-
1
-
-
43049156015
-
-
10.1016/j.cell.2008.04.025
-
S. Neves, P. Tsokas, A. Sarkar, E. Grace, P. Rangamani, S. Taubenfeld, C. Alberini, J. Schaff, R. Blitzer, I. Moraru, and R. Iyengar, Cell 133, 666 (2008). 10.1016/j.cell.2008.04.025
-
(2008)
Cell
, vol.133
, pp. 666
-
-
Neves, S.1
Tsokas, P.2
Sarkar, A.3
Grace, E.4
Rangamani, P.5
Taubenfeld, S.6
Alberini, C.7
Schaff, J.8
Blitzer, R.9
Moraru, I.10
Iyengar, R.11
-
2
-
-
0037931402
-
-
10.1074/jbc.M300477200
-
B. Hendriks, L. Opresko, H. Wiley, and D. Lauffenburger, J. Biol. Chem. 278, 23343 (2003). 10.1074/jbc.M300477200
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 23343
-
-
Hendriks, B.1
Opresko, L.2
Wiley, H.3
Lauffenburger, D.4
-
3
-
-
0034644270
-
-
10.1038/35018085
-
G. Von Dassow, E. Meir, E. M. Munro, and G. M. Odell, Nature 406, 188 (2000). 10.1038/35018085
-
(2000)
Nature
, vol.406
, pp. 188
-
-
Von Dassow, G.1
Meir, E.2
Munro, E.M.3
Odell, G.M.4
-
4
-
-
26444583906
-
-
10.1073/pnas.0501352102
-
L. Ma, J. Wagner, J. J. Rice, W. Hu, A. J. Levine, and G. A. Stolovitzky, Proc. Natl. Acad. Sci. U.S.A. 102, 14266 (2005). 10.1073/pnas.0501352102
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 14266
-
-
Ma, L.1
Wagner, J.2
Rice, J.J.3
Hu, W.4
Levine, A.J.5
Stolovitzky, G.A.6
-
5
-
-
63549090526
-
-
10.1371/journal.pcbi.1000330
-
J. Muñoz-García, Z. Neufeld, B. N. Kholodenko, and H. M. Sauro, PLoS Comput. Biol. 5, e1000330 (2009). 10.1371/journal.pcbi.1000330
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. 1000330
-
-
Muñoz-García, J.1
Neufeld, Z.2
Kholodenko, B.N.3
Sauro, H.M.4
-
9
-
-
0242416539
-
-
10.1038/nature01546
-
W. J. Blake, M. Kaern, C. R. Cantor, and J. J. Collins, Nature 422, 633 (2003). 10.1038/nature01546
-
(2003)
Nature
, vol.422
, pp. 633
-
-
Blake, W.J.1
Kaern, M.2
Cantor, C.R.3
Collins, J.J.4
-
10
-
-
2942718723
-
-
10.1126/science.1098641
-
J. Raser and E. O'Shea, Science 304, 1811 (2004). 10.1126/science.1098641
-
(2004)
Science
, vol.304
, pp. 1811
-
-
Raser, J.1
O'Shea, E.2
-
11
-
-
74049112717
-
Millisecond-scale molecular dynamics simulations on anton
-
(ACM, New York).
-
D. E. Shaw, R. O. Dror, J. K. Salmon, J. P. Grossman, K. M. Mackenzie, J. A. Bank, C. Young, M. M. Deneroff, B. Batson, K. J. Bowers, E. Chow, M. P. Eastwood, D. J. Ierardi, J. L. Klepeis, J. S. Kuskin, R. H. Larson, K. Lindorff-Larsen, P. Maragakis, M. A. Moraes, S. Piana, Y. Shan, and B. Towles, " Millisecond-scale molecular dynamics simulations on anton.," Proceedings of the Conference on High Performance Computing, Networking, Storage and Analysis (SC09) (ACM, New York, 2009).
-
(2009)
Proceedings of the Conference on High Performance Computing, Networking, Storage and Analysis (SC09)
-
-
Shaw, D.E.1
Dror, R.O.2
Salmon, J.K.3
Grossman, J.P.4
MacKenzie, K.M.5
Bank, J.A.6
Young, C.7
Deneroff, M.M.8
Batson, B.9
Bowers, K.J.10
Chow, E.11
Eastwood, M.P.12
Ierardi, D.J.13
Klepeis, J.L.14
Kuskin, J.S.15
Larson, R.H.16
Lindorff-Larsen, K.17
Maragakis, P.18
Moraes, M.A.19
Piana, S.20
Shan, Y.21
Towles, B.22
more..
-
13
-
-
36149049574
-
-
10.1088/0305-4470/9/9/008
-
M. Doi, J. Phys. A 9, 1465 (1976). 10.1088/0305-4470/9/9/008
-
(1976)
J. Phys. A
, vol.9
, pp. 1465
-
-
Doi, M.1
-
14
-
-
0001199360
-
-
10.1088/0305-4470/9/9/009
-
M. Doi, J. Phys. A 9, 1479 (1976). 10.1088/0305-4470/9/9/009
-
(1976)
J. Phys. A
, vol.9
, pp. 1479
-
-
Doi, M.1
-
16
-
-
0000770829
-
-
10.1021/j100223a004
-
J. Keizer, J. Phys. Chem. 86, 5052 (1982). 10.1021/j100223a004
-
(1982)
J. Phys. Chem.
, vol.86
, pp. 5052
-
-
Keizer, J.1
-
17
-
-
0001218207
-
-
10.1007/BF01030197
-
C. W. Gardiner, K. J. McNeil, D. F. Walls, and I. S. Matheson, J. Stat. Phys. 14, 307 (1976). 10.1007/BF01030197
-
(1976)
J. Stat. Phys.
, vol.14
, pp. 307
-
-
Gardiner, C.W.1
McNeil, K.J.2
Walls, D.F.3
Matheson, I.S.4
-
18
-
-
0004300111
-
-
2nd ed., Springer Series in Synergetics Vol. (Springer Verlag, New York).
-
C. W. Gardiner, Handbook of Stochastic Methods: For Physics, Chemistry, and the Natural Sciences, 2nd ed., Springer Series in Synergetics Vol. 13 (Springer Verlag, New York, 1996).
-
(1996)
Handbook of Stochastic Methods: For Physics, Chemistry, and the Natural Sciences
, vol.13
-
-
Gardiner, C.W.1
-
24
-
-
43049083012
-
-
10.1088/1751-8113/41/6/065003
-
S. A. Isaacson, J. Phys. A: Math. Theor. 41, 065003 (2008). 10.1088/1751-8113/41/6/065003
-
(2008)
J. Phys. A: Math. Theor.
, vol.41
, pp. 065003
-
-
Isaacson, S.A.1
-
25
-
-
61849164660
-
-
10.1137/080721388
-
S. Engblom, L. Ferm, A. Hellander, and P. Lötstedt, SIAM J. Sci. Comput. 31, 1774 (2009). 10.1137/080721388
-
(2009)
SIAM J. Sci. Comput.
, vol.31
, pp. 1774
-
-
Engblom, S.1
Ferm, L.2
Hellander, A.3
Lötstedt, P.4
-
26
-
-
70350729439
-
-
10.1088/1478-3975/6/4/046001
-
R. Erban and S. J. Chapman, Phys. Biol. 6, 046001 (2009). 10.1088/1478-3975/6/4/046001
-
(2009)
Phys. Biol.
, vol.6
, pp. 046001
-
-
Erban, R.1
Chapman, S.J.2
-
27
-
-
55149086309
-
-
10.1137/070692017
-
R. A. Kerr, T. M. Bartol, B. Kaminsky, M. Dittrich, J. Chang, S. B. Baden, T. J. Sejnowski, and J. R. Stiles, SIAM J. Sci. Comput. 30, 3126 (2008). 10.1137/070692017
-
(2008)
SIAM J. Sci. Comput.
, vol.30
, pp. 3126
-
-
Kerr, R.A.1
Bartol, T.M.2
Kaminsky, B.3
Dittrich, M.4
Chang, J.5
Baden, S.B.6
Sejnowski, T.J.7
Stiles, J.R.8
-
28
-
-
33748520215
-
-
10.1088/1478-3967/1/3/001
-
S. S. Andrews and D. Bray, Phys. Biol. 1, 137 (2004). 10.1088/1478-3967/1/3/001
-
(2004)
Phys. Biol.
, vol.1
, pp. 137
-
-
Andrews, S.S.1
Bray, D.2
-
29
-
-
77949327931
-
-
10.1016/j.jc2009.12.038
-
A. Donev, V. V. Bulatov, T. Oppelstrup, G. H. Gilmer, B. Sadigh, and M. H. Kalos, J. Comput. Phys. 229, 3214 (2010). 10.1016/j.jcp.2009.12.038
-
(2010)
J. Comput. Phys.
, vol.229
, pp. 3214
-
-
Donev, A.1
Bulatov, V.V.2
Oppelstrup, T.3
Gilmer, G.H.4
Sadigh, B.5
Kalos, M.H.6
-
31
-
-
33645429016
-
-
10.1021/j100540a008
-
D. T. Gillespie, J. Phys. Chem. 81, 2340 (1977). 10.1021/j100540a008
-
(1977)
J. Phys. Chem.
, vol.81
, pp. 2340
-
-
Gillespie, D.T.1
-
34
-
-
84859526042
-
-
10.1103/PhysRevE.85.042901
-
S. Hellander, A. Hellander, and L. Petzold, Phys. Rev. E 85 (1), 042901 (2012). 10.1103/PhysRevE.85.042901
-
(2012)
Phys. Rev. e
, vol.85
, Issue.1
, pp. 042901
-
-
Hellander, S.1
Hellander, A.2
Petzold, L.3
-
35
-
-
78650556702
-
-
10.1073/pnas.1006565107
-
D. Fange, O. G. Berg, P. Sjöberg, and J. Elf, Proc. Natl. Acad. Sci. U.S.A. 107, 19820 (2010). 10.1073/pnas.1006565107
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 19820
-
-
Fange, D.1
Berg, O.G.2
Sjöberg, P.3
Elf, J.4
-
37
-
-
36449008566
-
-
10.1063/1.465074
-
W. Naumann, J. Chem. Phys. 98, 2353 (1993). 10.1063/1.465074
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 2353
-
-
Naumann, W.1
-
39
-
-
33947602177
-
-
10.1088/0953-8984/19/6/065117
-
K. Seki, A. I. Shushin, M. Wojcik, and M. Tachiya, J. Phys.: Condens. Matter 19, 065117 (2007). 10.1088/0953-8984/19/6/065117
-
(2007)
J. Phys.: Condens. Matter
, vol.19
, pp. 065117
-
-
Seki, K.1
Shushin, A.I.2
Wojcik, M.3
Tachiya, M.4
-
41
-
-
79960351109
-
-
10.1137/100794213
-
J. Lipkova, K. C. Zygalakis, S. J. Chapman, and R. Erban, SIAM J. Appl. Math. 71, 714 (2011). 10.1137/100794213
-
(2011)
SIAM J. Appl. Math.
, vol.71
, pp. 714
-
-
Lipkova, J.1
Zygalakis, K.C.2
Chapman, S.J.3
Erban, R.4
-
43
-
-
84899509008
-
A comparison of bimolecular reaction models for stochastic reaction-diffusion systems
-
(in press). 10.1007/s11538-013-9833-6
-
I. C. Agbanusi and S. A. Isaacson, " A comparison of bimolecular reaction models for stochastic reaction-diffusion systems.," Bull. Math. Biol. (in press). 10.1007/s11538-013-9833-6
-
Bull. Math. Biol.
-
-
Agbanusi, I.C.1
Isaacson, S.A.2
-
47
-
-
73649105850
-
-
10.1103/PhysRevE.80.066106
-
S. A. Isaacson and D. Isaacson, Phys. Rev. E 80, 066106 (2009). 10.1103/PhysRevE.80.066106
-
(2009)
Phys. Rev. e
, vol.80
, pp. 066106
-
-
Isaacson, S.A.1
Isaacson, D.2
-
48
-
-
84865583080
-
-
10.1103/PhysRevE.86.021921
-
C. A. Yates, R. E. Baker, R. Erban, and P. K. Maini, Phys. Rev. E 86, 021921 (2012). 10.1103/PhysRevE.86.021921
-
(2012)
Phys. Rev. e
, vol.86
, pp. 021921
-
-
Yates, C.A.1
Baker, R.E.2
Erban, R.3
Maini, P.K.4
-
49
-
-
84859599054
-
-
10.1371/journal.pone.0033384
-
M. Vigelius and B. Meyer, PloS ONE 7, e33384 (2012). 10.1371/journal. pone.0033384
-
(2012)
PloS ONE
, vol.7
, pp. 33384
-
-
Vigelius, M.1
Meyer, B.2
-
52
-
-
16644362831
-
-
10.1529/biophysj.104.048868
-
F. Kühner, L. T. Costa, P. M. Bisch, S. Thalhammer, W. M. Heckl, and H. E. Gaub, Biophys. J. 87, 2683 (2004). 10.1529/biophysj.104.048868
-
(2004)
Biophys. J.
, vol.87
, pp. 2683
-
-
Kühner, F.1
Costa, L.T.2
Bisch, P.M.3
Thalhammer, S.4
Heckl, W.M.5
Gaub, H.E.6
-
54
-
-
18444371457
-
-
10.1016/j.cpc.2005.01.010
-
T. Hahn, Comput. Phys. Commun. 168, 78 (2005). 10.1016/j.cpc.2005.01.010
-
(2005)
Comput. Phys. Commun.
, vol.168
, pp. 78
-
-
Hahn, T.1
-
55
-
-
84903370480
-
-
Cubature integration library, available at.
-
S. G. Johnson, Cubature integration library, available at: http://ab-initio.mit.edu/wiki/index.php/Cubature.
-
-
-
Johnson, S.G.1
|