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Volumn 63, Issue 2, 2012, Pages 348-357

A Molecular Enrichment Strategy Based on cpn60 for Detection of Epsilon-Proteobacteria in the Dog Fecal Microbiome

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CHAPERONIN;

EID: 84856747520     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-011-9931-7     Document Type: Article
Times cited : (34)

References (46)
  • 1
    • 69549129476 scopus 로고    scopus 로고
    • The 'rare biosphere': a reality check
    • Reeder J, Knight R (2009) The 'rare biosphere': a reality check. Nat Methods 6: 636-637.
    • (2009) Nat Methods , vol.6 , pp. 636-637
    • Reeder, J.1    Knight, R.2
  • 2
    • 73349110099 scopus 로고    scopus 로고
    • Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
    • Kunin V, Engelbrektson A, Ochman H, Hugenholtz P (2010) Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ Microbiol 12: 118-123.
    • (2010) Environ Microbiol , vol.12 , pp. 118-123
    • Kunin, V.1    Engelbrektson, A.2    Ochman, H.3    Hugenholtz, P.4
  • 4
    • 0037699638 scopus 로고    scopus 로고
    • AVMA American Veterinary Medical Association, Schaumburg
    • AVMA (2007) US Pet ownership and demographics sourcebook. American Veterinary Medical Association, Schaumburg.
    • (2007) US Pet ownership and demographics sourcebook
  • 6
    • 0035691554 scopus 로고    scopus 로고
    • Risk factors for campylobacter infection in infants and young children: a matched case-control study
    • Tenkate TD, Stafford RJ (2001) Risk factors for campylobacter infection in infants and young children: a matched case-control study. Epidemiol Infect 127: 399-404.
    • (2001) Epidemiol Infect , vol.127 , pp. 399-404
    • Tenkate, T.D.1    Stafford, R.J.2
  • 8
    • 34447271254 scopus 로고    scopus 로고
    • Salmonellae and campylobacters in household and stray dogs in northern Taiwan
    • Tsai HJ, Huang HC, Lin CM, Lien YY, Chou CH (2007) Salmonellae and campylobacters in household and stray dogs in northern Taiwan. Vet Res Commun 31: 931-939.
    • (2007) Vet Res Commun , vol.31 , pp. 931-939
    • Tsai, H.J.1    Huang, H.C.2    Lin, C.M.3    Lien, Y.Y.4    Chou, C.H.5
  • 9
    • 43049177765 scopus 로고    scopus 로고
    • Occurrence and species level diagnostics of Campylobacter spp., enteric Helicobacter spp. and Anaerobiospirillum spp. in healthy and diarrheic dogs and cats
    • Rossi M, Hanninen ML, Revez J, Hannula M, Zanoni RG (2008) Occurrence and species level diagnostics of Campylobacter spp., enteric Helicobacter spp. and Anaerobiospirillum spp. in healthy and diarrheic dogs and cats. Vet Microbiol 129: 304-314.
    • (2008) Vet Microbiol , vol.129 , pp. 304-314
    • Rossi, M.1    Hanninen, M.L.2    Revez, J.3    Hannula, M.4    Zanoni, R.G.5
  • 11
    • 2442478556 scopus 로고    scopus 로고
    • Longitudinal study of the excretion patterns of thermophilic Campylobacter spp. in young pet dogs in Denmark
    • Hald B, Pedersen K, Waino M, Jorgensen JC, Madsen M (2004) Longitudinal study of the excretion patterns of thermophilic Campylobacter spp. in young pet dogs in Denmark. J Clin Microbiol 42: 2003-2012.
    • (2004) J Clin Microbiol , vol.42 , pp. 2003-2012
    • Hald, B.1    Pedersen, K.2    Waino, M.3    Jorgensen, J.C.4    Madsen, M.5
  • 15
    • 77949444573 scopus 로고    scopus 로고
    • Detection and quantification of 14 Campylobacter species in pet dogs reveals an increase in species richness in feces of diarrheic animals
    • Chaban B, Ngeleka M, Hill JE (2010) Detection and quantification of 14 Campylobacter species in pet dogs reveals an increase in species richness in feces of diarrheic animals. BMC Microbiol 10: 73.
    • (2010) BMC Microbiol , vol.10 , pp. 73
    • Chaban, B.1    Ngeleka, M.2    Hill, J.E.3
  • 16
    • 80051843019 scopus 로고    scopus 로고
    • Microbes and gastrointestinal health of dogs and cats
    • Suchodolski JS (2011) Microbes and gastrointestinal health of dogs and cats. J Anim Sci 89: 1520-1530.
    • (2011) J Anim Sci , vol.89 , pp. 1520-1530
    • Suchodolski, J.S.1
  • 18
    • 79953786183 scopus 로고    scopus 로고
    • Massive parallel 16S rRNA gene pyrosequencing reveals highly diverse fecal bacterial and fungal communities in healthy dogs and cats
    • Handl S, Dowd SE, Garcia-Mazcorro JF, Steiner JM, Suchodolski JS (2011) Massive parallel 16S rRNA gene pyrosequencing reveals highly diverse fecal bacterial and fungal communities in healthy dogs and cats. FEMS Microbiol Ecol 76: 301-310.
    • (2011) FEMS Microbiol Ecol , vol.76 , pp. 301-310
    • Handl, S.1    Dowd, S.E.2    Garcia-Mazcorro, J.F.3    Steiner, J.M.4    Suchodolski, J.S.5
  • 19
    • 78751595975 scopus 로고    scopus 로고
    • Phylogenetic characterization of fecal microbial communities of dogs fed diets with or without supplemental dietary fiber using 454 pyrosequencing
    • Middelbos IS, Vester Boler BM, Qu A, White BA, Swanson KS, Fahey GC Jr (2010) Phylogenetic characterization of fecal microbial communities of dogs fed diets with or without supplemental dietary fiber using 454 pyrosequencing. PLoS One 5: e9768.
    • (2010) PLoS One , vol.5
    • Middelbos, I.S.1    Vester Boler, B.M.2    Qu, A.3    White, B.A.4    Swanson, K.S.5    Fahey Jr., G.C.6
  • 20
    • 0017383719 scopus 로고
    • Bacterial association in the gastrointestinal tract of beagle dogs
    • Davis CP, Cleven D, Balish E, Yale CE (1977) Bacterial association in the gastrointestinal tract of beagle dogs. Appl Environ Microbiol 34: 194-206.
    • (1977) Appl Environ Microbiol , vol.34 , pp. 194-206
    • Davis, C.P.1    Cleven, D.2    Balish, E.3    Yale, C.E.4
  • 21
    • 0036692074 scopus 로고    scopus 로고
    • Characterization of fecal bacterial populations in canines: effects of age, breed and dietary fiber
    • Simpson JM, Martineau B, Jones WE, Ballam JM, Mackie RI (2002) Characterization of fecal bacterial populations in canines: effects of age, breed and dietary fiber. Microb Ecol 44: 186-197.
    • (2002) Microb Ecol , vol.44 , pp. 186-197
    • Simpson, J.M.1    Martineau, B.2    Jones, W.E.3    Ballam, J.M.4    Mackie, R.I.5
  • 26
    • 33644840902 scopus 로고    scopus 로고
    • Improved template representation in cpn60 polymerase chain reaction (PCR) product libraries generated from complex templates by application of a specific mixture of PCR primers
    • Hill JE, Town JR, Hemmingsen SM (2006) Improved template representation in cpn60 polymerase chain reaction (PCR) product libraries generated from complex templates by application of a specific mixture of PCR primers. Environ Microbiol 8: 741-746.
    • (2006) Environ Microbiol , vol.8 , pp. 741-746
    • Hill, J.E.1    Town, J.R.2    Hemmingsen, S.M.3
  • 28
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 31
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-8235.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 32
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone C, Hamady M, Knight R (2006) UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7: 371.
    • (2006) BMC Bioinformatics , vol.7 , pp. 371
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 33
    • 0000122573 scopus 로고
    • PHYLIP-Phylogeny Inference Package (Version 3.2)
    • Felsenstein J (1989) PHYLIP-Phylogeny Inference Package (Version 3. 2). Cladistics 5: 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 34
    • 78149334379 scopus 로고    scopus 로고
    • hsp60 and 16S rRNA gene sequence relationships among species of the genus Bacteroides with the finding that Bacteroides suis and Bacteroides tectus are heterotypic synonyms of Bacteroides pyogenes
    • Sakamoto M, Suzuki N, Benno Y (2010) hsp60 and 16S rRNA gene sequence relationships among species of the genus Bacteroides with the finding that Bacteroides suis and Bacteroides tectus are heterotypic synonyms of Bacteroides pyogenes. Int J Syst Evol Microbiol 60: 2984-2990.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 2984-2990
    • Sakamoto, M.1    Suzuki, N.2    Benno, Y.3
  • 35
    • 67349174279 scopus 로고    scopus 로고
    • Characterization and quantification of feline fecal microbiota using cpn60 sequence-based methods and investigation of animal-to-animal variation in microbial population structure
    • Desai AR, Musil KM, Carr AP, Hill JE (2009) Characterization and quantification of feline fecal microbiota using cpn60 sequence-based methods and investigation of animal-to-animal variation in microbial population structure. Vet Microbiol 137: 120-128.
    • (2009) Vet Microbiol , vol.137 , pp. 120-128
    • Desai, A.R.1    Musil, K.M.2    Carr, A.P.3    Hill, J.E.4
  • 36
    • 77955773087 scopus 로고    scopus 로고
    • Characterization of rainbow trout (Oncorhynchus mykiss) intestinal microbiota and inflammatory marker gene expression in a recirculating aquaculture system
    • Mansfield GS, Desai AR, Nilson SA, van Kessel AG, Drew MD, Hill JE (2010) Characterization of rainbow trout (Oncorhynchus mykiss) intestinal microbiota and inflammatory marker gene expression in a recirculating aquaculture system. Aquaculture 307: 95-104.
    • (2010) Aquaculture , vol.307 , pp. 95-104
    • Mansfield, G.S.1    Desai, A.R.2    Nilson, S.A.3    van Kessel, A.G.4    Drew, M.D.5    Hill, J.E.6
  • 37
    • 33646112924 scopus 로고    scopus 로고
    • Characterization of intestinal microbiota and response to dietary virginiamycin supplementation in the broiler chicken
    • Dumonceaux TJ, Hill JE, Hemmingsen SM, van Kessel AG (2006) Characterization of intestinal microbiota and response to dietary virginiamycin supplementation in the broiler chicken. Appl Environ Microbiol 72: 2815-2823.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 2815-2823
    • Dumonceaux, T.J.1    Hill, J.E.2    Hemmingsen, S.M.3    van Kessel, A.G.4
  • 38
    • 77954254522 scopus 로고    scopus 로고
    • Improvement of the representation of bifidobacteria in fecal microbiota metagenomic libraries by application of the cpn60 universal primer cocktail
    • Hill JE, Fernando WM, Zello GA, Tyler RT, Dahl WJ, van Kessel AG (2010) Improvement of the representation of bifidobacteria in fecal microbiota metagenomic libraries by application of the cpn60 universal primer cocktail. Appl Environ Microbiol 76: 4550-4552.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 4550-4552
    • Hill, J.E.1    Fernando, W.M.2    Zello, G.A.3    Tyler, R.T.4    Dahl, W.J.5    van Kessel, A.G.6
  • 42
    • 33845901507 scopus 로고    scopus 로고
    • Microbial ecology: human gut microbes associated with obesity
    • Ley RE, Turnbaugh PJ, Klein S, Gordon JI (2006) Microbial ecology: human gut microbes associated with obesity. Nature 444: 1022-1023.
    • (2006) Nature , vol.444 , pp. 1022-1023
    • Ley, R.E.1    Turnbaugh, P.J.2    Klein, S.3    Gordon, J.I.4
  • 43
    • 77954738601 scopus 로고    scopus 로고
    • Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota
    • Round JL, Mazmanian SK (2010) Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota. Proc Natl Acad Sci USA 107: 12204-12209.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 12204-12209
    • Round, J.L.1    Mazmanian, S.K.2
  • 44
    • 55949125046 scopus 로고    scopus 로고
    • Analysis of bacterial diversity in the canine duodenum, jejunum, ileum, and colon by comparative 16S rRNA gene analysis
    • Suchodolski JS, Camacho J, Steiner JM (2008) Analysis of bacterial diversity in the canine duodenum, jejunum, ileum, and colon by comparative 16S rRNA gene analysis. FEMS Microbiol Ecol 66: 567-578.
    • (2008) FEMS Microbiol Ecol , vol.66 , pp. 567-578
    • Suchodolski, J.S.1    Camacho, J.2    Steiner, J.M.3
  • 46
    • 40849095897 scopus 로고    scopus 로고
    • Immunogenicity and pathogenicity of Helicobacter infections of veterinary animals
    • Harbour S, Sutton P (2008) Immunogenicity and pathogenicity of Helicobacter infections of veterinary animals. Vet Immunol Immunopathol 122: 191-203.
    • (2008) Vet Immunol Immunopathol , vol.122 , pp. 191-203
    • Harbour, S.1    Sutton, P.2


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