review article: the role of the gut flora in health and disease, and its modification as therapy
-
10.1046/j.1365-2036.2002.01310.x, 12182739
-
Hart AL, Stagg AJ, Frame M, Graffner H, Glise H, Falk P, Kamm MA. Review article: the role of the gut flora in health and disease, and its modification as therapy. Aliment Pharmacol Ther 2002, 16:1383-1393. 10.1046/j.1365-2036.2002.01310.x, 12182739.
-
(2002)
Aliment Pharmacol Ther
, vol.16
, pp. 1383-1393
-
-
Hart, A.L.1
Stagg, A.J.2
Frame, M.3
Graffner, H.4
Glise, H.5
Falk, P.6
Kamm, M.A.7
-
2
-
-
34247638427
-
Impact of diet on the intestinal microbiota in 10-month-old infants
-
Nielsen S, Nielsen DS, Lauritzen L, Jakobsen M, Michaelsen KF. Impact of diet on the intestinal microbiota in 10-month-old infants. J Ped Gastroent Nutr 2007, 44:613-618.
-
(2007)
J Ped Gastroent Nutr
, vol.44
, pp. 613-618
-
-
Nielsen, S.1
Nielsen, D.S.2
Lauritzen, L.3
Jakobsen, M.4
Michaelsen, K.F.5
-
3
-
-
1342289679
-
Nutritional management of gastrointestinal disease
-
Zoran D. Nutritional management of gastrointestinal disease. Clin Tech Small Anim Practice 2003, 18:211-217.
-
(2003)
Clin Tech Small Anim Practice
, vol.18
, pp. 211-217
-
-
Zoran, D.1
-
4
-
-
3543091532
-
Dietary protein source and manufacturing processes affect macronutrient digestibility, fecal consistency and presence of fecal Clostridium perfringens in adult dogs
-
Zentek J, Fricke S, Hewicker-Trautwein M, Ehinger B, Amtsberg G, Baums C. Dietary protein source and manufacturing processes affect macronutrient digestibility, fecal consistency and presence of fecal Clostridium perfringens in adult dogs. J Nutr 2004, 134:2158-2161.
-
(2004)
J Nutr
, vol.134
, pp. 2158-2161
-
-
Zentek, J.1
Fricke, S.2
Hewicker-Trautwein, M.3
Ehinger, B.4
Amtsberg, G.5
Baums, C.6
-
5
-
-
77954309212
-
Influence of some potential prebiotics and fibre-rich foodstuff on composition and activity of canine intestinal microbiota
-
Biagi G, Cipollini I, Grandi M, Zaghini G. Influence of some potential prebiotics and fibre-rich foodstuff on composition and activity of canine intestinal microbiota. Anim Feed Sci and Techn 2010, 159:50-58.
-
(2010)
Anim Feed Sci and Techn
, vol.159
, pp. 50-58
-
-
Biagi, G.1
Cipollini, I.2
Grandi, M.3
Zaghini, G.4
-
6
-
-
84867141946
-
Negative fecal characteristics are associated with pH and fecal flora alterations during dietary change in dogs
-
Wakshlag JJ, Simpson KW, Struble AM, Dowd SE. Negative fecal characteristics are associated with pH and fecal flora alterations during dietary change in dogs. Intern J Appl Res Vet Med 2011, 9:278-283.
-
(2011)
Intern J Appl Res Vet Med
, vol.9
, pp. 278-283
-
-
Wakshlag, J.J.1
Simpson, K.W.2
Struble, A.M.3
Dowd, S.E.4
-
7
-
-
0019518302
-
Diet and the human intestinal bacterial flora
-
Hill MJ. Diet and the human intestinal bacterial flora. Cancer Res 1981, 41:3778-3780.
-
(1981)
Cancer Res
, vol.41
, pp. 3778-3780
-
-
Hill, M.J.1
-
8
-
-
0242515761
-
Effects of dietary fat source and subtherapeutic levels of antibiotic on the bacterial community in the ileum of broiler chickens at various ages
-
Knarreborg A, Simon MA, Engberg RM, Jensen BB, Tannock GW. Effects of dietary fat source and subtherapeutic levels of antibiotic on the bacterial community in the ileum of broiler chickens at various ages. Appl Environ Mircobiol 2002, 68:5918-5924.
-
(2002)
Appl Environ Mircobiol
, vol.68
, pp. 5918-5924
-
-
Knarreborg, A.1
Simon, M.A.2
Engberg, R.M.3
Jensen, B.B.4
Tannock, G.W.5
-
9
-
-
33845508821
-
Dietary carbohydrate source influences molecular fingerprints of the rat faecal microbiota
-
10.1186/1471-2180-6-98, 1693562, 17137493
-
Licht TR, Hansen M, Poulsen M, Dragsted LO. Dietary carbohydrate source influences molecular fingerprints of the rat faecal microbiota. BMC Microbiol 2006, 6:98. 10.1186/1471-2180-6-98, 1693562, 17137493.
-
(2006)
BMC Microbiol
, vol.6
, pp. 98
-
-
Licht, T.R.1
Hansen, M.2
Poulsen, M.3
Dragsted, L.O.4
-
10
-
-
77950669604
-
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
-
Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI. The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med 2009, 1:6-14.
-
(2009)
Sci Transl Med
, vol.1
, pp. 6-14
-
-
Turnbaugh, P.J.1
Ridaura, V.K.2
Faith, J.J.3
Rey, F.E.4
Knight, R.5
Gordon, J.I.6
-
11
-
-
0036379525
-
Bacteriology of the Labrador gut: a cultural and genotypic approach
-
10.1046/j.1365-2672.2002.01724.x, 12234347
-
Greetham HL, Giffard C, Hutson RA, Collins MD, Gibson GR. Bacteriology of the Labrador gut: a cultural and genotypic approach. J Appl Microbiol 2002, 93:640-646. 10.1046/j.1365-2672.2002.01724.x, 12234347.
-
(2002)
J Appl Microbiol
, vol.93
, pp. 640-646
-
-
Greetham, H.L.1
Giffard, C.2
Hutson, R.A.3
Collins, M.D.4
Gibson, G.R.5
-
12
-
-
23744510358
-
Comparison between cultured small-intestinal and fecal microbiotas in Beagle dogs
-
10.1128/AEM.71.8.4169-4175.2005, 1183360, 16085799
-
Mentula S, Harmoinen J, Heikkilä M, Westermarck E, Rautio M, Huovinen P, Könönen E. Comparison between cultured small-intestinal and fecal microbiotas in Beagle dogs. Appl Environ Microbiol 2005, 71:4169-4175. 10.1128/AEM.71.8.4169-4175.2005, 1183360, 16085799.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 4169-4175
-
-
Mentula, S.1
Harmoinen, J.2
Heikkilä, M.3
Westermarck, E.4
Rautio, M.5
Huovinen, P.6
Könönen, E.7
-
13
-
-
55949125046
-
Analysis of bacterial diversity in the canine duodenum, jejunum, ileum, and colon by comparative16S rRNAgene analysis
-
10.1111/j.1574-6941.2008.00521.x, 18557939
-
Suchodolski JS, Camacho J, Steiner JM. Analysis of bacterial diversity in the canine duodenum, jejunum, ileum, and colon by comparative16S rRNAgene analysis. FEMS Microbiol Ecol 2008, 66:567-578. 10.1111/j.1574-6941.2008.00521.x, 18557939.
-
(2008)
FEMS Microbiol Ecol
, vol.66
, pp. 567-578
-
-
Suchodolski, J.S.1
Camacho, J.2
Steiner, J.M.3
-
14
-
-
0036692074
-
Characterization of fecal bacterial populations in canines: effect of age, breed and dietary fiber
-
10.1007/s00248-002-0001-z, 12087428
-
Simpson JM, Martineau B, Jones WE, Ballam JM, Mackie RJ. Characterization of fecal bacterial populations in canines: effect of age, breed and dietary fiber. Microb Ecol 2002, 44:186-197. 10.1007/s00248-002-0001-z, 12087428.
-
(2002)
Microb Ecol
, vol.44
, pp. 186-197
-
-
Simpson, J.M.1
Martineau, B.2
Jones, W.E.3
Ballam, J.M.4
Mackie, R.J.5
-
15
-
-
54349126970
-
High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota
-
10.1136/gut.2007.133603, 18941009
-
Zoetendal EG, Rajilic-Stojanovic M, de Vos WM. High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota. Gut 2008, 57:1605-1615. 10.1136/gut.2007.133603, 18941009.
-
(2008)
Gut
, vol.57
, pp. 1605-1615
-
-
Zoetendal, E.G.1
Rajilic-Stojanovic, M.2
de Vos, W.M.3
-
16
-
-
77951977802
-
Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis
-
10.1016/j.mimet.2010.02.007, 20171997
-
Salonen A, Nikkilä J, Jalanka-Tuovinen J, Immonen O, Rajilić-Stojanović M, Kekkonen RA, Palva A, de Vos WM. Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis. J Microbiol Methods 2010, 81:127-134. 10.1016/j.mimet.2010.02.007, 20171997.
-
(2010)
J Microbiol Methods
, vol.81
, pp. 127-134
-
-
Salonen, A.1
Nikkilä, J.2
Jalanka-Tuovinen, J.3
Immonen, O.4
Rajilić-Stojanović, M.5
Kekkonen, R.A.6
Palva, A.7
de Vos, W.M.8
-
17
-
-
27744506733
-
Assessment of the qualitative variation in bacterial microflora among compartments of the intestinal tract of dogs by use of a molecular fingerprinting technique
-
Suchodolski JS, Ruaux CG, Steiner JM, Fetz K, Williams DA. Assessment of the qualitative variation in bacterial microflora among compartments of the intestinal tract of dogs by use of a molecular fingerprinting technique. Am J Vet Research 2005, 66:1556-1562.
-
(2005)
Am J Vet Research
, vol.66
, pp. 1556-1562
-
-
Suchodolski, J.S.1
Ruaux, C.G.2
Steiner, J.M.3
Fetz, K.4
Williams, D.A.5
-
18
-
-
3843078402
-
GC fractionation enhances microbial community diversity assessment and detection of minority populations of bacteria by denaturing gradient gel electrophoresis
-
10.1128/AEM.70.4.2263-2270.2004, 383056, 15066821
-
Holben WE, Feris KP, Kettunen A, Apajalahti JHA. GC fractionation enhances microbial community diversity assessment and detection of minority populations of bacteria by denaturing gradient gel electrophoresis. Appl Environ Microbiol 2004, 70:2263-2270. 10.1128/AEM.70.4.2263-2270.2004, 383056, 15066821.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 2263-2270
-
-
Holben, W.E.1
Feris, K.P.2
Kettunen, A.3
Apajalahti, J.H.A.4
-
19
-
-
0035650509
-
Percent GC profiling accurately reveals diet-related differences in the gastrointestinal microbial community of broiler chickens
-
10.1128/AEM.67.12.5656-5667.2001, 93357, 11722920
-
Apajalahti JH, Kettunen A, Bedford MR, Holben WE. Percent GC profiling accurately reveals diet-related differences in the gastrointestinal microbial community of broiler chickens. Appl Environ Microbiol 2001, 67:5656-5667. 10.1128/AEM.67.12.5656-5667.2001, 93357, 11722920.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 5656-5667
-
-
Apajalahti, J.H.1
Kettunen, A.2
Bedford, M.R.3
Holben, W.E.4
-
20
-
-
0036795081
-
Culture-independent microbial community analysis reveals that inulin in the diet primarily affects previously unknown bacteria in the mouse cecum
-
10.1128/AEM.68.10.4986-4995.2002, 126397, 12324348
-
Apajalahti JH, Kettunen H, Kettunen A, Holben WE, Nurminen PH, Rautonen N, Mutanen M. Culture-independent microbial community analysis reveals that inulin in the diet primarily affects previously unknown bacteria in the mouse cecum. Appl Environ Microbiol 2002, 68:4986-4995. 10.1128/AEM.68.10.4986-4995.2002, 126397, 12324348.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 4986-4995
-
-
Apajalahti, J.H.1
Kettunen, H.2
Kettunen, A.3
Holben, W.E.4
Nurminen, P.H.5
Rautonen, N.6
Mutanen, M.7
-
21
-
-
34447104397
-
The fecal microbiota of irritable bowel syndrome patients differs significantly from that of healthy subjects
-
10.1053/j.gastro.2007.04.005, 17631127
-
Kassinen A, Krogius-Kurikka L, Makivuokko H, Rinttila T, Paulin L, Corander J, Malinen E, Apajalahti J, Palva A. The fecal microbiota of irritable bowel syndrome patients differs significantly from that of healthy subjects. Gastroenterology 2007, 133:24-33. 10.1053/j.gastro.2007.04.005, 17631127.
-
(2007)
Gastroenterology
, vol.133
, pp. 24-33
-
-
Kassinen, A.1
Krogius-Kurikka, L.2
Makivuokko, H.3
Rinttila, T.4
Paulin, L.5
Corander, J.6
Malinen, E.7
Apajalahti, J.8
Palva, A.9
-
22
-
-
65549084897
-
Sequence analysis of percent G + C fraction libraries of human faecal bacterial DNA reveals a high number of Actinobacteria
-
10.1186/1471-2180-9-68, 2679024, 19351420
-
Krogius-Kurikka L, Kassinen A, Paulin L, Corander J, Mäkivuokko H, Tuimala J, Palva A. Sequence analysis of percent G + C fraction libraries of human faecal bacterial DNA reveals a high number of Actinobacteria. BMC Microbiol 2009, 9:68. 10.1186/1471-2180-9-68, 2679024, 19351420.
-
(2009)
BMC Microbiol
, vol.9
, pp. 68
-
-
Krogius-Kurikka, L.1
Kassinen, A.2
Paulin, L.3
Corander, J.4
Mäkivuokko, H.5
Tuimala, J.6
Palva, A.7
-
23
-
-
0025855242
-
The control and consequences of bacterial fermentation in the human colon
-
10.1111/j.1365-2672.1991.tb02739.x, 1938669
-
Cummings JH, Macfarlane GT. The control and consequences of bacterial fermentation in the human colon. J Appl Bacteriol 1991, 70:443-459. 10.1111/j.1365-2672.1991.tb02739.x, 1938669.
-
(1991)
J Appl Bacteriol
, vol.70
, pp. 443-459
-
-
Cummings, J.H.1
Macfarlane, G.T.2
-
24
-
-
12244309781
-
Corn hybrid affects in vitro and in vivo measures of nutrient digestibility in dogs
-
Gajda M, Flickinger EA, Grieshop CM, Bauer LL, Merchen NR, Fahey GC. Corn hybrid affects in vitro and in vivo measures of nutrient digestibility in dogs. J Anim Sci 2005, 83:160-171.
-
(2005)
J Anim Sci
, vol.83
, pp. 160-171
-
-
Gajda, M.1
Flickinger, E.A.2
Grieshop, C.M.3
Bauer, L.L.4
Merchen, N.R.5
Fahey, G.C.6
-
25
-
-
0036056366
-
Update on the taxonomy and clinical aspects of the genus fusobacterium
-
Citron DM. Update on the taxonomy and clinical aspects of the genus fusobacterium. Clin Infect Dis 2002, 35:22-27.
-
(2002)
Clin Infect Dis
, vol.35
, pp. 22-27
-
-
Citron, D.M.1
-
26
-
-
67650482005
-
Commensal bacteria can enter colonic epithelial cells and induce proinflammatory cytokine secretion: a possible pathogenic mechanism of ulcerative colitis
-
10.1099/jmm.0.005801-0, 2887547, 19369513
-
Ohkusa T, Yoshida T, Sato N, Watanabe S, Tajiri H, Okayasu I. Commensal bacteria can enter colonic epithelial cells and induce proinflammatory cytokine secretion: a possible pathogenic mechanism of ulcerative colitis. J Med Microbiol 2009, 58:535-545. 10.1099/jmm.0.005801-0, 2887547, 19369513.
-
(2009)
J Med Microbiol
, vol.58
, pp. 535-545
-
-
Ohkusa, T.1
Yoshida, T.2
Sato, N.3
Watanabe, S.4
Tajiri, H.5
Okayasu, I.6
-
27
-
-
78651254481
-
Acute appendicitis is characterised by local invasion with Fusobacterium nucleatum/necrophorum
-
10.1136/gut.2009.191320, 19926616
-
Swidsinski A, Dörffel Y, Loening-Baucke V, Theissig F, Rückert JC, Ismail M, Rau WA, Gaschler D, Weizenegger M, Kühn S, Schilling J, Dörffel WV. Acute appendicitis is characterised by local invasion with Fusobacterium nucleatum/necrophorum. Gut 2011, 60:34-40. 10.1136/gut.2009.191320, 19926616.
-
(2011)
Gut
, vol.60
, pp. 34-40
-
-
Swidsinski, A.1
Dörffel, Y.2
Loening-Baucke, V.3
Theissig, F.4
Rückert, J.C.5
Ismail, M.6
Rau, W.A.7
Gaschler, D.8
Weizenegger, M.9
Kühn, S.10
Schilling, J.11
Dörffel, W.V.12
-
28
-
-
0346749817
-
Prebiotics affect nutrient digestibility but not faecal ammonia in dogs fed increased dietary protein levels
-
10.1079/BJN2003988, 14641959
-
Hesta M, Roosen W, Janssens GPJ, Millet S, De Wilde E. Prebiotics affect nutrient digestibility but not faecal ammonia in dogs fed increased dietary protein levels. Br J Nutr 2003, 90:1007-1014. 10.1079/BJN2003988, 14641959.
-
(2003)
Br J Nutr
, vol.90
, pp. 1007-1014
-
-
Hesta, M.1
Roosen, W.2
Janssens, G.P.J.3
Millet, S.4
De Wilde, E.5
-
29
-
-
0345771808
-
Dietary effects on bifidobacteria and Clostridium perfringens in the canine intestinal tract
-
Zentek J, Marquart B, Pietrzak T, Ballevre O, Rochat F. Dietary effects on bifidobacteria and Clostridium perfringens in the canine intestinal tract. J Anim Physiol and Anim Nutr 2003, 87:397-407.
-
(2003)
J Anim Physiol and Anim Nutr
, vol.87
, pp. 397-407
-
-
Zentek, J.1
Marquart, B.2
Pietrzak, T.3
Ballevre, O.4
Rochat, F.5
-
30
-
-
0029084396
-
Intestinal floras of populations that have a high risk of colon cancer
-
167598, 7574628
-
Moore WE, Moore LH. Intestinal floras of populations that have a high risk of colon cancer. Appl Environ Microbiol 1995, 61:3202-3207. 167598, 7574628.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 3202-3207
-
-
Moore, W.E.1
Moore, L.H.2
-
31
-
-
78649686679
-
A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes
-
10.1053/j.gastro.2010.08.049, 20816835
-
Willing BP, Dicksved J, Halfvarson J, Andersson AF, Lucio M, Zheng Z, Järnerot G, Tysk C, Jansson JK, Engstrand L. A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes. Gastroenterology 2010, 139:1844-1854. 10.1053/j.gastro.2010.08.049, 20816835.
-
(2010)
Gastroenterology
, vol.139
, pp. 1844-1854
-
-
Willing, B.P.1
Dicksved, J.2
Halfvarson, J.3
Andersson, A.F.4
Lucio, M.5
Zheng, Z.6
Järnerot, G.7
Tysk, C.8
Jansson, J.K.9
Engstrand, L.10
-
32
-
-
0038413992
-
Postnatal changes in bacterial populations in the gastrointestinal tract of dogs
-
10.2460/ajvr.2003.64.646, 12755306
-
Buddington RK. Postnatal changes in bacterial populations in the gastrointestinal tract of dogs. Am J Vet Res 2003, 64:646-651. 10.2460/ajvr.2003.64.646, 12755306.
-
(2003)
Am J Vet Res
, vol.64
, pp. 646-651
-
-
Buddington, R.K.1
-
34
-
-
0344625364
-
Effective recovery of bacterial DNA and percent-guanine-plus-cytosine-based analysis of community structure in the gastrointestinal tract of broiler chickens
-
106608, 9758849
-
Apajalahti JH, Särkilahti LK, Mäki BR, Heikkinen JP, Nurminen PH, Holben WE. Effective recovery of bacterial DNA and percent-guanine-plus-cytosine-based analysis of community structure in the gastrointestinal tract of broiler chickens. Appl Environ Microbiol 1998, 64:4084-4088. 106608, 9758849.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4084-4088
-
-
Apajalahti, J.H.1
Särkilahti, L.K.2
Mäki, B.R.3
Heikkinen, J.P.4
Nurminen, P.H.5
Holben, W.E.6
-
35
-
-
0029391360
-
DNA-based monitoring of total bacterial community structure in environmental samples
-
10.1111/j.1365-294X.1995.tb00263.x, 7582170
-
Holben WE, Harris D. DNA-based monitoring of total bacterial community structure in environmental samples. Mol Ecol 1995, 4:627-631. 10.1111/j.1365-294X.1995.tb00263.x, 7582170.
-
(1995)
Mol Ecol
, vol.4
, pp. 627-631
-
-
Holben, W.E.1
Harris, D.2
-
36
-
-
0024444791
-
Isolation and direct complete nucleotide determination of entire genes
-
3462689, 22894611
-
Edwards U, Rogall T, Blöcker H, Emde M, Böttger EC. Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16 S ribosomal RNA.Nucleic Acids Res 1989, 17:7843-7853. 3462689, 22894611.
-
(1989)
Characterization of a gene coding for 16 S ribosomal RNA.Nucleic Acids Res
, vol.17
, pp. 7843-7853
-
-
Edwards, U.1
Rogall, T.2
Blöcker, H.3
Emde, M.4
Böttger, E.C.5
-
37
-
-
0001857117
-
16S/23S rRNA sequencing
-
Wiley, New York, Stackebrandt E, Goodfellow M
-
Lane DJ. 16S/23S rRNA sequencing. Nucleic Acid Techniques in Bacterial Systematics 1991, 115-176. Wiley, New York, Stackebrandt E, Goodfellow M.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-176
-
-
Lane, D.J.1
-
38
-
-
58149200948
-
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 2009, 37:141-145.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 141-145
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
Kulam-Syed-Mohideen, A.S.7
McGarrell, D.M.8
Marsh, T.9
Garrity, G.M.10
Tiedje, J.M.11
|